FvH4_3g40250

Ferrous iron transport protein B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002736
Physical Location & Seq
Reverse (-)
34009591 .. 34014841
5251 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40250.t1

Sequence Viewer

Length: 1824 bp
ATGTCTGCAGAAGAAAAATTAAGGTTTAAGTTCAATAAGAAGCTCAAAATAGCAGTTGGAAATTCCAAGTTTTCTAATAGCGGAAGAAAGAGGGCTGAAGATAATGTCAATGACAGTGAGAATGGTAAGAGAGAGAACTATAGATCTAGTGTAAGAGATAAAAAGTTTCATACTGCTGAAGAAGGGAGTCGGGGATCTTTTGATAGAAGGAAGAGAACCTATATTGATCGAGATGCAGCTTGGGAGGCTAACAGTAATGAGGAGGCACCTTATAGGAAGGTTTTATCTAAAAAAGGACAGAATCAATTGAAGTATGGTTATATTAATGAGAAGAACTACAGTAGATCTCCTTCACGTCCTCGTTACAAGTGGGGTTCTAATGAGAGTGATTCTGCAGCTAAACGGTTTTCTCCCAGGGATAGAAGTGCAAAAGTGTATAATAACTTCGGTGATGAAAAGAATAATAGTAGGTTTCCTTCTCGTCCCCGTTCTAAGTGGGGTTCTGATAGATTAGAGAATGCTTCTGAAACTAAACGTTTTTCTCCAAAGGTGAGAAGTGCAAAAGTTTTCAATGATAGAAAAGTTAAGGAGGGTGATGATTTTGGAAATGAAAAGAGATCTCCTTCGCATCCTCGCACTACATGGGGTTCTGATACCACTGCTTCTGATACTAAACGTTTTTCGCCTAAGGTTAGAAGTGAAAAACGTTCCAATAAAACCAAAGTTAAGGATGTTGATGAGATAGAATCTGTTACAAGTGATGGTGGTCTGAGTGCTTCACTGAAGAAACAAAACCAATTAAAACCAGACTTGAGAAAATCCCCAAATATATCTCTTCCAAACACTGTGAAGAAAAAAGCACGCGACAAGAATATCTTGGATGAAGGATCAGAGGTGCTAGATGGTCAGCATAAGAAGAAGAAGCGAATGCGACTAGATCCACATGACATTTCAAACAAACGTCTTGATGATAGTATTGCTACAAATGAAAAATTGAAAGAGAAGGACAAAGATGTTGAGGAAAAAGCTGAGATATCAAAGAATGCACAATTTCGTGCAATCCAACCAAGTCCTTCAATTCTCTCCTATGTTGAAGATAATTTGTTGGGTCGTAGACGCTTGATTGAGCTGAGGAGGGCAGGCTACAACACTGAAATTTCTGCACCATTGGATAATACTCCGTTCTCTACCAGCTCTGATAGAGAGCGGATTGAGGAAAACATATTTAGGAGTAAATTGACATTTTTTGCCGCTGCAAAAGTTTCATCATCATTTCCACCTCCTGATCTTCCAGAGATTGCATTTGCAGGAAGGTCAAATGTTGGGAAATCATCACTACTTAATGCACTTACCAGAAATTGGGGTGTTGCACGGACATCAGACAAACCTGGTCTTACTCAGACTATAAATTTCTTCAATCTTGGATCAAAGCTCTGTTTGGTTGATTTGCCTGGATATGGGTTCGCTTATGCTAAAGAAGAAGTTAAGGATGCTTGGGAGGAGCTTGTGAAGGAGTATGTTTCCACAAGAGTTGGTCTAAAACGAGTGTGCTTACTTATTGATACCAAATGGGGAATGAAACCGAGGGATCGTGAACTCATTGACCTGATGGAAAGATCTCAAACTAAGTATCAGATCTTATTAACAAAGTCGGATGCGGTTTTCCCGATTGATGTAGCACGCCGTGCAATGCAAATTGAAGAGAGCCTCAAGGCAAATAAGTCTGTGGTTCAACCTGTGTTAATGATGAGCTCAAGAACTGGAGCTGGTATACGAAGTTTACGAACAGTGCTAGCAAAAATTGCTCGAGTTGCCAAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

608

Amino Acids

69.1

Weight (kDa)

9.98

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 432 - 550 1.4e-19 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 265
AccB7I CCANNNNNTGG 1 cut(s) 1359
AccBSI CCGCTC 1 cut(s) 1207
AccI GTMKAC 2 cut(s) 1114, 1771
AccII CGCG 1 cut(s) 864
AciI CCGC 4 cut(s) 81, 1207, 1251, 1658
AclI AACGTT 3 cut(s) 535, 676, 706
AclWI GGATC 5 cut(s) 202, 895, 932, 1432, 1596
AcsI RAATTY 3 cut(s) 61, 1155, 1408
AcuI CTGAAG 3 cut(s) 117, 198, 803
AdeI CACNNNGTG 1 cut(s) 1685
AfiI CCNNNNNNNGG 2 cut(s) 1359, 1457
AjiI CACGTC 1 cut(s) 356
AjnI CCWGG 3 cut(s) 413, 1387, 1450
Alw21I GWGCWC 1 cut(s) 1754
AlwI GGATC 5 cut(s) 202, 895, 932, 1432, 1596
Ama87I CYCGRG 1 cut(s) 1806
ApeKI GCWGC 3 cut(s) 236, 395, 1253
ApoI RAATTY 3 cut(s) 61, 1155, 1408
AseI ATTAAT 1 cut(s) 324
AsuHPI GGTGA 3 cut(s) 461, 562, 605
AsuNHI GCTAGC 1 cut(s) 1792
AvaI CYCGRG 1 cut(s) 1806
AxyI CCTNAGG 1 cut(s) 687
BanI GGYRCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 1754
BarI GAAGNNNNNNTAC 6 cut(s) 334, 366, 428, 460, 460, 492
Bbv12I GWGCWC 1 cut(s) 1754
BbvCI CCTCAGC 1 cut(s) 1130
BbvI GCAGC 3 cut(s) 248, 407, 1240
BccI CCATC 3 cut(s) 755, 896, 1603
BceAI ACGGC 1 cut(s) 1668
BciT130I CCWGG 3 cut(s) 415, 1389, 1452
BfaI CTAG 4 cut(s) 147, 899, 935, 1793
BfmI CTRYAG 4 cut(s) 6, 139, 337, 393
BglII AGATCT 5 cut(s) 143, 344, 617, 1616, 1635
BisI GCNGC 4 cut(s) 237, 396, 1251, 1254
BlsI GCNGC 4 cut(s) 238, 397, 1252, 1255
Bme1390I CCNGG 3 cut(s) 415, 1389, 1452
BmeT110I CYCGRG 1 cut(s) 1806
BmgBI CACGTC 1 cut(s) 356
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 3 cut(s) 415, 1389, 1452
BmsI GCATC 4 cut(s) 223, 637, 1480, 1645
BmtI GCTAGC 1 cut(s) 1796
BpmI CTGGAG 1 cut(s) 1782
Bpu10I CCTNAGC 1 cut(s) 1130
BpuEI CTTGAG 3 cut(s) 832, 1694, 1738
BsaJI CCNNGG 3 cut(s) 413, 414, 1583
Bsc4I CCNNNNNNNGG 2 cut(s) 1359, 1457
Bse1I ACTGG 1 cut(s) 1765
Bse21I CCTNAGG 1 cut(s) 687
Bse3DI GCAATG 1 cut(s) 1695
BseBI CCWGG 3 cut(s) 415, 1389, 1452
BseDI CCNNGG 3 cut(s) 413, 414, 1583
BseGI GGATG 5 cut(s) 628, 736, 886, 1495, 1660
BseLI CCNNNNNNNGG 2 cut(s) 1359, 1457
BseMI GCAATG 1 cut(s) 1695
BseMII CTCAG 4 cut(s) 761, 1020, 1121, 1412
BseNI ACTGG 1 cut(s) 1765
BseRI GAGGAG 3 cut(s) 275, 1147, 1514
BseXI GCAGC 3 cut(s) 248, 407, 1240
BsgI GTGCAG 1 cut(s) 1146
Bsh1236I CGCG 1 cut(s) 864
BshNI GGYRCC 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 1754
BsiHKCI CYCGRG 1 cut(s) 1806
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 2 cut(s) 1359, 1457
BsmFI GGGAC 1 cut(s) 468
BsmI GAATGC 3 cut(s) 523, 933, 1048
BsoBI CYCGRG 1 cut(s) 1806
Bsp1286I GDGCHC 1 cut(s) 1754
BspACI CCGC 4 cut(s) 81, 1207, 1251, 1658
BspCNI CTCAG 4 cut(s) 762, 1021, 1122, 1411
BspFNI CGCG 1 cut(s) 864
BspLI GGNNCC 1 cut(s) 267
BspMAI CTGCAG 2 cut(s) 10, 397
BspOI GCTAGC 1 cut(s) 1796
BspPI GGATC 5 cut(s) 202, 895, 932, 1432, 1596
BspT107I GGYRCC 1 cut(s) 265
BsrBI CCGCTC 1 cut(s) 1207
BsrDI GCAATG 1 cut(s) 1695
BsrI ACTGG 1 cut(s) 1765
BssECI CCNNGG 3 cut(s) 413, 414, 1583
BssNAI GTATAC 1 cut(s) 1772
Bst1107I GTATAC 1 cut(s) 1772
Bst2UI CCWGG 3 cut(s) 415, 1389, 1452
Bst4CI ACNGT 6 cut(s) 116, 254, 341, 405, 847, 1789
Bst6I CTCTTC 3 cut(s) 206, 840, 1695
BstAPI GCANNNNNTGC 2 cut(s) 1685, 1802
BstC8I GCNNGC 4 cut(s) 862, 1141, 1681, 1794
BstDEI CTNAG 7 cut(s) 492, 687, 770, 1029, 1130, 1398, 1626
BstF5I GGATG 5 cut(s) 628, 736, 886, 1495, 1660
BstFNI CGCG 1 cut(s) 864
BstMWI GCNNNNNNNGC 4 cut(s) 245, 1685, 1802, 1811
BstNI CCWGG 3 cut(s) 415, 1389, 1452
BstSCI CCNGG 3 cut(s) 413, 1387, 1450
BstSFI CTRYAG 4 cut(s) 6, 139, 337, 393
BstUI CGCG 1 cut(s) 864
BstV1I GCAGC 3 cut(s) 248, 407, 1240
BstX2I RGATCY 7 cut(s) 143, 194, 344, 617, 937, 1616, 1635
BstYI RGATCY 7 cut(s) 143, 194, 344, 617, 937, 1616, 1635
BstZ17I GTATAC 1 cut(s) 1772
Bsu36I CCTNAGG 1 cut(s) 687
BtrI CACGTC 1 cut(s) 356
BtsCI GGATG 5 cut(s) 628, 736, 886, 1495, 1660
BtsI GCAGTG 1 cut(s) 657
BtsIMutI CAGTG 6 cut(s) 121, 657, 779, 843, 1149, 1794
Cac8I GCNNGC 4 cut(s) 862, 1141, 1681, 1794
CseI GACGC 1 cut(s) 1125
CsiI ACCWGGT 1 cut(s) 1387
CspCI CAANNNNNGTGG 2 cut(s) 1513, 1548
CviAII CATG 2 cut(s) 642, 944
DdeI CTNAG 7 cut(s) 492, 687, 770, 1029, 1130, 1398, 1626
DraIII CACNNNGTG 1 cut(s) 1685
Eam1104I CTCTTC 3 cut(s) 206, 840, 1695
EarI CTCTTC 3 cut(s) 206, 840, 1695
Ecl136II GAGCTC 1 cut(s) 1752
Eco24I GRGCYC 1 cut(s) 1754
Eco32I GATATC 1 cut(s) 1035
Eco53kI GAGCTC 1 cut(s) 1752
Eco57I CTGAAG 3 cut(s) 117, 198, 803
Eco81I CCTNAGG 1 cut(s) 687
Eco88I CYCGRG 1 cut(s) 1806
EcoICRI GAGCTC 1 cut(s) 1752
EcoRII CCWGG 3 cut(s) 413, 1387, 1450
EcoRV GATATC 1 cut(s) 1035
EcoT38I GRGCYC 1 cut(s) 1754
FaeI CATG 2 cut(s) 645, 947
FalI AAGNNNNNCTT 2 cut(s) 860, 892
FaqI GGGAC 1 cut(s) 468
FatI CATG 2 cut(s) 641, 943
FblI GTMKAC 2 cut(s) 1114, 1771
Fnu4HI GCNGC 4 cut(s) 237, 396, 1251, 1254
FokI GGATG 5 cut(s) 615, 743, 893, 1502, 1667
FriOI GRGCYC 1 cut(s) 1754
Fsp4HI GCNGC 4 cut(s) 237, 396, 1251, 1254
FspBI CTAG 4 cut(s) 147, 899, 935, 1793
GluI GCNGC 4 cut(s) 237, 396, 1251, 1254
GsuI CTGGAG 1 cut(s) 1782
HgaI GACGC 1 cut(s) 1125
Hin1II CATG 2 cut(s) 645, 947
HinfI GANTC 4 cut(s) 187, 301, 389, 746
HphI GGTGA 3 cut(s) 461, 562, 605
Hpy166II GTNNAC 4 cut(s) 1115, 1595, 1772, 1781
Hpy188III TCNNGA 7 cut(s) 230, 965, 1283, 1292, 1592, 1666, 1755
Hpy8I GTNNAC 4 cut(s) 1115, 1595, 1772, 1781
HpyCH4III ACNGT 6 cut(s) 116, 254, 341, 405, 847, 1789
HpyCH4IV ACGT 5 cut(s) 355, 535, 676, 706, 961
HpyF10VI GCNNNNNNNGC 4 cut(s) 245, 1685, 1802, 1811
HpyF3I CTNAG 7 cut(s) 492, 687, 770, 1029, 1130, 1398, 1626
HpySE526I ACGT 5 cut(s) 355, 535, 676, 706, 961
Hsp92II CATG 2 cut(s) 645, 947
LmnI GCTCC 2 cut(s) 1501, 1763
Lsp1109I GCAGC 3 cut(s) 248, 407, 1240
LweI GCATC 4 cut(s) 223, 637, 1480, 1645
MabI ACCWGGT 1 cut(s) 1387
MaeI CTAG 4 cut(s) 147, 899, 935, 1793
MaeII ACGT 5 cut(s) 355, 535, 676, 706, 961
MaeIII GTNAC 2 cut(s) 362, 751
MbiI CCGCTC 1 cut(s) 1207
MfeI CAATTG 1 cut(s) 305
MflI RGATCY 7 cut(s) 143, 194, 344, 617, 937, 1616, 1635
MhlI GDGCHC 1 cut(s) 1754
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 3 cut(s) 37, 1087, 1632
MspA1I CMGCKG 1 cut(s) 1253
MspR9I CCNGG 3 cut(s) 415, 1389, 1452
MunI CAATTG 1 cut(s) 305
Mva1269I GAATGC 3 cut(s) 523, 933, 1048
MvaI CCWGG 3 cut(s) 415, 1389, 1452
MvnI CGCG 1 cut(s) 864
MwoI GCNNNNNNNGC 4 cut(s) 245, 1685, 1802, 1811
NheI GCTAGC 1 cut(s) 1792
NlaIII CATG 2 cut(s) 645, 947
NlaIV GGNNCC 1 cut(s) 267
PaeR7I CTCGAG 1 cut(s) 1806
PasI CCCWGGG 1 cut(s) 414
PcsI WCGNNNNNNNCGW 1 cut(s) 1780
PctI GAATGC 3 cut(s) 523, 933, 1048
PfeI GAWTC 3 cut(s) 301, 389, 746
PflMI CCANNNNNTGG 1 cut(s) 1359
PkrI GCNGC 4 cut(s) 238, 397, 1252, 1255
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
PshBI ATTAAT 1 cut(s) 324
Psp124BI GAGCTC 1 cut(s) 1754
Psp1406I AACGTT 3 cut(s) 535, 676, 706
Psp6I CCWGG 3 cut(s) 413, 1387, 1450
PspGI CCWGG 3 cut(s) 413, 1387, 1450
PspN4I GGNNCC 1 cut(s) 267
PspXI VCTCGAGB 1 cut(s) 1806
PstI CTGCAG 2 cut(s) 10, 397
PsuI RGATCY 7 cut(s) 143, 194, 344, 617, 937, 1616, 1635
SacI GAGCTC 1 cut(s) 1754
SatI GCNGC 4 cut(s) 237, 396, 1251, 1254
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 3 cut(s) 415, 1389, 1452
SduI GDGCHC 1 cut(s) 1754
SexAI ACCWGGT 1 cut(s) 1387
SfaNI GCATC 4 cut(s) 223, 637, 1480, 1645
SfcI CTRYAG 4 cut(s) 6, 139, 337, 393
Sfr274I CTCGAG 1 cut(s) 1806
SlaI CTCGAG 1 cut(s) 1806
SmlI CTYRAG 4 cut(s) 811, 1709, 1753, 1806
SmoI CTYRAG 4 cut(s) 811, 1709, 1753, 1806
SsiI CCGC 4 cut(s) 81, 1207, 1251, 1658
SspMI CTAG 4 cut(s) 147, 899, 935, 1793
SstI GAGCTC 1 cut(s) 1754
StyD4I CCNGG 3 cut(s) 413, 1387, 1450
TaaI ACNGT 6 cut(s) 116, 254, 341, 405, 847, 1789
TaiI ACGT 5 cut(s) 358, 538, 679, 709, 964
TaqI TCGA 2 cut(s) 229, 1807
TauI GCSGC 1 cut(s) 1253
TfiI GAWTC 3 cut(s) 301, 389, 746
TscAI CASTG 6 cut(s) 121, 664, 786, 850, 1156, 1794
TseI GCWGC 3 cut(s) 236, 395, 1253
TspDTI ATGAA 7 cut(s) 158, 468, 624, 897, 1002, 1254, 1592
TspGWI ACGGA 2 cut(s) 1170, 1387
TspRI CASTG 6 cut(s) 121, 664, 786, 850, 1156, 1794
Van91I CCANNNNNTGG 1 cut(s) 1359
VspI ATTAAT 1 cut(s) 324
XapI RAATTY 3 cut(s) 61, 1155, 1408
XhoI CTCGAG 1 cut(s) 1806
XmiI GTMKAC 2 cut(s) 1114, 1771
XspI CTAG 4 cut(s) 147, 899, 935, 1793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.