Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008676.1

Orthogroup ID

OG0002736

Physical Location & Seq

Genomic Coordinates Reverse (-)

79020 .. 81598

Gene Structure 2579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008676.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

atgccttcagacttggttatgcaagaactgaactggagcagtgatccaattcgcggtttacagttgggtctggttttcaaggcttcgtgctttgggtggtcgccgttgaggttcaaaggagtccggtgggattcaatcatcagcttgaatttcaatatcttcagccagggctctgaagtgtatgccagacaaagattttcctttaatgaggaggcaccttataggaaggttttatctaaaaaaggacagaatcaattgaagtattgttatattaatgagaagaactacagtagatctccttcacgtcctcgttacaagcggggttctaatgagagtgcttctgagactaaacggttttctcccaaggagagaagtgcaaaagtttataacgactttggcaatgaaaagaataatagtaggtttccttctcgtccccgttctaagtggggttctgatggattagagaatgcttctgaaactaaacgtttttctcccaaggttagaagtgcaaaagtttacaatgaaacaaaatttaaggaggctgataattttggtaatattaagagtagcagtagatctacttcgcgtcctcactctacatggggttctgataagcaatgttctgaaactaaacgtttttctcctaaggttagaagtgagaaacgttccaataaaaccaaagttaaggatgatgataagatggaatccattacaactgatgatggtcggagtgcttcactgaagaaacataaccaaataaaaccagacttgcaaaaatccccaaatatatctcttccaaatactgtgaagaaaaaagcacggaacaagaatatctcggatgaaggatcagaggtgctagatggtcagccaaagaagaagaagcaaattcgactagatccatacgacatttcaaataaacgtcttgatgatagtattgctacaaatggaaaggaaaacgctgggatatcaaagaacacacaatttcgtgcaatccaaccaagtctgtcagtcctctcctatgtcgaagataatttgttgggtcgtagacgcttgattgaactgaagagggcaggctacaacactgagctttctgcaccattggataatactccattctctatcagctccgaaagagttttgaggaaaatgtatgtaatgcaagtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

388

Amino Acids

44.43

Weight (kDa)

10.03

Isoelectric Point (pI)

61.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58370 AT5G58370 AT5G58370
fragaria_vesca	FvH4_3g40250 FvH4_3g40250
malus_domestica	MD03G1054800.v1.1
prunus_persica	Prupe.6G043400_v2.0.a1
pyrus_communis	pycom03g04350
rosa_chinensis	RchiOBHm_Chr5g0072471 RchiOBHm_Chr5g0072511 RchiOBHm_Chr5g0073721
rosa_laevigata	RLG00000036302 RLG00000036304 RLG00000036308
rosa_multiflora	Rmu_sc0004501.1_g000007 Rmu_sc0004594.1_g000018 Rmu_sc0008676.1_g000008 Rmu_sc0008676.1_g000023 Rmu_sc0009248.1_g000009
rosa_roxburghii	Rroxscaffold_1G00007580 Rroxscaffold_1G00008640 Rroxscaffold_1G00008730
rosa_rugosa	Rorug05G0418400 Rorug05G0430400
rosa_samantha	Rh5AG475000 Rh5AG483100 Rh5BG495000 Rh5BG495400 Rh5BG504100 Rh5CG518900 Rh5CG519200 Rh5CG527600 Rh5DG507100 Rh5DG507400 Rh5DG516200
rosa_wichuraiana	Rw5G044100 Rw5G044130 Rw5G044890 Rw5G044910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	387
AccB1I	GGYRCC	1 cut(s)	214
AccI	GTMKAC	1 cut(s)	1045
AccII	CGCG	2 cut(s)	54, 586
AciI	CCGC	2 cut(s)	54, 319
AclI	AACGTT	3 cut(s)	484, 634, 664
AclWI	GGATC	3 cut(s)	38, 853, 890
AcsI	RAATTY	3 cut(s)	148, 530, 885
AcuI	CTGAAG	4 cut(s)	145, 195, 761, 1082
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	8 cut(s)	79, 115, 135, 148, 154, 259, 912, 1058
AjiI	CACGTC	1 cut(s)	305
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	3 cut(s)	144, 1087, 1125
AluI	AGCT	3 cut(s)	144, 1087, 1125
Alw26I	GTCTC	1 cut(s)	338
AlwI	GGATC	3 cut(s)	38, 853, 890
ApoI	RAATTY	3 cut(s)	148, 530, 885
AseI	ATTAAT	1 cut(s)	273
AxyI	CCTNAGG	1 cut(s)	645
BanI	GGYRCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	173
BarI	GAAGNNNNNNTAC	6 cut(s)	283, 315, 409, 441, 565, 597
BccI	CCATC	4 cut(s)	449, 694, 716, 854
BceAI	ACGGC	1 cut(s)	88
BciT130I	CCWGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	338
BfaI	CTAG	3 cut(s)	857, 893, 1165
BfmI	CTRYAG	1 cut(s)	286
BglII	AGATCT	2 cut(s)	293, 575
Bme1390I	CCNGG	1 cut(s)	167
BmgBI	CACGTC	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	167
BpmI	CTGGAG	1 cut(s)	55
BsaJI	CCNNGG	3 cut(s)	166, 363, 495
BsaWI	WCCGGW	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	38
Bse21I	CCTNAGG	1 cut(s)	645
Bse3DI	GCAATG	2 cut(s)	406, 623
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	3 cut(s)	166, 363, 495
BseGI	GGATG	2 cut(s)	694, 844
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	2 cut(s)	406, 623
BseMII	CTCAG	2 cut(s)	333, 1074
BseNI	ACTGG	1 cut(s)	38
BseRI	GAGGAG	1 cut(s)	224
BseYI	CCCAGC	1 cut(s)	959
BsgI	GTGCAG	1 cut(s)	1077
Bsh1236I	CGCG	2 cut(s)	54, 586
BshNI	GGYRCC	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	124
BslFI	GGGAC	1 cut(s)	417
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	417
BsmI	GAATGC	1 cut(s)	472
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	5 cut(s)	43, 293, 575, 845, 895
BspACI	CCGC	2 cut(s)	54, 319
BspCNI	CTCAG	2 cut(s)	334, 1075
BspFNI	CGCG	2 cut(s)	54, 586
BspLI	GGNNCC	1 cut(s)	216
BspPI	GGATC	3 cut(s)	38, 853, 890
BspT107I	GGYRCC	1 cut(s)	214
BsrDI	GCAATG	2 cut(s)	406, 623
BsrI	ACTGG	1 cut(s)	38
BssECI	CCNNGG	3 cut(s)	166, 363, 495
BssMI	GATC	5 cut(s)	43, 293, 575, 845, 895
BssT1I	CCWWGG	2 cut(s)	363, 495
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	4 cut(s)	63, 290, 354, 805
Bst6I	CTCTTC	2 cut(s)	798, 1058
BstC8I	GCNNGC	1 cut(s)	1072
BstDEI	CTNAG	4 cut(s)	342, 441, 645, 1083
BstF5I	GGATG	2 cut(s)	694, 844
BstFNI	CGCG	2 cut(s)	54, 586
BstKTI	GATC	5 cut(s)	46, 296, 578, 848, 898
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	5 cut(s)	43, 293, 575, 845, 895
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	165
BstSFI	CTRYAG	1 cut(s)	286
BstUI	CGCG	2 cut(s)	54, 586
BstX2I	RGATCY	3 cut(s)	293, 575, 895
BstYI	RGATCY	3 cut(s)	293, 575, 895
Bsu36I	CCTNAGG	1 cut(s)	645
BtrI	CACGTC	1 cut(s)	305
BtsCI	GGATG	2 cut(s)	694, 844
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	3 cut(s)	46, 737, 1080
Cac8I	GCNNGC	1 cut(s)	1072
CseI	GACGC	2 cut(s)	575, 1056
CviAII	CATG	1 cut(s)	600
CviJI	RGCY	9 cut(s)	83, 144, 165, 171, 542, 868, 1074, 1087, 1125
CviKI_1	RGCY	9 cut(s)	83, 144, 165, 171, 542, 868, 1074, 1087, 1125
DdeI	CTNAG	4 cut(s)	342, 441, 645, 1083
DpnI	GATC	5 cut(s)	45, 295, 577, 847, 897
DpnII	GATC	5 cut(s)	43, 293, 575, 845, 895
Eam1104I	CTCTTC	2 cut(s)	798, 1058
EarI	CTCTTC	2 cut(s)	798, 1058
Eco130I	CCWWGG	2 cut(s)	363, 495
Eco24I	GRGCYC	1 cut(s)	173
Eco32I	GATATC	1 cut(s)	966
Eco57I	CTGAAG	4 cut(s)	145, 195, 761, 1082
Eco81I	CCTNAGG	1 cut(s)	645
EcoRII	CCWGG	1 cut(s)	165
EcoRV	GATATC	1 cut(s)	966
EcoT14I	CCWWGG	2 cut(s)	363, 495
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	2 cut(s)	363, 495
FaeI	CATG	1 cut(s)	603
FaqI	GGGAC	1 cut(s)	417
FatI	CATG	1 cut(s)	599
FauI	CCCGC	1 cut(s)	312
FblI	GTMKAC	1 cut(s)	1045
FokI	GGATG	2 cut(s)	701, 851
FriOI	GRGCYC	1 cut(s)	173
FspBI	CTAG	3 cut(s)	857, 893, 1165
GsaI	CCCAGC	1 cut(s)	963
GsuI	CTGGAG	1 cut(s)	55
HapII	CCGG	1 cut(s)	124
HgaI	GACGC	2 cut(s)	575, 1056
Hin1II	CATG	1 cut(s)	603
HinfI	GANTC	4 cut(s)	120, 131, 250, 704
HpaII	CCGG	1 cut(s)	124
Hpy166II	GTNNAC	3 cut(s)	59, 517, 1046
Hpy188III	TCNNGA	1 cut(s)	923
Hpy8I	GTNNAC	3 cut(s)	59, 517, 1046
HpyAV	CCTTC	5 cut(s)	15, 220, 309, 435, 836
HpyCH4III	ACNGT	4 cut(s)	63, 290, 354, 805
HpyCH4IV	ACGT	5 cut(s)	304, 484, 634, 664, 919
HpyCH4V	TGCA	7 cut(s)	22, 377, 509, 772, 989, 1094, 1159
HpyF3I	CTNAG	4 cut(s)	342, 441, 645, 1083
HpySE526I	ACGT	5 cut(s)	304, 484, 634, 664, 919
Hsp92II	CATG	1 cut(s)	603
Kzo9I	GATC	5 cut(s)	43, 293, 575, 845, 895
LmnI	GCTCC	2 cut(s)	36, 1130
LpnPI	CCDG	9 cut(s)	19, 56, 137, 152, 179, 199, 777, 945, 1056
MaeI	CTAG	3 cut(s)	857, 893, 1165
MaeII	ACGT	5 cut(s)	304, 484, 634, 664, 919
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	5 cut(s)	45, 295, 577, 847, 897
MboI	GATC	5 cut(s)	43, 293, 575, 845, 895
MboII	GAAGA	9 cut(s)	151, 292, 754, 785, 820, 886, 889, 1037, 1075
MfeI	CAATTG	1 cut(s)	254
MflI	RGATCY	3 cut(s)	293, 575, 895
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	8 cut(s)	48, 148, 254, 530, 547, 885, 980, 1030
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	2 cut(s)	707, 1018
MseI	TTAA	5 cut(s)	204, 273, 534, 561, 684
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	1 cut(s)	167
MunI	CAATTG	1 cut(s)	254
Mva1269I	GAATGC	1 cut(s)	472
MvaI	CCWGG	1 cut(s)	167
MvnI	CGCG	2 cut(s)	54, 586
NdeII	GATC	5 cut(s)	43, 293, 575, 845, 895
NlaIII	CATG	1 cut(s)	603
NlaIV	GGNNCC	1 cut(s)	216
PctI	GAATGC	1 cut(s)	472
PfeI	GAWTC	3 cut(s)	131, 250, 704
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PshBI	ATTAAT	1 cut(s)	273
PsiI	TTATAA	1 cut(s)	387
Psp1406I	AACGTT	3 cut(s)	484, 634, 664
Psp6I	CCWGG	1 cut(s)	165
PspFI	CCCAGC	1 cut(s)	959
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	216
PsuI	RGATCY	3 cut(s)	293, 575, 895
SaqAI	TTAA	5 cut(s)	204, 273, 534, 561, 684
Sau3AI	GATC	5 cut(s)	43, 293, 575, 845, 895
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	173
SfcI	CTRYAG	1 cut(s)	286
Sse9I	AATT	8 cut(s)	48, 148, 254, 530, 547, 885, 980, 1030
SsiI	CCGC	2 cut(s)	54, 319
SspI	AATATT	1 cut(s)	559
SspMI	CTAG	3 cut(s)	857, 893, 1165
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	2 cut(s)	363, 495
TaaI	ACNGT	4 cut(s)	63, 290, 354, 805
TaiI	ACGT	5 cut(s)	307, 487, 637, 667, 922
TaqI	TCGA	2 cut(s)	889, 1023
TasI	AATT	8 cut(s)	48, 148, 254, 530, 547, 885, 980, 1030
TfiI	GAWTC	3 cut(s)	131, 250, 704
Tru1I	TTAA	5 cut(s)	204, 273, 534, 561, 684
Tru9I	TTAA	5 cut(s)	204, 273, 534, 561, 684
TscAI	CASTG	3 cut(s)	46, 744, 1087
TspDTI	ATGAA	3 cut(s)	417, 537, 855
TspGWI	ACGGA	1 cut(s)	835
TspRI	CASTG	3 cut(s)	46, 744, 1087
VspI	ATTAAT	1 cut(s)	273
XapI	RAATTY	3 cut(s)	148, 530, 885
XmiI	GTMKAC	1 cut(s)	1045
XspI	CTAG	3 cut(s)	857, 893, 1165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.