Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009248.1

Orthogroup ID

OG0002736

Physical Location & Seq

Genomic Coordinates Forward (+)

40715 .. 43908

Gene Structure 3194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009248.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1740 bp

atgtctgcagaggaaaaattaaggtttaagttcaataagaaactcaaaatagcagttggaaattctaagttttcaaatagtgggagaaagaaggctgaagataatgtcaatgagagtgagaatggtaagagagagaactataaatcgagtgtaagagataagaagtttcatactgctgaagaggggagtcggggagtttttgatagaaggaagagagtctatgttgatcgagatgcagcttgggaggctaacagtaatgaggaggcaccttataggaaggttttatctaaaaaaggacagaatcaattgaagtatggttatattaatgagaagaactacagtagatctccttcacgtcctcgttacaagtggggttctaatgagagtgcttctgaaactaaacggttttctcccaaggagagaagtgcaaaagtttataataacttcggcaatgaaaagaataatagtagatttccttcttgtccccgttcgaagtgggattctgatggattagagaatgcttctgaaactaaacgtttttctcccaaggttagaagtgcaaaagtttacaatgaaacaaaagttaaggacgctgatcattttggtaatgaaaagagtggcagcagatttccttcgcgtcctcgctctacatggtgttctgatatcactgcttctgaaactaaacgtttttctcctaaggttagaagtgagaaacgttccaataaaaccaaagttaaggatgttgataagatggaatctattacaactgatggtggacggagtgcttcactgaagaaacataaccaaataaaaccagacttgcaaaaatccccaaatatatctcttccaaatactgtgaagaaaaaagcatgggaaaagaatatctcggatgaaggatcagatgtgctagatggtcagcgaaagaagaagcgaatgcgaccagatccatatgacatttcaaataaacgacttgatgataggtacaacactgagctttctgcaccattggatgatactcctttctctaccagctcagaaagagagcggattgaggaaaatatatttaggagtaaattgacattttttgctgctgcaaaagtttcatcatcatttccacctcctgatcttccggagattgcatttgcaggaaggtcaaatgtggggaaatcatcactacttaatgcacttaccagaaattggggtgttgcacgaacatcagataagcctggtcttactcagagtattaatttcttcaatcttggatcaaagctctgtttggttgatttgcctggatatggctttgcttatgccaaagaagaggttaaggatgcttgggaggagcttgtgaaggagtatgtttccacaagagttggtctaaaacgagtgtgcttacttattgataccaaatggggaatgaagcctagggatcgtgaactcattgacctgatggaaagatctcaaaccaagtatcagatcttattaacgaaatcggatgcggttttcccgattgatgtagcacgccgtgcaatgcaaattgaagagagcctcaaggcaaataagtctctggtccaacctgtgatgatgatgagctcgagaactggagctgtcaggctgcgggatccacttcctgtgcaaatgttttggctcaccattccaagtaagctgaaagcctcaaactcagaaataaaaggcacaacgctgcagatttgtttgcctgcgcgaactgacaaggagttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

579

Amino Acids

66.09

Weight (kDa)

9.85

Isoelectric Point (pI)

51.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58370 AT5G58370 AT5G58370
fragaria_vesca	FvH4_3g40250 FvH4_3g40250
malus_domestica	MD03G1054800.v1.1
prunus_persica	Prupe.6G043400_v2.0.a1
pyrus_communis	pycom03g04350
rosa_chinensis	RchiOBHm_Chr5g0072471 RchiOBHm_Chr5g0072511 RchiOBHm_Chr5g0073721
rosa_laevigata	RLG00000036302 RLG00000036304 RLG00000036308
rosa_multiflora	Rmu_sc0004501.1_g000007 Rmu_sc0004594.1_g000018 Rmu_sc0008676.1_g000008 Rmu_sc0008676.1_g000023 Rmu_sc0009248.1_g000009
rosa_roxburghii	Rroxscaffold_1G00007580 Rroxscaffold_1G00008640 Rroxscaffold_1G00008730
rosa_rugosa	Rorug05G0418400 Rorug05G0430400
rosa_samantha	Rh5AG475000 Rh5AG483100 Rh5BG495000 Rh5BG495400 Rh5BG504100 Rh5CG518900 Rh5CG519200 Rh5CG527600 Rh5DG507100 Rh5DG507400 Rh5DG516200
rosa_wichuraiana	Rw5G044100 Rw5G044130 Rw5G044890 Rw5G044910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	438
AccB1I	GGYRCC	1 cut(s)	265
AccB7I	CCANNNNNTGG	1 cut(s)	1197
AccBSI	CCGCTC	1 cut(s)	1045
AccII	CGCG	2 cut(s)	637, 1720
AccIII	TCCGGA	1 cut(s)	1129
AciI	CCGC	3 cut(s)	1045, 1496, 1615
AclI	AACGTT	3 cut(s)	535, 685, 715
AclWI	GGATC	6 cut(s)	904, 938, 1270, 1434, 1613, 1626
AcsI	RAATTY	1 cut(s)	61
AcuI	CTGAAG	3 cut(s)	117, 198, 812
AdeI	CACNNNGTG	1 cut(s)	1523
AfaI	GTAC	1 cut(s)	983
AfiI	CCNNNNNNNGG	2 cut(s)	1197, 1295
AgsI	TTSAA	6 cut(s)	34, 75, 310, 960, 1255, 1538
AjiI	CACGTC	1 cut(s)	356
AjnI	CCWGG	2 cut(s)	1225, 1288
AluBI	AGCT	8 cut(s)	239, 994, 1032, 1270, 1342, 1590, 1604, 1663
AluI	AGCT	8 cut(s)	239, 994, 1032, 1270, 1342, 1590, 1604, 1663
Alw21I	GWGCWC	1 cut(s)	1592
Alw26I	GTCTC	1 cut(s)	1566
AlwI	GGATC	6 cut(s)	904, 938, 1270, 1434, 1613, 1626
Ama87I	CYCGRG	1 cut(s)	1591
Aor13HI	TCCGGA	1 cut(s)	1129
ApeKI	GCWGC	6 cut(s)	236, 621, 1088, 1091, 1612, 1699
ApoI	RAATTY	1 cut(s)	61
AseI	ATTAAT	2 cut(s)	324, 1245
AspA2I	CCTAGG	1 cut(s)	1421
AspLEI	GCGC	1 cut(s)	1720
AspS9I	GGNCC	1 cut(s)	1567
AsuHPI	GGTGA	1 cut(s)	1639
AsuII	TTCGAA	1 cut(s)	491
AvaI	CYCGRG	1 cut(s)	1591
AvaII	GGWCC	1 cut(s)	1567
AvrII	CCTAGG	1 cut(s)	1421
AxyI	CCTNAGG	1 cut(s)	696
BamHI	GGATCC	1 cut(s)	1618
BanI	GGYRCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	1592
BarI	GAAGNNNNNNTAC	4 cut(s)	334, 366, 460, 492
Bbv12I	GWGCWC	1 cut(s)	1592
BbvI	GCAGC	6 cut(s)	248, 633, 1075, 1078, 1599, 1686
BccI	CCATC	5 cut(s)	500, 745, 764, 905, 1441
BceAI	ACGGC	1 cut(s)	1506
BciT130I	CCWGG	2 cut(s)	1227, 1290
BclI	TGATCA	1 cut(s)	595
BcoDI	GTCTC	1 cut(s)	1566
BfaI	CTAG	3 cut(s)	908, 1422, 1738
BfmI	CTRYAG	3 cut(s)	6, 337, 1700
BglII	AGATCT	3 cut(s)	344, 1454, 1473
BisI	GCNGC	6 cut(s)	237, 622, 1089, 1092, 1613, 1700
BlnI	CCTAGG	1 cut(s)	1421
BlsI	GCNGC	6 cut(s)	238, 623, 1090, 1093, 1614, 1701
Bme1390I	CCNGG	2 cut(s)	1227, 1290
Bme18I	GGWCC	1 cut(s)	1567
BmeT110I	CYCGRG	1 cut(s)	1591
BmgBI	CACGTC	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	1567
BmiI	GGNNCC	2 cut(s)	267, 1620
BmrFI	CCNGG	2 cut(s)	1227, 1290
BmsI	GCATC	3 cut(s)	223, 1318, 1483
BpmI	CTGGAG	1 cut(s)	1620
Bpu14I	TTCGAA	1 cut(s)	491
BpuEI	CTTGAG	1 cut(s)	1532
BsaJI	CCNNGG	3 cut(s)	414, 546, 1421
BsaWI	WCCGGW	1 cut(s)	1129
Bsc4I	CCNNNNNNNGG	2 cut(s)	1197, 1295
Bse1I	ACTGG	1 cut(s)	1603
Bse21I	CCTNAGG	1 cut(s)	696
Bse3DI	GCAATG	2 cut(s)	457, 1533
BseAI	TCCGGA	1 cut(s)	1129
BseBI	CCWGG	2 cut(s)	1227, 1290
BseDI	CCNNGG	3 cut(s)	414, 546, 1421
BseGI	GGATG	5 cut(s)	745, 895, 1015, 1333, 1498
BseLI	CCNNNNNNNGG	2 cut(s)	1197, 1295
BseMI	GCAATG	2 cut(s)	457, 1533
BseMII	CTCAG	4 cut(s)	981, 1047, 1250, 1692
BseNI	ACTGG	1 cut(s)	1603
BseRI	GAGGAG	2 cut(s)	275, 1352
BseXI	GCAGC	6 cut(s)	248, 633, 1075, 1078, 1599, 1686
BsgI	GTGCAG	1 cut(s)	984
Bsh1236I	CGCG	2 cut(s)	637, 1720
BshNI	GGYRCC	1 cut(s)	265
BsiHKAI	GWGCWC	1 cut(s)	1592
BsiHKCI	CYCGRG	1 cut(s)	1591
BsiSI	CCGG	1 cut(s)	1130
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	2 cut(s)	1197, 1295
BsmAI	GTCTC	1 cut(s)	1566
BsmFI	GGGAC	1 cut(s)	468
BsmI	GAATGC	2 cut(s)	523, 939
BsoBI	CYCGRG	1 cut(s)	1591
Bsp119I	TTCGAA	1 cut(s)	491
Bsp1286I	GDGCHC	1 cut(s)	1592
Bsp13I	TCCGGA	1 cut(s)	1129
BspACI	CCGC	3 cut(s)	1045, 1496, 1615
BspCNI	CTCAG	4 cut(s)	982, 1046, 1249, 1691
BspEI	TCCGGA	1 cut(s)	1129
BspFNI	CGCG	2 cut(s)	637, 1720
BspLI	GGNNCC	2 cut(s)	267, 1620
BspMAI	CTGCAG	2 cut(s)	10, 1704
BspPI	GGATC	6 cut(s)	904, 938, 1270, 1434, 1613, 1626
BspT104I	TTCGAA	1 cut(s)	491
BspT107I	GGYRCC	1 cut(s)	265
BsrBI	CCGCTC	1 cut(s)	1045
BsrDI	GCAATG	2 cut(s)	457, 1533
BsrI	ACTGG	1 cut(s)	1603
BssECI	CCNNGG	3 cut(s)	414, 546, 1421
BssT1I	CCWWGG	3 cut(s)	414, 546, 1421
Bst2UI	CCWGG	2 cut(s)	1227, 1290
Bst4CI	ACNGT	4 cut(s)	254, 341, 405, 856
Bst6I	CTCTTC	5 cut(s)	174, 206, 849, 1311, 1533
BstAPI	GCANNNNNTGC	1 cut(s)	1523
BstBI	TTCGAA	1 cut(s)	491
BstC8I	GCNNGC	2 cut(s)	1519, 1716
BstDEI	CTNAG	6 cut(s)	66, 696, 990, 1033, 1236, 1678
BstF5I	GGATG	5 cut(s)	745, 895, 1015, 1333, 1498
BstFNI	CGCG	2 cut(s)	637, 1720
BstHHI	GCGC	1 cut(s)	1720
BstMAI	GTCTC	1 cut(s)	1566
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 1523
BstNI	CCWGG	2 cut(s)	1227, 1290
BstSCI	CCNGG	2 cut(s)	1225, 1288
BstSFI	CTRYAG	3 cut(s)	6, 337, 1700
BstUI	CGCG	2 cut(s)	637, 1720
BstV1I	GCAGC	6 cut(s)	248, 633, 1075, 1078, 1599, 1686
BstX2I	RGATCY	5 cut(s)	344, 943, 1454, 1473, 1618
BstYI	RGATCY	5 cut(s)	344, 943, 1454, 1473, 1618
Bsu36I	CCTNAGG	1 cut(s)	696
BtrI	CACGTC	1 cut(s)	356
BtsCI	GGATG	5 cut(s)	745, 895, 1015, 1333, 1498
BtsI	GCAGTG	1 cut(s)	666
BtsIMutI	CAGTG	3 cut(s)	666, 788, 987
Cac8I	GCNNGC	2 cut(s)	1519, 1716
CfoI	GCGC	1 cut(s)	1720
Cfr13I	GGNCC	1 cut(s)	1567
CseI	GACGC	2 cut(s)	599, 626
Csp6I	GTAC	1 cut(s)	982
CspCI	CAANNNNNGTGG	2 cut(s)	1351, 1386
CviAII	CATG	2 cut(s)	651, 870
CviQI	GTAC	1 cut(s)	982
DdeI	CTNAG	6 cut(s)	66, 696, 990, 1033, 1236, 1678
DraIII	CACNNNGTG	1 cut(s)	1523
Eam1104I	CTCTTC	5 cut(s)	174, 206, 849, 1311, 1533
EarI	CTCTTC	5 cut(s)	174, 206, 849, 1311, 1533
Ecl136II	GAGCTC	1 cut(s)	1590
Eco130I	CCWWGG	3 cut(s)	414, 546, 1421
Eco24I	GRGCYC	1 cut(s)	1592
Eco32I	GATATC	1 cut(s)	664
Eco47I	GGWCC	1 cut(s)	1567
Eco53kI	GAGCTC	1 cut(s)	1590
Eco57I	CTGAAG	3 cut(s)	117, 198, 812
Eco81I	CCTNAGG	1 cut(s)	696
Eco88I	CYCGRG	1 cut(s)	1591
EcoICRI	GAGCTC	1 cut(s)	1590
EcoRII	CCWGG	2 cut(s)	1225, 1288
EcoRV	GATATC	1 cut(s)	664
EcoT14I	CCWWGG	3 cut(s)	414, 546, 1421
EcoT38I	GRGCYC	1 cut(s)	1592
ErhI	CCWWGG	3 cut(s)	414, 546, 1421
FaeI	CATG	2 cut(s)	654, 873
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	2 cut(s)	650, 869
FauI	CCCGC	1 cut(s)	1608
FauNDI	CATATG	1 cut(s)	949
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	6 cut(s)	237, 622, 1089, 1092, 1613, 1700
FokI	GGATG	5 cut(s)	752, 902, 1022, 1340, 1505
FriOI	GRGCYC	1 cut(s)	1592
Fsp4HI	GCNGC	6 cut(s)	237, 622, 1089, 1092, 1613, 1700
FspBI	CTAG	3 cut(s)	908, 1422, 1738
GlaI	GCGC	1 cut(s)	1719
GluI	GCNGC	6 cut(s)	237, 622, 1089, 1092, 1613, 1700
GsuI	CTGGAG	1 cut(s)	1620
HapII	CCGG	1 cut(s)	1130
HgaI	GACGC	2 cut(s)	599, 626
HhaI	GCGC	1 cut(s)	1720
Hin1II	CATG	2 cut(s)	654, 873
Hin6I	GCGC	1 cut(s)	1718
HinP1I	GCGC	1 cut(s)	1718
HinfI	GANTC	5 cut(s)	187, 216, 301, 500, 755
HpaII	CCGG	1 cut(s)	1130
HphI	GGTGA	1 cut(s)	1639
Hpy166II	GTNNAC	3 cut(s)	568, 776, 1433
Hpy188III	TCNNGA	6 cut(s)	230, 1121, 1130, 1430, 1504, 1593
Hpy8I	GTNNAC	3 cut(s)	568, 776, 1433
HpyAV	CCTTC	9 cut(s)	85, 201, 271, 360, 486, 642, 887, 1143, 1342
HpyCH4III	ACNGT	4 cut(s)	254, 341, 405, 856
HpyCH4IV	ACGT	4 cut(s)	355, 535, 685, 715
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 1523
HpyF3I	CTNAG	6 cut(s)	66, 696, 990, 1033, 1236, 1678
HpySE526I	ACGT	4 cut(s)	355, 535, 685, 715
Hsp92II	CATG	2 cut(s)	654, 873
HspAI	GCGC	1 cut(s)	1718
Kpn2I	TCCGGA	1 cut(s)	1129
Ksp22I	TGATCA	1 cut(s)	595
LmnI	GCTCC	2 cut(s)	1339, 1601
Lsp1109I	GCAGC	6 cut(s)	248, 633, 1075, 1078, 1599, 1686
LweI	GCATC	3 cut(s)	223, 1318, 1483
MaeI	CTAG	3 cut(s)	908, 1422, 1738
MaeII	ACGT	4 cut(s)	355, 535, 685, 715
MaeIII	GTNAC	1 cut(s)	362
MbiI	CCGCTC	1 cut(s)	1045
MfeI	CAATTG	1 cut(s)	305
MflI	RGATCY	5 cut(s)	344, 943, 1454, 1473, 1618
MhlI	GDGCHC	1 cut(s)	1592
MluCI	AATT	7 cut(s)	17, 61, 305, 1073, 1195, 1246, 1533
MlyI	GAGTC	2 cut(s)	196, 225
MmeI	TCCRAC	2 cut(s)	37, 1594
MroI	TCCGGA	1 cut(s)	1129
MseI	TTAA	9 cut(s)	20, 27, 324, 585, 735, 1179, 1245, 1323, 1481
MspI	CCGG	1 cut(s)	1130
MspR9I	CCNGG	2 cut(s)	1227, 1290
MunI	CAATTG	1 cut(s)	305
Mva1269I	GAATGC	2 cut(s)	523, 939
MvaI	CCWGG	2 cut(s)	1227, 1290
MvnI	CGCG	2 cut(s)	637, 1720
MwoI	GCNNNNNNNGC	2 cut(s)	245, 1523
NdeI	CATATG	1 cut(s)	949
NlaIII	CATG	2 cut(s)	654, 873
NlaIV	GGNNCC	2 cut(s)	267, 1620
NspV	TTCGAA	1 cut(s)	491
PaeR7I	CTCGAG	1 cut(s)	1591
PctI	GAATGC	2 cut(s)	523, 939
PfeI	GAWTC	3 cut(s)	301, 500, 755
PflMI	CCANNNNNTGG	1 cut(s)	1197
PkrI	GCNGC	6 cut(s)	238, 623, 1090, 1093, 1614, 1701
PleI	GAGTC	2 cut(s)	195, 224
PpsI	GAGTC	2 cut(s)	195, 224
PshBI	ATTAAT	2 cut(s)	324, 1245
PsiI	TTATAA	1 cut(s)	438
Psp124BI	GAGCTC	1 cut(s)	1592
Psp1406I	AACGTT	3 cut(s)	535, 685, 715
Psp6I	CCWGG	2 cut(s)	1225, 1288
PspGI	CCWGG	2 cut(s)	1225, 1288
PspN4I	GGNNCC	2 cut(s)	267, 1620
PspPI	GGNCC	1 cut(s)	1567
PstI	CTGCAG	2 cut(s)	10, 1704
PsuI	RGATCY	5 cut(s)	344, 943, 1454, 1473, 1618
RsaI	GTAC	1 cut(s)	983
RsaNI	GTAC	1 cut(s)	982
SacI	GAGCTC	1 cut(s)	1592
SaqAI	TTAA	9 cut(s)	20, 27, 324, 585, 735, 1179, 1245, 1323, 1481
SatI	GCNGC	6 cut(s)	237, 622, 1089, 1092, 1613, 1700
Sau96I	GGNCC	1 cut(s)	1567
SchI	GAGTC	2 cut(s)	196, 225
ScrFI	CCNGG	2 cut(s)	1227, 1290
SduI	GDGCHC	1 cut(s)	1592
SfaNI	GCATC	3 cut(s)	223, 1318, 1483
SfcI	CTRYAG	3 cut(s)	6, 337, 1700
Sfr274I	CTCGAG	1 cut(s)	1591
SfuI	TTCGAA	1 cut(s)	491
SinI	GGWCC	1 cut(s)	1567
SlaI	CTCGAG	1 cut(s)	1591
SmlI	CTYRAG	2 cut(s)	1547, 1591
SmoI	CTYRAG	2 cut(s)	1547, 1591
Sse9I	AATT	7 cut(s)	17, 61, 305, 1073, 1195, 1246, 1533
SsiI	CCGC	3 cut(s)	1045, 1496, 1615
SspMI	CTAG	3 cut(s)	908, 1422, 1738
SstI	GAGCTC	1 cut(s)	1592
StyD4I	CCNGG	2 cut(s)	1225, 1288
StyI	CCWWGG	3 cut(s)	414, 546, 1421
TaaI	ACNGT	4 cut(s)	254, 341, 405, 856
TaiI	ACGT	4 cut(s)	358, 538, 688, 718
TaqI	TCGA	4 cut(s)	146, 229, 491, 1592
TasI	AATT	7 cut(s)	17, 61, 305, 1073, 1195, 1246, 1533
TfiI	GAWTC	3 cut(s)	301, 500, 755
Tru1I	TTAA	9 cut(s)	20, 27, 324, 585, 735, 1179, 1245, 1323, 1481
Tru9I	TTAA	9 cut(s)	20, 27, 324, 585, 735, 1179, 1245, 1323, 1481
TscAI	CASTG	3 cut(s)	673, 795, 994
TseI	GCWGC	6 cut(s)	236, 621, 1088, 1091, 1612, 1699
TspDTI	ATGAA	7 cut(s)	158, 468, 588, 624, 906, 1092, 1430
TspGWI	ACGGA	1 cut(s)	793
TspRI	CASTG	3 cut(s)	673, 795, 994
Van91I	CCANNNNNTGG	1 cut(s)	1197
VpaK11BI	GGWCC	1 cut(s)	1567
VspI	ATTAAT	2 cut(s)	324, 1245
XapI	RAATTY	1 cut(s)	61
XhoI	CTCGAG	1 cut(s)	1591
XmaJI	CCTAGG	1 cut(s)	1421
XspI	CTAG	3 cut(s)	908, 1422, 1738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.