Rh5AG475000

Ferrous iron transport protein B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0002736
Physical Location & Seq
Reverse (-)
81488108 .. 81491450
3343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG475000.1

Sequence Viewer

Length: 1833 bp
ATGTCTGCAGAGGAAAAATTAAGGTTTATGTTCAATAAGAAACTCAAAATAACAGTTGGAAATTCTAAGTTTTCAAGTAGTGGGAGAAAAAAGGCTGAAGATAATGTCAATGAGAGTGAGAATGGTAAGAGAGAGAACTATAAATCGAGTGTAAGAGATAAGAAGTTTCATACTTCTGAAGAAGGGAGTCGGGGAGTTTTTGATAGAAGGAAGAGAATCTATGTTGATCGAGATGCAGCTTGGGAGGCTAACAGTAATGAGGAGGCACCTTATAGGAAGGTTTTATCTAAAAAAGGACAGAATCAATTGAAGTATGGTTATATTAATGAGAAGAACTACAGTAGATCTCCTTCACGTCCTCGTTACAAGTGGGGTTCTAATGAGAGTGCTTCTGAAACTAAACGGTTTTCTCCCAAGGAGAGAAGTGCAAAAGTTTATAATAACTTTGGCAATGAAAAGAATAATAGTAGATTTCCTTCTCGCCCCCGTTCTAAGTGGGATTCTGATGGATTAGAGAATGCTTCTGAAACTAAACGTTTTTCTCCCAAGGTTAGAAGTGCAAAAGTTTACAATGAAACAAAAGTTAAGGACGCTGATAATTTTGGTAATGAAAAGAGTAGCAGCAGATTTCCTTCGCGTCCTCGCTCTACATGGGGTTCTGATATCACTGCTTCTGAAACTAAACGTTTTTCTCCTAAGGTTAGAAGTGAGAAACGTTCCAATAAAACCAAAGTTAAGGATGTTGATGAGATGGAATCCAATACAACTGATGGTGGTCGGAGTGCTTCACTGAAGAAACATAACCAAATAAAACCAGACTTGCAAAAATCCCCAAATATATCTCTTCCAAATACTGTGAAGAAAAAAGCACGGGAAAAGAATATCTCGGATGAAGGATCAGATGTGCTAGATGGTCAGCGAAAGAAGAAGAAGCGAATGCGACTAGATCCATATGACATTTCAAATAAACGACTTGATGATAGTATTGCTACAAATGAAAACTTAAAGGAGATGGAAAAAGATGTTGAGGAAAAAGCTGAGATATCAAAGAATGCACAATTTCGTGCAATCCAACCAAGTCCATCAATCCTTTCCTATGTCGAAGATAATTTGTTGGGTCGTAGACGCTTGATTGAGCTGAGGAGGGCAGGCTACAACACTGAGCTTTCTGCACCATTGGATAATACTCCTTTCTCTACCAGCTCAGAAAGAGAGCGGATTGAGGAAAATATATTTAGGAGTAAATTGACATTTTTTGCTGCTGCAAAAGTTTCATCATCATTTCCACCTCCTGATCTTCCGGAGATTGCATTTGCAGGAAGGTCAAATGTTGGGAAATCATCACTACTTAATGCACTTACCAGAAATTGGGGTGTTGCACGAACATCAGATAAGCCTGGTCTTACTCAGAGTATTAATTTCTTCAATCTTGGATCAAAGCTCTGTTTGGTTGATTTGCCTGGATATGGCTTTGCTTATGCTAAAGAAGAGGTTAAGGATGCTTGGGAGGAGCTTGTGAAGGAGTATGTTTCCTCAAGAGTTGGTCTAAAACGAGTGTGCTTACTTATTGATACCAAATGGGGAATGAAGCCTAGGGATCGTGAACTCATTGACCTGATGGAAAGATCTCAAACCAAGTATCAGATCTTATTAACAAAATCAGATGCGGTTTTCCCGATTGATGTAGCACGCCGTGCAATGCAAATTGAAGAGAGCCTCAAGGCAAATAAGTCTGTGGTCCAACCTGTGATGATGATGAGCTCAAGAACTGGAGCTGGTATACGAAGTTTACGAACAGTGCTGGCAAAAATTGCTCGAGTTGCCAAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

610

Amino Acids

69.49

Weight (kDa)

9.92

Isoelectric Point (pI)

56.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 435 - 553 1.8e-19 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 438
AccB1I GGYRCC 1 cut(s) 265
AccB7I CCANNNNNTGG 1 cut(s) 1368
AccBSI CCGCTC 1 cut(s) 1216
AccI GTMKAC 2 cut(s) 1123, 1780
AccII CGCG 1 cut(s) 637
AccIII TCCGGA 1 cut(s) 1300
AciI CCGC 2 cut(s) 1216, 1667
AclI AACGTT 3 cut(s) 535, 685, 715
AclWI GGATC 4 cut(s) 904, 941, 1441, 1605
AcsI RAATTY 1 cut(s) 61
AcuI CTGAAG 3 cut(s) 117, 198, 812
AdeI CACNNNGTG 1 cut(s) 1694
AfiI CCNNNNNNNGG 2 cut(s) 1368, 1466
AgsI TTSAA 6 cut(s) 34, 75, 310, 963, 1426, 1709
AjiI CACGTC 1 cut(s) 356
AjnI CCWGG 2 cut(s) 1396, 1459
AluBI AGCT 9 cut(s) 239, 1037, 1138, 1165, 1203, 1441, 1513, 1761, 1775
AluI AGCT 9 cut(s) 239, 1037, 1138, 1165, 1203, 1441, 1513, 1761, 1775
Alw21I GWGCWC 1 cut(s) 1763
AlwI GGATC 4 cut(s) 904, 941, 1441, 1605
Ama87I CYCGRG 1 cut(s) 1815
Aor13HI TCCGGA 1 cut(s) 1300
ApeKI GCWGC 4 cut(s) 236, 621, 1259, 1262
ApoI RAATTY 1 cut(s) 61
AseI ATTAAT 2 cut(s) 324, 1416
AspA2I CCTAGG 1 cut(s) 1592
AspS9I GGNCC 1 cut(s) 1738
AvaI CYCGRG 1 cut(s) 1815
AvaII GGWCC 1 cut(s) 1738
AvrII CCTAGG 1 cut(s) 1592
AxyI CCTNAGG 1 cut(s) 696
BanI GGYRCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 1763
BarI GAAGNNNNNNTAC 4 cut(s) 334, 366, 460, 492
Bbv12I GWGCWC 1 cut(s) 1763
BbvCI CCTCAGC 1 cut(s) 1139
BbvI GCAGC 4 cut(s) 248, 633, 1246, 1249
BccI CCATC 7 cut(s) 500, 745, 764, 905, 1006, 1090, 1612
BceAI ACGGC 1 cut(s) 1677
BciT130I CCWGG 2 cut(s) 1398, 1461
BfaI CTAG 3 cut(s) 908, 944, 1593
BfmI CTRYAG 2 cut(s) 6, 337
BglII AGATCT 3 cut(s) 344, 1625, 1644
BisI GCNGC 4 cut(s) 237, 622, 1260, 1263
BlnI CCTAGG 1 cut(s) 1592
BlsI GCNGC 4 cut(s) 238, 623, 1261, 1264
Bme1390I CCNGG 2 cut(s) 1398, 1461
Bme18I GGWCC 1 cut(s) 1738
BmeT110I CYCGRG 1 cut(s) 1815
BmgBI CACGTC 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 1738
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 2 cut(s) 1398, 1461
BmsI GCATC 3 cut(s) 223, 1489, 1654
BpmI CTGGAG 1 cut(s) 1791
Bpu10I CCTNAGC 1 cut(s) 1139
BpuEI CTTGAG 3 cut(s) 1519, 1703, 1747
BsaJI CCNNGG 3 cut(s) 414, 546, 1592
BsaWI WCCGGW 1 cut(s) 1300
Bsc4I CCNNNNNNNGG 2 cut(s) 1368, 1466
Bse1I ACTGG 1 cut(s) 1774
Bse21I CCTNAGG 1 cut(s) 696
Bse3DI GCAATG 2 cut(s) 457, 1704
BseAI TCCGGA 1 cut(s) 1300
BseBI CCWGG 2 cut(s) 1398, 1461
BseDI CCNNGG 3 cut(s) 414, 546, 1592
BseGI GGATG 3 cut(s) 745, 895, 1504
BseLI CCNNNNNNNGG 2 cut(s) 1368, 1466
BseMI GCAATG 2 cut(s) 457, 1704
BseMII CTCAG 5 cut(s) 1029, 1130, 1152, 1218, 1421
BseNI ACTGG 1 cut(s) 1774
BseRI GAGGAG 3 cut(s) 275, 1156, 1523
BseXI GCAGC 4 cut(s) 248, 633, 1246, 1249
BsgI GTGCAG 1 cut(s) 1155
Bsh1236I CGCG 1 cut(s) 637
BshNI GGYRCC 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 1763
BsiHKCI CYCGRG 1 cut(s) 1815
BsiSI CCGG 1 cut(s) 1301
BslI CCNNNNNNNGG 2 cut(s) 1368, 1466
BsmI GAATGC 3 cut(s) 523, 942, 1057
BsoBI CYCGRG 1 cut(s) 1815
Bsp1286I GDGCHC 1 cut(s) 1763
Bsp13I TCCGGA 1 cut(s) 1300
Bsp143I GATC 9 cut(s) 226, 344, 896, 946, 1294, 1433, 1597, 1625, 1644
BspACI CCGC 2 cut(s) 1216, 1667
BspCNI CTCAG 5 cut(s) 1030, 1131, 1153, 1217, 1420
BspEI TCCGGA 1 cut(s) 1300
BspFNI CGCG 1 cut(s) 637
BspLI GGNNCC 1 cut(s) 267
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 4 cut(s) 904, 941, 1441, 1605
BspT107I GGYRCC 1 cut(s) 265
BsrBI CCGCTC 1 cut(s) 1216
BsrDI GCAATG 2 cut(s) 457, 1704
BsrI ACTGG 1 cut(s) 1774
BssECI CCNNGG 3 cut(s) 414, 546, 1592
BssMI GATC 9 cut(s) 226, 344, 896, 946, 1294, 1433, 1597, 1625, 1644
BssNAI GTATAC 1 cut(s) 1781
BssT1I CCWWGG 3 cut(s) 414, 546, 1592
Bst1107I GTATAC 1 cut(s) 1781
Bst2UI CCWGG 2 cut(s) 1398, 1461
Bst4CI ACNGT 6 cut(s) 55, 254, 341, 405, 856, 1798
Bst6I CTCTTC 4 cut(s) 206, 849, 1482, 1704
BstAPI GCANNNNNTGC 2 cut(s) 1694, 1811
BstC8I GCNNGC 3 cut(s) 1150, 1690, 1803
BstDEI CTNAG 8 cut(s) 66, 492, 696, 1038, 1139, 1161, 1204, 1407
BstF5I GGATG 3 cut(s) 745, 895, 1504
BstFNI CGCG 1 cut(s) 637
BstKTI GATC 9 cut(s) 229, 347, 899, 949, 1297, 1436, 1600, 1628, 1647
BstMBI GATC 9 cut(s) 226, 344, 896, 946, 1294, 1433, 1597, 1625, 1644
BstMWI GCNNNNNNNGC 4 cut(s) 245, 1694, 1811, 1820
BstNI CCWGG 2 cut(s) 1398, 1461
BstSCI CCNGG 2 cut(s) 1396, 1459
BstSFI CTRYAG 2 cut(s) 6, 337
BstUI CGCG 1 cut(s) 637
BstV1I GCAGC 4 cut(s) 248, 633, 1246, 1249
BstX2I RGATCY 4 cut(s) 344, 946, 1625, 1644
BstYI RGATCY 4 cut(s) 344, 946, 1625, 1644
BstZ17I GTATAC 1 cut(s) 1781
Bsu36I CCTNAGG 1 cut(s) 696
BtrI CACGTC 1 cut(s) 356
BtsCI GGATG 3 cut(s) 745, 895, 1504
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 4 cut(s) 666, 788, 1158, 1803
Cac8I GCNNGC 3 cut(s) 1150, 1690, 1803
Cfr13I GGNCC 1 cut(s) 1738
CseI GACGC 3 cut(s) 599, 626, 1134
CviAII CATG 1 cut(s) 651
DdeI CTNAG 8 cut(s) 66, 492, 696, 1038, 1139, 1161, 1204, 1407
DpnI GATC 9 cut(s) 228, 346, 898, 948, 1296, 1435, 1599, 1627, 1646
DpnII GATC 9 cut(s) 226, 344, 896, 946, 1294, 1433, 1597, 1625, 1644
DraIII CACNNNGTG 1 cut(s) 1694
Eam1104I CTCTTC 4 cut(s) 206, 849, 1482, 1704
EarI CTCTTC 4 cut(s) 206, 849, 1482, 1704
Ecl136II GAGCTC 1 cut(s) 1761
Eco130I CCWWGG 3 cut(s) 414, 546, 1592
Eco24I GRGCYC 1 cut(s) 1763
Eco32I GATATC 2 cut(s) 664, 1044
Eco47I GGWCC 1 cut(s) 1738
Eco53kI GAGCTC 1 cut(s) 1761
Eco57I CTGAAG 3 cut(s) 117, 198, 812
Eco81I CCTNAGG 1 cut(s) 696
Eco88I CYCGRG 1 cut(s) 1815
EcoICRI GAGCTC 1 cut(s) 1761
EcoRII CCWGG 2 cut(s) 1396, 1459
EcoRV GATATC 2 cut(s) 664, 1044
EcoT14I CCWWGG 3 cut(s) 414, 546, 1592
EcoT38I GRGCYC 1 cut(s) 1763
ErhI CCWWGG 3 cut(s) 414, 546, 1592
FaeI CATG 1 cut(s) 654
FatI CATG 1 cut(s) 650
FauNDI CATATG 1 cut(s) 952
FblI GTMKAC 2 cut(s) 1123, 1780
Fnu4HI GCNGC 4 cut(s) 237, 622, 1260, 1263
FokI GGATG 3 cut(s) 752, 902, 1511
FriOI GRGCYC 1 cut(s) 1763
Fsp4HI GCNGC 4 cut(s) 237, 622, 1260, 1263
FspBI CTAG 3 cut(s) 908, 944, 1593
GluI GCNGC 4 cut(s) 237, 622, 1260, 1263
GsuI CTGGAG 1 cut(s) 1791
HapII CCGG 1 cut(s) 1301
HgaI GACGC 3 cut(s) 599, 626, 1134
Hin1II CATG 1 cut(s) 654
HinfI GANTC 5 cut(s) 187, 216, 301, 500, 755
HpaII CCGG 1 cut(s) 1301
Hpy166II GTNNAC 5 cut(s) 568, 1124, 1604, 1781, 1790
Hpy188III TCNNGA 7 cut(s) 230, 1292, 1301, 1536, 1601, 1675, 1764
Hpy8I GTNNAC 5 cut(s) 568, 1124, 1604, 1781, 1790
HpyAV CCTTC 9 cut(s) 176, 201, 271, 360, 486, 642, 887, 1314, 1513
HpyCH4III ACNGT 6 cut(s) 55, 254, 341, 405, 856, 1798
HpyCH4IV ACGT 4 cut(s) 355, 535, 685, 715
HpyF10VI GCNNNNNNNGC 4 cut(s) 245, 1694, 1811, 1820
HpyF3I CTNAG 8 cut(s) 66, 492, 696, 1038, 1139, 1161, 1204, 1407
HpySE526I ACGT 4 cut(s) 355, 535, 685, 715
Hsp92II CATG 1 cut(s) 654
Kpn2I TCCGGA 1 cut(s) 1300
Kzo9I GATC 9 cut(s) 226, 344, 896, 946, 1294, 1433, 1597, 1625, 1644
LmnI GCTCC 2 cut(s) 1510, 1772
Lsp1109I GCAGC 4 cut(s) 248, 633, 1246, 1249
LweI GCATC 3 cut(s) 223, 1489, 1654
MaeI CTAG 3 cut(s) 908, 944, 1593
MaeII ACGT 4 cut(s) 355, 535, 685, 715
MaeIII GTNAC 1 cut(s) 362
MalI GATC 9 cut(s) 228, 346, 898, 948, 1296, 1435, 1599, 1627, 1646
MbiI CCGCTC 1 cut(s) 1216
MboI GATC 9 cut(s) 226, 344, 896, 946, 1294, 1433, 1597, 1625, 1644
MfeI CAATTG 1 cut(s) 305
MflI RGATCY 4 cut(s) 344, 946, 1625, 1644
MhlI GDGCHC 1 cut(s) 1763
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 4 cut(s) 37, 758, 1096, 1765
MroI TCCGGA 1 cut(s) 1300
MseI TTAA 9 cut(s) 20, 324, 585, 735, 1004, 1350, 1416, 1494, 1652
MspI CCGG 1 cut(s) 1301
MspR9I CCNGG 2 cut(s) 1398, 1461
MunI CAATTG 1 cut(s) 305
Mva1269I GAATGC 3 cut(s) 523, 942, 1057
MvaI CCWGG 2 cut(s) 1398, 1461
MvnI CGCG 1 cut(s) 637
MwoI GCNNNNNNNGC 4 cut(s) 245, 1694, 1811, 1820
NdeI CATATG 1 cut(s) 952
NdeII GATC 9 cut(s) 226, 344, 896, 946, 1294, 1433, 1597, 1625, 1644
NlaIII CATG 1 cut(s) 654
NlaIV GGNNCC 1 cut(s) 267
PaeR7I CTCGAG 1 cut(s) 1815
PcsI WCGNNNNNNNCGW 1 cut(s) 1789
PctI GAATGC 3 cut(s) 523, 942, 1057
PfeI GAWTC 4 cut(s) 216, 301, 500, 755
PflMI CCANNNNNTGG 1 cut(s) 1368
PkrI GCNGC 4 cut(s) 238, 623, 1261, 1264
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
PshBI ATTAAT 2 cut(s) 324, 1416
PsiI TTATAA 1 cut(s) 438
Psp124BI GAGCTC 1 cut(s) 1763
Psp1406I AACGTT 3 cut(s) 535, 685, 715
Psp6I CCWGG 2 cut(s) 1396, 1459
PspGI CCWGG 2 cut(s) 1396, 1459
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 1738
PspXI VCTCGAGB 1 cut(s) 1815
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 4 cut(s) 344, 946, 1625, 1644
SacI GAGCTC 1 cut(s) 1763
SaqAI TTAA 9 cut(s) 20, 324, 585, 735, 1004, 1350, 1416, 1494, 1652
SatI GCNGC 4 cut(s) 237, 622, 1260, 1263
Sau3AI GATC 9 cut(s) 226, 344, 896, 946, 1294, 1433, 1597, 1625, 1644
Sau96I GGNCC 1 cut(s) 1738
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 2 cut(s) 1398, 1461
SduI GDGCHC 1 cut(s) 1763
SfaNI GCATC 3 cut(s) 223, 1489, 1654
SfcI CTRYAG 2 cut(s) 6, 337
Sfr274I CTCGAG 1 cut(s) 1815
SinI GGWCC 1 cut(s) 1738
SlaI CTCGAG 1 cut(s) 1815
SmlI CTYRAG 4 cut(s) 1534, 1718, 1762, 1815
SmoI CTYRAG 4 cut(s) 1534, 1718, 1762, 1815
SsiI CCGC 2 cut(s) 1216, 1667
SspMI CTAG 3 cut(s) 908, 944, 1593
SstI GAGCTC 1 cut(s) 1763
StyD4I CCNGG 2 cut(s) 1396, 1459
StyI CCWWGG 3 cut(s) 414, 546, 1592
TaaI ACNGT 6 cut(s) 55, 254, 341, 405, 856, 1798
TaiI ACGT 4 cut(s) 358, 538, 688, 718
TaqI TCGA 4 cut(s) 146, 229, 1101, 1816
TfiI GAWTC 4 cut(s) 216, 301, 500, 755
Tru1I TTAA 9 cut(s) 20, 324, 585, 735, 1004, 1350, 1416, 1494, 1652
Tru9I TTAA 9 cut(s) 20, 324, 585, 735, 1004, 1350, 1416, 1494, 1652
TscAI CASTG 4 cut(s) 673, 795, 1165, 1803
TseI GCWGC 4 cut(s) 236, 621, 1259, 1262
TspDTI ATGAA 8 cut(s) 158, 468, 588, 624, 906, 1011, 1263, 1601
TspRI CASTG 4 cut(s) 673, 795, 1165, 1803
Van91I CCANNNNNTGG 1 cut(s) 1368
VpaK11BI GGWCC 1 cut(s) 1738
VspI ATTAAT 2 cut(s) 324, 1416
XapI RAATTY 1 cut(s) 61
XhoI CTCGAG 1 cut(s) 1815
XmaJI CCTAGG 1 cut(s) 1592
XmiI GTMKAC 2 cut(s) 1123, 1780
XspI CTAG 3 cut(s) 908, 944, 1593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.