RLG00000036308

Ferrous iron transport protein B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002736
Physical Location & Seq
Reverse (-)
78765723 .. 78770099
4377 bp
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UTR
Exon/CDS
Intron
RLM00000036308

Sequence Viewer

Length: 474 bp
ATGTTGATCGAGATGCAGCTTGGGAGGATAACAGTAATGAGGAGGCACCTTATAGGAAGAAAACTTAAAGGAAAGGAAAATGATGTTGAGGAAAACTCTGAGATATCACAAAACGCACAATTTCGTGCAATCCAACCAAGTCCGTCAATCCTCTCTTATGTCGAAAATAATTTGGGTTGTAGACGCTTGATTGAGCTGAAGAGGGCAGGCTACAACACTGAGCTTTCTGCACCATTGGATAATACTCCTTTCTCTATCAGCTCTGAAAGAGAGCGAATTGAGGAAAATATTTTTAGGAGTAAATTGACATTTTTTGCTGCTGTAAAAGTTTCATCATCATTTCCTCCTCTTGATCTTCCAGAGATTGCATTTGCAGGAAGGTCGAATGTTGGGAAATCGTCACTACTTTATGCACTAACCAGAAATTGGGATGTTGTACGAACATCAGATAAGCCTCATCTTACTCAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

158

Amino Acids

17.87

Weight (kDa)

9.37

Isoelectric Point (pI)

61.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 121 - 156 4e-07 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 45
AccB7I CCANNNNNTGG 1 cut(s) 426
AccI GTMKAC 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 218
AfaI GTAC 1 cut(s) 438
AfiI CCNNNNNNNGG 1 cut(s) 426
AluBI AGCT 4 cut(s) 19, 196, 223, 261
AluI AGCT 4 cut(s) 19, 196, 223, 261
ApeKI GCWGC 2 cut(s) 16, 317
BanI GGYRCC 1 cut(s) 45
BbvI GCAGC 2 cut(s) 28, 304
BcgI CGANNNNNNTGC 2 cut(s) 363, 397
BisI GCNGC 2 cut(s) 17, 318
BlsI GCNGC 2 cut(s) 18, 319
BmiI GGNNCC 1 cut(s) 47
BmsI GCATC 1 cut(s) 3
BplI GAGNNNNNCTC 2 cut(s) 80, 112
Bsc4I CCNNNNNNNGG 1 cut(s) 426
BseGI GGATG 1 cut(s) 436
BseLI CCNNNNNNNGG 1 cut(s) 426
BseMII CTCAG 2 cut(s) 90, 210
BseRI GAGGAG 2 cut(s) 55, 336
BseXI GCAGC 2 cut(s) 28, 304
BsgI GTGCAG 1 cut(s) 213
BshNI GGYRCC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 426
Bsp143I GATC 2 cut(s) 6, 352
BspCNI CTCAG 2 cut(s) 91, 211
BspLI GGNNCC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 45
BssMI GATC 2 cut(s) 6, 352
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 3 cut(s) 99, 219, 465
BstF5I GGATG 1 cut(s) 436
BstKTI GATC 2 cut(s) 9, 355
BstMBI GATC 2 cut(s) 6, 352
BstV1I GCAGC 2 cut(s) 28, 304
BtsCI GGATG 1 cut(s) 436
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 208
CseI GACGC 1 cut(s) 192
Csp6I GTAC 1 cut(s) 437
CviJI RGCY 6 cut(s) 19, 196, 210, 223, 261, 454
CviKI_1 RGCY 6 cut(s) 19, 196, 210, 223, 261, 454
CviQI GTAC 1 cut(s) 437
DdeI CTNAG 3 cut(s) 99, 219, 465
DpnI GATC 2 cut(s) 8, 354
DpnII GATC 2 cut(s) 6, 352
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Eco32I GATATC 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 218
EcoRV GATATC 1 cut(s) 105
FaiI YATR 3 cut(s) 53, 159, 411
FblI GTMKAC 1 cut(s) 181
Fnu4HI GCNGC 2 cut(s) 17, 318
FokI GGATG 1 cut(s) 443
Fsp4HI GCNGC 2 cut(s) 17, 318
GluI GCNGC 2 cut(s) 17, 318
HgaI GACGC 1 cut(s) 192
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 3 cut(s) 100, 265, 448
Hpy188III TCNNGA 3 cut(s) 10, 350, 359
Hpy8I GTNNAC 1 cut(s) 182
HpyAV CCTTC 1 cut(s) 372
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 6 cut(s) 16, 128, 230, 368, 374, 413
HpyF3I CTNAG 3 cut(s) 99, 219, 465
Kzo9I GATC 2 cut(s) 6, 352
LpnPI CCDG 4 cut(s) 192, 360, 372, 433
Lsp1109I GCAGC 2 cut(s) 28, 304
LweI GCATC 1 cut(s) 3
MaeIII GTNAC 1 cut(s) 399
MalI GATC 2 cut(s) 8, 354
MboI GATC 2 cut(s) 6, 352
MboII GAAGA 3 cut(s) 69, 211, 347
MluCI AATT 5 cut(s) 119, 169, 276, 302, 424
MmeI TCCRAC 1 cut(s) 157
MseI TTAA 2 cut(s) 66, 472
NdeII GATC 2 cut(s) 6, 352
NlaIV GGNNCC 1 cut(s) 47
NmuCI GTSAC 1 cut(s) 399
PflMI CCANNNNNTGG 1 cut(s) 426
PkrI GCNGC 2 cut(s) 18, 319
PspN4I GGNNCC 1 cut(s) 47
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
SaqAI TTAA 2 cut(s) 66, 472
SatI GCNGC 2 cut(s) 17, 318
Sau3AI GATC 2 cut(s) 6, 352
SetI ASST 6 cut(s) 21, 51, 198, 225, 263, 383
SfaNI GCATC 1 cut(s) 3
Sse9I AATT 5 cut(s) 119, 169, 276, 302, 424
SspI AATATT 1 cut(s) 289
TaaI ACNGT 1 cut(s) 34
TaqI TCGA 3 cut(s) 9, 162, 383
TasI AATT 5 cut(s) 119, 169, 276, 302, 424
Tru1I TTAA 2 cut(s) 66, 472
Tru9I TTAA 2 cut(s) 66, 472
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 1 cut(s) 399
TseI GCWGC 2 cut(s) 16, 317
Tsp45I GTSAC 1 cut(s) 399
TspDTI ATGAA 1 cut(s) 321
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 1 cut(s) 223
Van91I CCANNNNNTGG 1 cut(s) 426
XmiI GTMKAC 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.