Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002736

Physical Location & Seq

Genomic Coordinates Reverse (-)

72608475 .. 72611032

Gene Structure 2558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG519200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGCAAGAACTGAACTGGAGCAGTGATCCAATTCGCGGTTTACAGTTGGGTCTGGTTTTCAAGGCTTCGTGCTTTGGGTGGTCGCCGTTGAGGTTCAAAGGAGTCCGGTGGGATTCAATCATCAGCTTGAATTTCAATATCTTCAGCCAGGGCTCTGAAGTGTATGCCAAACGAAGATTTTCCTTGTGGGGAGTTTTTGATAGAAGGAAGAGAATCTATGTTGATCGAGATGCAGCTTGGGAGGCTAACAGTAATGAGGAGGCACCTTATAGGAAGGTTTTATCTAAAAAAGGACAGAATCAATTGAAGTATTGTTATATTAATGAGAAGAACTACAGTAGATCTCCTTCACGTCCTCGTTACAAGCGGGGTTCTAATGAGAGTGCTTCTGAGACTAAACGGTTTTCTCCCAAGGAGAGAAGTGCAAAAGTTTATAACAACTTCGGCAATGAAAAGAATAATAGTAGGTTTCCTTCTCGTCCCCGTTCTAAGTGGGGTTCTGATGGATTAGAGAATGCTTCTGAAACTAAACGTTTTTCTCCCAAGGTTAGAAGTGCAAAAGTTTACAATGAAACAAAATTTAAGGAGGCTGATAATTTTGGTAATATTAAGAGTAGCAGTAGATCTACTTCGCGTCCTCGCTCTACATGGGGTTCTGATAAGCAATGTTCTGAAACTAAACGTTTTTCTCCTAAGGTTAGAAGTGAGAAACGTTCCAATAAAACCAAAGTTAAGGATGATGATAAGATGGAATCCATTACAACTGATGATGGTCGGAGTGCTTCACTGAAGAAACATAACCAAATAAAACCAGACTTGCAAAAATCCCCAAATATATCTCTTCCAAATACTGTGAAGAAAAAAGCACGGAACAAGAATATCTCGGATGAAGGATCAGAGGTGCTAGATGGTCAGCCAAAGAAGAAGCAAATTCGACTAGATCCATACGACATTTCAAATAAACGTCTTGATGATAGTATTGCTACAAATGTTTTCTTTTCATGCAGAAAACTTAAAGGAAAGGAAAACGCTGAGATATCAAAGAACGCACAATTTCGTGCAATCCAACCAAGTCTGTCAGTCCTCTCCTATGTCGAAGATAATACGATTGAACTGAAGAGGGCAGGCTACAACACTGAGCTTTCTGCACCATTGGATAATACTCCATTCTCTATCAGCTCCGAAAGAGTTTTGAGGAAAATGTATGTAATGCAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

406

Amino Acids

46.73

Weight (kDa)

10.03

Isoelectric Point (pI)

60.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58370 AT5G58370 AT5G58370
fragaria_vesca	FvH4_3g40250 FvH4_3g40250
malus_domestica	MD03G1054800.v1.1
prunus_persica	Prupe.6G043400_v2.0.a1
pyrus_communis	pycom03g04350
rosa_chinensis	RchiOBHm_Chr5g0072471 RchiOBHm_Chr5g0072511 RchiOBHm_Chr5g0073721
rosa_laevigata	RLG00000036302 RLG00000036304 RLG00000036308
rosa_multiflora	Rmu_sc0004501.1_g000007 Rmu_sc0004594.1_g000018 Rmu_sc0008676.1_g000008 Rmu_sc0008676.1_g000023 Rmu_sc0009248.1_g000009
rosa_roxburghii	Rroxscaffold_1G00007580 Rroxscaffold_1G00008640 Rroxscaffold_1G00008730
rosa_rugosa	Rorug05G0418400 Rorug05G0430400
rosa_samantha	Rh5AG475000 Rh5AG483100 Rh5BG495000 Rh5BG495400 Rh5BG504100 Rh5CG518900 Rh5CG519200 Rh5CG527600 Rh5DG507100 Rh5DG507400 Rh5DG516200
rosa_wichuraiana	Rw5G044100 Rw5G044130 Rw5G044890 Rw5G044910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	435
AccB1I	GGYRCC	1 cut(s)	262
AccII	CGCG	2 cut(s)	36, 634
AciI	CCGC	2 cut(s)	36, 367
AclI	AACGTT	3 cut(s)	532, 682, 712
AclWI	GGATC	3 cut(s)	20, 901, 935
AcsI	RAATTY	3 cut(s)	130, 578, 930
AcuI	CTGAAG	4 cut(s)	127, 177, 809, 1136
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	8 cut(s)	61, 97, 117, 130, 136, 307, 957, 1112
AjiI	CACGTC	1 cut(s)	353
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	4 cut(s)	126, 236, 1141, 1179
AluI	AGCT	4 cut(s)	126, 236, 1141, 1179
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	3 cut(s)	20, 901, 935
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	3 cut(s)	130, 578, 930
AseI	ATTAAT	1 cut(s)	321
Asp700I	GAANNNNTTC	1 cut(s)	178
AxyI	CCTNAGG	1 cut(s)	693
BanI	GGYRCC	1 cut(s)	262
BanII	GRGCYC	1 cut(s)	155
BarI	GAAGNNNNNNTAC	6 cut(s)	331, 363, 457, 489, 613, 645
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	4 cut(s)	497, 742, 764, 902
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	3 cut(s)	905, 938, 1219
BfmI	CTRYAG	1 cut(s)	334
BglII	AGATCT	2 cut(s)	341, 623
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	149
BmgBI	CACGTC	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	37
BsaJI	CCNNGG	3 cut(s)	148, 411, 543
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	20
Bse21I	CCTNAGG	1 cut(s)	693
Bse3DI	GCAATG	2 cut(s)	454, 671
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	3 cut(s)	148, 411, 543
BseGI	GGATG	2 cut(s)	742, 892
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMI	GCAATG	2 cut(s)	454, 671
BseMII	CTCAG	3 cut(s)	381, 1023, 1128
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	245
BsgI	GTGCAG	1 cut(s)	1131
Bsh1236I	CGCG	2 cut(s)	36, 634
BshNI	GGYRCC	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	106
BslFI	GGGAC	1 cut(s)	465
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	386
BsmFI	GGGAC	1 cut(s)	465
BsmI	GAATGC	1 cut(s)	520
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp143I	GATC	6 cut(s)	25, 223, 341, 623, 893, 940
BspACI	CCGC	2 cut(s)	36, 367
BspCNI	CTCAG	3 cut(s)	382, 1024, 1129
BspFNI	CGCG	2 cut(s)	36, 634
BspLI	GGNNCC	1 cut(s)	264
BspPI	GGATC	3 cut(s)	20, 901, 935
BspT107I	GGYRCC	1 cut(s)	262
BsrDI	GCAATG	2 cut(s)	454, 671
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	148, 411, 543
BssMI	GATC	6 cut(s)	25, 223, 341, 623, 893, 940
BssT1I	CCWWGG	2 cut(s)	411, 543
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	5 cut(s)	45, 251, 338, 402, 853
Bst6I	CTCTTC	3 cut(s)	203, 846, 1112
BstC8I	GCNNGC	1 cut(s)	1126
BstDEI	CTNAG	5 cut(s)	390, 489, 693, 1032, 1137
BstF5I	GGATG	2 cut(s)	742, 892
BstFNI	CGCG	2 cut(s)	36, 634
BstKTI	GATC	6 cut(s)	28, 226, 344, 626, 896, 943
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	6 cut(s)	25, 223, 341, 623, 893, 940
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstSFI	CTRYAG	1 cut(s)	334
BstUI	CGCG	2 cut(s)	36, 634
BstV1I	GCAGC	1 cut(s)	245
BstX2I	RGATCY	3 cut(s)	341, 623, 940
BstYI	RGATCY	3 cut(s)	341, 623, 940
Bsu36I	CCTNAGG	1 cut(s)	693
BtrI	CACGTC	1 cut(s)	353
BtsCI	GGATG	2 cut(s)	742, 892
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	3 cut(s)	28, 785, 1134
Cac8I	GCNNGC	1 cut(s)	1126
CseI	GACGC	1 cut(s)	623
CviAII	CATG	2 cut(s)	648, 1002
DdeI	CTNAG	5 cut(s)	390, 489, 693, 1032, 1137
DpnI	GATC	6 cut(s)	27, 225, 343, 625, 895, 942
DpnII	GATC	6 cut(s)	25, 223, 341, 623, 893, 940
Eam1104I	CTCTTC	3 cut(s)	203, 846, 1112
EarI	CTCTTC	3 cut(s)	203, 846, 1112
Eco130I	CCWWGG	2 cut(s)	411, 543
Eco24I	GRGCYC	1 cut(s)	155
Eco32I	GATATC	1 cut(s)	1038
Eco57I	CTGAAG	4 cut(s)	127, 177, 809, 1136
Eco81I	CCTNAGG	1 cut(s)	693
EcoRII	CCWGG	1 cut(s)	147
EcoRV	GATATC	1 cut(s)	1038
EcoT14I	CCWWGG	2 cut(s)	411, 543
EcoT38I	GRGCYC	1 cut(s)	155
ErhI	CCWWGG	2 cut(s)	411, 543
FaeI	CATG	2 cut(s)	651, 1005
FaqI	GGGAC	1 cut(s)	465
FatI	CATG	2 cut(s)	647, 1001
FauI	CCCGC	1 cut(s)	360
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	2 cut(s)	749, 899
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	3 cut(s)	905, 938, 1219
GluI	GCNGC	1 cut(s)	234
GsuI	CTGGAG	1 cut(s)	37
HapII	CCGG	1 cut(s)	106
HgaI	GACGC	1 cut(s)	623
Hin1II	CATG	2 cut(s)	651, 1005
HinfI	GANTC	5 cut(s)	102, 113, 213, 298, 752
HpaII	CCGG	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	41, 565
Hpy188III	TCNNGA	2 cut(s)	227, 968
Hpy8I	GTNNAC	2 cut(s)	41, 565
HpyAV	CCTTC	5 cut(s)	198, 268, 357, 483, 884
HpyCH4III	ACNGT	5 cut(s)	45, 251, 338, 402, 853
HpyCH4IV	ACGT	5 cut(s)	352, 532, 682, 712, 964
HpyCH4V	TGCA	9 cut(s)	4, 233, 425, 557, 820, 1005, 1061, 1148, 1213
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	5 cut(s)	390, 489, 693, 1032, 1137
HpySE526I	ACGT	5 cut(s)	352, 532, 682, 712, 964
Hsp92II	CATG	2 cut(s)	651, 1005
Kzo9I	GATC	6 cut(s)	25, 223, 341, 623, 893, 940
LmnI	GCTCC	2 cut(s)	18, 1184
LpnPI	CCDG	6 cut(s)	38, 119, 134, 161, 825, 1110
Lsp1109I	GCAGC	1 cut(s)	245
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	3 cut(s)	905, 938, 1219
MaeII	ACGT	5 cut(s)	352, 532, 682, 712, 964
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	6 cut(s)	27, 225, 343, 625, 895, 942
MboI	GATC	6 cut(s)	25, 223, 341, 623, 893, 940
MfeI	CAATTG	1 cut(s)	302
MflI	RGATCY	3 cut(s)	341, 623, 940
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	7 cut(s)	30, 130, 302, 578, 595, 930, 1052
MlyI	GAGTC	1 cut(s)	111
MmeI	TCCRAC	2 cut(s)	755, 1090
MroXI	GAANNNNTTC	1 cut(s)	178
MseI	TTAA	5 cut(s)	321, 582, 609, 732, 1014
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	149
MunI	CAATTG	1 cut(s)	302
Mva1269I	GAATGC	1 cut(s)	520
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	2 cut(s)	36, 634
MwoI	GCNNNNNNNGC	1 cut(s)	242
NdeII	GATC	6 cut(s)	25, 223, 341, 623, 893, 940
NlaIII	CATG	2 cut(s)	651, 1005
NlaIV	GGNNCC	1 cut(s)	264
PctI	GAATGC	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	178
PfeI	GAWTC	4 cut(s)	113, 213, 298, 752
PkrI	GCNGC	1 cut(s)	235
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
PshBI	ATTAAT	1 cut(s)	321
PsiI	TTATAA	1 cut(s)	435
Psp1406I	AACGTT	3 cut(s)	532, 682, 712
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	264
PsuI	RGATCY	3 cut(s)	341, 623, 940
SaqAI	TTAA	5 cut(s)	321, 582, 609, 732, 1014
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	6 cut(s)	25, 223, 341, 623, 893, 940
SchI	GAGTC	1 cut(s)	111
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	155
SfaNI	GCATC	1 cut(s)	220
SfcI	CTRYAG	1 cut(s)	334
Sse9I	AATT	7 cut(s)	30, 130, 302, 578, 595, 930, 1052
SsiI	CCGC	2 cut(s)	36, 367
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	3 cut(s)	905, 938, 1219
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	2 cut(s)	411, 543
TaaI	ACNGT	5 cut(s)	45, 251, 338, 402, 853
TaiI	ACGT	5 cut(s)	355, 535, 685, 715, 967
TaqI	TCGA	3 cut(s)	226, 934, 1095
TasI	AATT	7 cut(s)	30, 130, 302, 578, 595, 930, 1052
TfiI	GAWTC	4 cut(s)	113, 213, 298, 752
Tru1I	TTAA	5 cut(s)	321, 582, 609, 732, 1014
Tru9I	TTAA	5 cut(s)	321, 582, 609, 732, 1014
TscAI	CASTG	3 cut(s)	28, 792, 1141
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	4 cut(s)	465, 585, 903, 990
TspGWI	ACGGA	1 cut(s)	883
TspRI	CASTG	3 cut(s)	28, 792, 1141
VspI	ATTAAT	1 cut(s)	321
XapI	RAATTY	3 cut(s)	130, 578, 930
XmnI	GAANNNNTTC	1 cut(s)	178
XspI	CTAG	3 cut(s)	905, 938, 1219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.