Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002736

Physical Location & Seq

Genomic Coordinates Forward (+)

3401937 .. 3403997

Gene Structure 2061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g04350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGTCTGCAGAGGCTAAATTAAGGTTTAAGCTCAATAAGAAACTCAAAGCATCTATTGGAAGGCCCAAGTTTCACAGTGATGGAAAAAGGGACGATGATAATAGGAAGGGGAGCTTTAATAAGAAGGGGATAAAGTTTCATAATTCTGAAGAAGGGAGTCGTGGAGATCTTAATAAAAGGGACGATTCTAAAACCATGAATGGTGATAGGAGAAGGAAGAGAATCTATGGTGACCAAGACACAGATCGGGATTCTCAGTCATCTGGAAATGGAGAGGCATCTTATCGGAAGTCTTTTTCTAGGAAAGGACCGAACCAAGTAAGGGATGGTTTTGATAGTGAAAGGAACGATACTAGAGCTCCTTTGCGTCCTCGCTCTAGGTGGGGTTCTAATGATTTGGGGAACACTGAATCTGAAACTAAACGTTTTTCTCGTAGGAGTCCCAGAGAGTCCAATAGAACCAAAAGTAAGGATGGTTTTGGTTATGAAAAGAACGGAAGTGAATCTCCTTTGCGTTCTCGCTCTAGGTGGGGTTCTAATAGATTAGAGAATGCTGATTCTGAAACTAAACGTTTTTCTCCTAGGAGTCCCAAAGTTTCCAATAAAACCAAAAGTAAGGATGGTTTTGGAAATGAAAAGAACGCAAGTGAATCTCCTGGGCATCCTCGCTCTATCTGGGTTTCTAATGGATTAGAGAATGCTACTTCTGAAAATAAACGTTTTTCATCTAAGGATAGAGGTGCAAAAGTTTCCAGTAAAACCAAATATAAGGAGGGCGATAAGATGGAATCTGTTAATACCGATGGTGGTCAGGCTAGTGCACTGAAGAAACATAACAAATTTAAGCCGGATAAGAAAATTTTGAATGAAGAATCAGGGGTGATAGATGATCAGCCAAAGAAGAGGAAGCGAATTCGATTAGATCCTCATGATATCTCAAATAAAAGATTTGATGATACTATTGTTATAAACGAAAGCAAAAAGGAGAAGGAAAAAGATGAGGAGGAAAAAGCTGAAATCTCAAAAAATGCACAGTTTCGTGCAATACAACCAAGTTCCTCAATCCTAACTTATGTGGAAGATAATTTGTTGGGTCGTAGACGCTTGATAGAGTTGAGGAGGGCAGGCTACAACACTGAGCTTTCTGCCCCATTGGATAATATTCCTTTCTCTACCAGCTCAGAAAGAGAGAATATTGAGGAAAATATATTTAGAAATAAATTGACATTTTTTGCCGCCGCAAAAGTTTCATTATCATTTCCACCTCCTGATCTTCCAGAGATTGCATTTGCAGGTGGAGATCAAATGTTGGAAAATCATCACTACTTAATGCACTTACTAGACAATGGGGTGTTGTTCGAACGTCAGACAAGCCTGGTCTTACTCAGACTATTAACTTCTTCAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

470

Amino Acids

53.38

Weight (kDa)

9.87

Isoelectric Point (pI)

68.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58370 AT5G58370 AT5G58370
fragaria_vesca	FvH4_3g40250 FvH4_3g40250
malus_domestica	MD03G1054800.v1.1
prunus_persica	Prupe.6G043400_v2.0.a1
pyrus_communis	pycom03g04350
rosa_chinensis	RchiOBHm_Chr5g0072471 RchiOBHm_Chr5g0072511 RchiOBHm_Chr5g0073721
rosa_laevigata	RLG00000036302 RLG00000036304 RLG00000036308
rosa_multiflora	Rmu_sc0004501.1_g000007 Rmu_sc0004594.1_g000018 Rmu_sc0008676.1_g000008 Rmu_sc0008676.1_g000023 Rmu_sc0009248.1_g000009
rosa_roxburghii	Rroxscaffold_1G00007580 Rroxscaffold_1G00008640 Rroxscaffold_1G00008730
rosa_rugosa	Rorug05G0418400 Rorug05G0430400
rosa_samantha	Rh5AG475000 Rh5AG483100 Rh5BG495000 Rh5BG495400 Rh5BG504100 Rh5CG518900 Rh5CG519200 Rh5CG527600 Rh5DG507100 Rh5DG507400 Rh5DG516200
rosa_wichuraiana	Rw5G044100 Rw5G044130 Rw5G044890 Rw5G044910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	968
AarI	CACCTGC	1 cut(s)	1283
Acc36I	ACCTGC	1 cut(s)	1283
AccI	GTMKAC	1 cut(s)	1099
AciI	CCGC	2 cut(s)	1236, 1239
AclI	AACGTT	3 cut(s)	424, 571, 718
AclWI	GGATC	1 cut(s)	917
AcsI	RAATTY	3 cut(s)	839, 858, 912
AcuI	CTGAAG	2 cut(s)	168, 845
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	2 cut(s)	865, 1404
AjnI	CCWGG	2 cut(s)	655, 1374
AluBI	AGCT	6 cut(s)	31, 114, 359, 1013, 1141, 1179
AluI	AGCT	6 cut(s)	31, 114, 359, 1013, 1141, 1179
Alw21I	GWGCWC	2 cut(s)	361, 823
Alw44I	GTGCAC	1 cut(s)	819
AlwI	GGATC	1 cut(s)	917
AoxI	GGCC	1 cut(s)	62
ApaLI	GTGCAC	1 cut(s)	819
ApoI	RAATTY	3 cut(s)	839, 858, 912
AspA2I	CCTAGG	1 cut(s)	581
AspS9I	GGNCC	2 cut(s)	63, 308
AsuHPI	GGTGA	3 cut(s)	215, 242, 892
AsuII	TTCGAA	1 cut(s)	1359
AvaII	GGWCC	1 cut(s)	308
AvrII	CCTAGG	1 cut(s)	581
BaeGI	GKGCMC	1 cut(s)	823
BaeI	ACNNNNGTAYC	2 cut(s)	948, 981
BanII	GRGCYC	1 cut(s)	361
Bbv12I	GWGCWC	2 cut(s)	361, 823
BccI	CCATC	6 cut(s)	74, 320, 467, 614, 778, 797
BciT130I	CCWGG	2 cut(s)	657, 1376
BclI	TGATCA	1 cut(s)	889
BfaI	CTAG	8 cut(s)	300, 354, 378, 525, 582, 816, 1340, 1408
BfmI	CTRYAG	1 cut(s)	6
BfuAI	ACCTGC	1 cut(s)	1283
BglII	AGATCT	1 cut(s)	166
BisI	GCNGC	2 cut(s)	1236, 1239
BlnI	CCTAGG	1 cut(s)	581
BlsI	GCNGC	2 cut(s)	1237, 1240
Bme1390I	CCNGG	2 cut(s)	657, 1376
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	2 cut(s)	63, 308
BmrFI	CCNGG	2 cut(s)	657, 1376
BmsI	GCATC	3 cut(s)	59, 287, 670
Bpu14I	TTCGAA	1 cut(s)	1359
BsaJI	CCNNGG	2 cut(s)	581, 656
BsaXI	ACNNNNNCTCC	2 cut(s)	343, 373
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse1I	ACTGG	1 cut(s)	753
BseBI	CCWGG	2 cut(s)	657, 1376
BseDI	CCNNGG	2 cut(s)	581, 656
BseGI	GGATG	4 cut(s)	331, 478, 625, 661
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMII	CTCAG	4 cut(s)	269, 1128, 1194, 1399
BseNI	ACTGG	1 cut(s)	753
BseRI	GAGGAG	2 cut(s)	1016, 1132
BseSI	GKGCMC	1 cut(s)	823
BshFI	GGCC	1 cut(s)	64
BsiHKAI	GWGCWC	2 cut(s)	361, 823
BsiSI	CCGG	1 cut(s)	848
BslFI	GGGAC	4 cut(s)	104, 194, 426, 573
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmFI	GGGAC	4 cut(s)	104, 194, 426, 573
BsmI	GAATGC	2 cut(s)	556, 703
BsnI	GGCC	1 cut(s)	64
Bsp119I	TTCGAA	1 cut(s)	1359
Bsp1286I	GDGCHC	2 cut(s)	361, 823
Bsp143I	GATC	6 cut(s)	166, 244, 889, 922, 1270, 1300
BspACI	CCGC	2 cut(s)	1236, 1239
BspANI	GGCC	1 cut(s)	64
BspCNI	CTCAG	4 cut(s)	268, 1129, 1193, 1398
BspHI	TCATGA	1 cut(s)	928
BspMAI	CTGCAG	1 cut(s)	10
BspMI	ACCTGC	1 cut(s)	1283
BspPI	GGATC	1 cut(s)	917
BspT104I	TTCGAA	1 cut(s)	1359
BsrI	ACTGG	1 cut(s)	753
BssECI	CCNNGG	2 cut(s)	581, 656
BssMI	GATC	6 cut(s)	166, 244, 889, 922, 1270, 1300
BssT1I	CCWWGG	1 cut(s)	581
Bst2UI	CCWGG	2 cut(s)	657, 1376
Bst4CI	ACNGT	2 cut(s)	77, 1035
Bst6I	CTCTTC	2 cut(s)	212, 896
BstBI	TTCGAA	1 cut(s)	1359
BstC8I	GCNNGC	1 cut(s)	1126
BstDEI	CTNAG	5 cut(s)	255, 729, 1137, 1180, 1385
BstEII	GGTNACC	1 cut(s)	230
BstF5I	GGATG	4 cut(s)	331, 478, 625, 661
BstKTI	GATC	6 cut(s)	169, 247, 892, 925, 1273, 1303
BstMBI	GATC	6 cut(s)	166, 244, 889, 922, 1270, 1300
BstNI	CCWGG	2 cut(s)	657, 1376
BstPI	GGTNACC	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	655, 1374
BstSFI	CTRYAG	1 cut(s)	6
BstSLI	GKGCMC	1 cut(s)	823
BstX2I	RGATCY	2 cut(s)	166, 922
BstYI	RGATCY	2 cut(s)	166, 922
BsuRI	GGCC	1 cut(s)	64
BtsCI	GGATG	4 cut(s)	331, 478, 625, 661
BtsIMutI	CAGTG	4 cut(s)	82, 405, 821, 1134
BveI	ACCTGC	1 cut(s)	1283
Cac8I	GCNNGC	1 cut(s)	1126
CciI	TCATGA	1 cut(s)	928
Cfr13I	GGNCC	2 cut(s)	63, 308
CseI	GACGC	2 cut(s)	356, 1110
CviAII	CATG	2 cut(s)	196, 929
DdeI	CTNAG	5 cut(s)	255, 729, 1137, 1180, 1385
DpnI	GATC	6 cut(s)	168, 246, 891, 924, 1272, 1302
DpnII	GATC	6 cut(s)	166, 244, 889, 922, 1270, 1300
Eam1104I	CTCTTC	2 cut(s)	212, 896
EarI	CTCTTC	2 cut(s)	212, 896
Ecl136II	GAGCTC	1 cut(s)	359
Eco130I	CCWWGG	1 cut(s)	581
Eco24I	GRGCYC	1 cut(s)	361
Eco32I	GATATC	1 cut(s)	934
Eco47I	GGWCC	1 cut(s)	308
Eco53kI	GAGCTC	1 cut(s)	359
Eco57I	CTGAAG	2 cut(s)	168, 845
Eco91I	GGTNACC	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	359
EcoO65I	GGTNACC	1 cut(s)	230
EcoRI	GAATTC	1 cut(s)	912
EcoRII	CCWGG	2 cut(s)	655, 1374
EcoRV	GATATC	1 cut(s)	934
EcoT14I	CCWWGG	1 cut(s)	581
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	581
FaeI	CATG	2 cut(s)	199, 932
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FaqI	GGGAC	4 cut(s)	104, 194, 426, 573
FatI	CATG	2 cut(s)	195, 928
FbaI	TGATCA	1 cut(s)	889
FblI	GTMKAC	1 cut(s)	1099
Fnu4HI	GCNGC	2 cut(s)	1236, 1239
FokI	GGATG	4 cut(s)	338, 485, 632, 648
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	2 cut(s)	1236, 1239
FspBI	CTAG	8 cut(s)	300, 354, 378, 525, 582, 816, 1340, 1408
GluI	GCNGC	2 cut(s)	1236, 1239
HaeIII	GGCC	1 cut(s)	64
HapII	CCGG	1 cut(s)	848
HgaI	GACGC	2 cut(s)	356, 1110
Hin1II	CATG	2 cut(s)	199, 932
HpaII	CCGG	1 cut(s)	848
HphI	GGTGA	3 cut(s)	215, 242, 892
Hpy166II	GTNNAC	2 cut(s)	821, 1100
Hpy188I	TCNGA	8 cut(s)	148, 288, 415, 562, 709, 1183, 1368, 1388
Hpy188III	TCNNGA	5 cut(s)	248, 264, 929, 1268, 1277
Hpy8I	GTNNAC	2 cut(s)	821, 1100
HpyAV	CCTTC	6 cut(s)	54, 100, 118, 146, 207, 982
HpyCH4III	ACNGT	2 cut(s)	77, 1035
HpyCH4IV	ACGT	4 cut(s)	424, 571, 718, 1363
HpyCH4V	TGCA	8 cut(s)	8, 743, 821, 1031, 1043, 1286, 1292, 1333
HpyF3I	CTNAG	5 cut(s)	255, 729, 1137, 1180, 1385
HpySE526I	ACGT	4 cut(s)	424, 571, 718, 1363
Hsp92II	CATG	2 cut(s)	199, 932
Ksp22I	TGATCA	1 cut(s)	889
Kzo9I	GATC	6 cut(s)	166, 244, 889, 922, 1270, 1300
LmnI	GCTCC	2 cut(s)	111, 364
LweI	GCATC	3 cut(s)	59, 287, 670
MaeI	CTAG	8 cut(s)	300, 354, 378, 525, 582, 816, 1340, 1408
MaeII	ACGT	4 cut(s)	424, 571, 718, 1363
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	6 cut(s)	168, 246, 891, 924, 1272, 1302
MboI	GATC	6 cut(s)	166, 244, 889, 922, 1270, 1300
MboII	GAAGA	8 cut(s)	161, 229, 838, 881, 913, 1091, 1265, 1392
MflI	RGATCY	2 cut(s)	166, 922
MhlI	GDGCHC	2 cut(s)	361, 823
MluCI	AATT	7 cut(s)	17, 142, 839, 858, 912, 1084, 1220
MlyI	GAGTC	4 cut(s)	166, 448, 458, 595
MmeI	TCCRAC	1 cut(s)	1290
MseI	TTAA	8 cut(s)	20, 27, 117, 171, 795, 843, 1328, 1394
MslI	CAYNNNNRTG	1 cut(s)	78
MspI	CCGG	1 cut(s)	848
MspR9I	CCNGG	2 cut(s)	657, 1376
Mva1269I	GAATGC	2 cut(s)	556, 703
MvaI	CCWGG	2 cut(s)	657, 1376
NdeII	GATC	6 cut(s)	166, 244, 889, 922, 1270, 1300
NlaIII	CATG	2 cut(s)	199, 932
NmuCI	GTSAC	1 cut(s)	230
NspV	TTCGAA	1 cut(s)	1359
PagI	TCATGA	1 cut(s)	928
PaqCI	CACCTGC	1 cut(s)	1283
PcsI	WCGNNNNNNNCGW	1 cut(s)	430
PctI	GAATGC	2 cut(s)	556, 703
PfeI	GAWTC	9 cut(s)	185, 222, 251, 410, 503, 557, 650, 788, 872
PkrI	GCNGC	2 cut(s)	1237, 1240
PleI	GAGTC	4 cut(s)	165, 447, 457, 594
PpsI	GAGTC	4 cut(s)	165, 447, 457, 594
PsiI	TTATAA	1 cut(s)	968
Psp124BI	GAGCTC	1 cut(s)	361
Psp1406I	AACGTT	3 cut(s)	424, 571, 718
Psp6I	CCWGG	2 cut(s)	655, 1374
PspEI	GGTNACC	1 cut(s)	230
PspGI	CCWGG	2 cut(s)	655, 1374
PspPI	GGNCC	2 cut(s)	63, 308
PstI	CTGCAG	1 cut(s)	10
PsuI	RGATCY	2 cut(s)	166, 922
RseI	CAYNNNNRTG	1 cut(s)	78
SacI	GAGCTC	1 cut(s)	361
SaqAI	TTAA	8 cut(s)	20, 27, 117, 171, 795, 843, 1328, 1394
SatI	GCNGC	2 cut(s)	1236, 1239
Sau3AI	GATC	6 cut(s)	166, 244, 889, 922, 1270, 1300
Sau96I	GGNCC	2 cut(s)	63, 308
SchI	GAGTC	4 cut(s)	166, 448, 458, 595
ScrFI	CCNGG	2 cut(s)	657, 1376
SduI	GDGCHC	2 cut(s)	361, 823
SfaNI	GCATC	3 cut(s)	59, 287, 670
SfcI	CTRYAG	1 cut(s)	6
SfuI	TTCGAA	1 cut(s)	1359
SinI	GGWCC	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	78
Sse9I	AATT	7 cut(s)	17, 142, 839, 858, 912, 1084, 1220
SsiI	CCGC	2 cut(s)	1236, 1239
SspI	AATATT	2 cut(s)	1162, 1195
SspMI	CTAG	8 cut(s)	300, 354, 378, 525, 582, 816, 1340, 1408
SstI	GAGCTC	1 cut(s)	361
StyD4I	CCNGG	2 cut(s)	655, 1374
StyI	CCWWGG	1 cut(s)	581
TaaI	ACNGT	2 cut(s)	77, 1035
TaiI	ACGT	4 cut(s)	427, 574, 721, 1366
TaqI	TCGA	2 cut(s)	916, 1359
TaqII	GACCGA	1 cut(s)	325
TasI	AATT	7 cut(s)	17, 142, 839, 858, 912, 1084, 1220
TauI	GCSGC	2 cut(s)	1238, 1241
TfiI	GAWTC	9 cut(s)	185, 222, 251, 410, 503, 557, 650, 788, 872
Tru1I	TTAA	8 cut(s)	20, 27, 117, 171, 795, 843, 1328, 1394
Tru9I	TTAA	8 cut(s)	20, 27, 117, 171, 795, 843, 1328, 1394
TscAI	CASTG	4 cut(s)	82, 412, 828, 1141
TseFI	GTSAC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	7 cut(s)	128, 212, 501, 648, 714, 882, 1239
TspGWI	ACGGA	1 cut(s)	510
TspRI	CASTG	4 cut(s)	82, 412, 828, 1141
VneI	GTGCAC	1 cut(s)	819
VpaK11BI	GGWCC	1 cut(s)	308
XapI	RAATTY	3 cut(s)	839, 858, 912
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323
XmaJI	CCTAGG	1 cut(s)	581
XmiI	GTMKAC	1 cut(s)	1099
XspI	CTAG	8 cut(s)	300, 354, 378, 525, 582, 816, 1340, 1408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.