Rw5G044100

Ferrous iron transport protein B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002736
Physical Location & Seq
Reverse (-)
77465336 .. 77469921
4586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G044100.1

Sequence Viewer

Length: 1818 bp
ATGTCTGCAGAGGAAAAATTAAGGTTTAAGTTCAATAAGAAACTCAAAATAGCAGTTGGAAATTCTAAGTTTTCAAGTAGTGGGAGAAAAAAGGCTGAAGATAATGTCAATGAGAGTGAGAATGGTAAGAGAGAGAACTATAAATCGAGTGTAAGAGATAAGAAGTTTCATACTTCTGAAGAAGGGAGTCGGGGAGTTTTTGATAGAAGGAAGAGAATCTATGTTGATCGAGATGCAGCTTGGGAGGCTAACAGTAATGAGGAGGCACCTTATAGGAAGGTTTTATCTAAAAAAGGACAGAATCAATTGAAGTATGGTTATATTAATGAGAAGAACTACAGTAGATCTCCTTCACGTCCTCGTTACAGGTGGGGTTCTAATGAGAGTGCTTCTGAAACTAAACGGTTTTCTCCCAAGGAGAGAAGTGCAAAAGTTTATAATAACTTTGGCAATGAAAAGAATAATAGTAGATTTCCTTCTCGCCCCCGTTCTAAGTGGGATTCTGATGGATTAGAGAATGCTTCTGAAACTAAACGTTTTTCTCCCAAGGTTAGAAGTGCAAAAGTTTACAATGAAACAAAAGTTAAGGACGCTGATAATTTTGGTAATGAAAAGAGTAGCAGCAGATTTCCTTCGCGTCCTCGCTCTACATGGGGTTCTGATATCACTGCTTCTGAAACTAAACGTTTTTCTCCTAAGGTTAGAAGTGAGAAACGTTCCAATAAAACCAAAGTTAAGGATGTTGATGAGATGGAATCCAATACAACTGATGGTGGTCGGAGTGCTTCACTGAAGAAACATAACCAAATAAAACCAGACTTGCAAAAATCCCCAAATATATCTCTTCCAAATACTGTGAAGAAAAAAGCACGGGAAAAGAATATTTCGGATGAAGGATCAGATGTGCTAGATGGTCAGCGAAAGAAGAAGAAGCAAATGCGACTAGATCCATATGACATTTCAAATAAACGACTTGATGATAGTATTGCTACAAATGAAAACTTAAAGGAGAAGGAAAAAGATGTTGAGGAAAAAGCTGAGATATCAAAGAATGCACAATTTCGTGCAATCCAACCAAGTCCATCAATCCTTTCCTATGTCGAAGATAATTTGTTGGGTCGTAGACGCTTGATTGAGCTGAGGAGGGCAGGCTACAACACTGAGCTTTCTGCACCATTGGATAATACTCCTTTCTCTACCAGCTCAGAAAGAGAGCGGATTGAGGAAAATATATTTAGGAGTAAATTGACATTTTTTGCTGCTGCAAAAGTTTCATCATCATTTCCACCTCCTGATCTTCCGGAGATTGCATTTGCAGGAAGGTCAAATGTTGGGAAATCATCACTACTTAATGCACTTACCAGAAATTGGGGTGTTGCACGAACATCAGATAAGCCTGGTCTTACTCAGAGTATTAATTTCTTCAATCTTGGATCAAAGCTCTGTTTGGTTGATTTGCCTGGATATGGCTTTGCTTATGCTAAAGAAGAGGTTAAGGATGCTTGGGAGGAGCTTGTGAAGGAGTATGTTTCCTCAAGAGTTGGTCTAAAACAAGTGTGCTTACTTATTGATACCAAATGGGGAATGAAGCCTAGGGATCGTGAACTCATTGACCTGATGGAAAGATCTCAAACCAAGTATCAGATCTTATTAACTAAATCAGATGCGGTTTTCCCGATTGATGTAGCACGCCGTGCAATGCAAATTGAAGAGAGCCTCAAGGCAAATGAGTCTGTGGTCCAACCTGTGTGGGTTGATTTAGTTGATAGGAGAGTGCTTGTGGTTAAGTCCCTATTCAAGTTCGATCCATGTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

605

Amino Acids

69.16

Weight (kDa)

9.74

Isoelectric Point (pI)

54.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 435 - 553 1.7e-19 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 438
AccB1I GGYRCC 1 cut(s) 265
AccB7I CCANNNNNTGG 1 cut(s) 1368
AccBSI CCGCTC 1 cut(s) 1216
AccI GTMKAC 1 cut(s) 1123
AccII CGCG 1 cut(s) 637
AccIII TCCGGA 1 cut(s) 1300
AciI CCGC 2 cut(s) 1216, 1667
AclI AACGTT 3 cut(s) 535, 685, 715
AclWI GGATC 5 cut(s) 904, 941, 1441, 1605, 1799
AcsI RAATTY 1 cut(s) 61
AcuI CTGAAG 3 cut(s) 117, 198, 812
AdeI CACNNNGTG 1 cut(s) 1694
AfiI CCNNNNNNNGG 2 cut(s) 1368, 1466
AgsI TTSAA 7 cut(s) 34, 75, 310, 963, 1426, 1709, 1798
AjiI CACGTC 1 cut(s) 356
AjnI CCWGG 2 cut(s) 1396, 1459
AluBI AGCT 7 cut(s) 239, 1037, 1138, 1165, 1203, 1441, 1513
AluI AGCT 7 cut(s) 239, 1037, 1138, 1165, 1203, 1441, 1513
AlwI GGATC 5 cut(s) 904, 941, 1441, 1605, 1799
Aor13HI TCCGGA 1 cut(s) 1300
ApeKI GCWGC 4 cut(s) 236, 621, 1259, 1262
ApoI RAATTY 1 cut(s) 61
AseI ATTAAT 2 cut(s) 324, 1416
AspA2I CCTAGG 1 cut(s) 1592
AspS9I GGNCC 1 cut(s) 1738
AvaII GGWCC 1 cut(s) 1738
AvrII CCTAGG 1 cut(s) 1592
AxyI CCTNAGG 1 cut(s) 696
BanI GGYRCC 1 cut(s) 265
BarI GAAGNNNNNNTAC 4 cut(s) 334, 366, 460, 492
BbvCI CCTCAGC 1 cut(s) 1139
BbvI GCAGC 4 cut(s) 248, 633, 1246, 1249
BccI CCATC 6 cut(s) 500, 745, 764, 905, 1090, 1612
BceAI ACGGC 1 cut(s) 1677
BciT130I CCWGG 2 cut(s) 1398, 1461
BfaI CTAG 3 cut(s) 908, 944, 1593
BfmI CTRYAG 2 cut(s) 6, 337
BglII AGATCT 3 cut(s) 344, 1625, 1644
BisI GCNGC 4 cut(s) 237, 622, 1260, 1263
BlnI CCTAGG 1 cut(s) 1592
BlsI GCNGC 4 cut(s) 238, 623, 1261, 1264
Bme1390I CCNGG 2 cut(s) 1398, 1461
Bme18I GGWCC 1 cut(s) 1738
BmgBI CACGTC 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 1738
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 2 cut(s) 1398, 1461
BmsI GCATC 3 cut(s) 223, 1489, 1654
Bpu10I CCTNAGC 1 cut(s) 1139
BpuEI CTTGAG 2 cut(s) 1519, 1703
BsaJI CCNNGG 3 cut(s) 414, 546, 1592
BsaWI WCCGGW 1 cut(s) 1300
Bsc4I CCNNNNNNNGG 2 cut(s) 1368, 1466
Bse21I CCTNAGG 1 cut(s) 696
Bse3DI GCAATG 2 cut(s) 457, 1704
BseAI TCCGGA 1 cut(s) 1300
BseBI CCWGG 2 cut(s) 1398, 1461
BseDI CCNNGG 3 cut(s) 414, 546, 1592
BseGI GGATG 3 cut(s) 745, 895, 1504
BseLI CCNNNNNNNGG 2 cut(s) 1368, 1466
BseMI GCAATG 2 cut(s) 457, 1704
BseMII CTCAG 5 cut(s) 1029, 1130, 1152, 1218, 1421
BseRI GAGGAG 3 cut(s) 275, 1156, 1523
BseXI GCAGC 4 cut(s) 248, 633, 1246, 1249
BsgI GTGCAG 1 cut(s) 1155
Bsh1236I CGCG 1 cut(s) 637
BshNI GGYRCC 1 cut(s) 265
BsiSI CCGG 1 cut(s) 1301
BslFI GGGAC 1 cut(s) 1774
BslI CCNNNNNNNGG 2 cut(s) 1368, 1466
BsmFI GGGAC 1 cut(s) 1774
BsmI GAATGC 2 cut(s) 523, 1057
Bsp13I TCCGGA 1 cut(s) 1300
BspACI CCGC 2 cut(s) 1216, 1667
BspCNI CTCAG 5 cut(s) 1030, 1131, 1153, 1217, 1420
BspEI TCCGGA 1 cut(s) 1300
BspFNI CGCG 1 cut(s) 637
BspLI GGNNCC 1 cut(s) 267
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 5 cut(s) 904, 941, 1441, 1605, 1799
BspT107I GGYRCC 1 cut(s) 265
BsrBI CCGCTC 1 cut(s) 1216
BsrDI GCAATG 2 cut(s) 457, 1704
BssECI CCNNGG 3 cut(s) 414, 546, 1592
BssT1I CCWWGG 3 cut(s) 414, 546, 1592
Bst2UI CCWGG 2 cut(s) 1398, 1461
Bst4CI ACNGT 4 cut(s) 254, 341, 405, 856
Bst6I CTCTTC 4 cut(s) 206, 849, 1482, 1704
BstAPI GCANNNNNTGC 1 cut(s) 1694
BstC8I GCNNGC 2 cut(s) 1150, 1690
BstDEI CTNAG 8 cut(s) 66, 492, 696, 1038, 1139, 1161, 1204, 1407
BstF5I GGATG 3 cut(s) 745, 895, 1504
BstFNI CGCG 1 cut(s) 637
BstMWI GCNNNNNNNGC 2 cut(s) 245, 1694
BstNI CCWGG 2 cut(s) 1398, 1461
BstSCI CCNGG 2 cut(s) 1396, 1459
BstSFI CTRYAG 2 cut(s) 6, 337
BstUI CGCG 1 cut(s) 637
BstV1I GCAGC 4 cut(s) 248, 633, 1246, 1249
BstX2I RGATCY 4 cut(s) 344, 946, 1625, 1644
BstYI RGATCY 4 cut(s) 344, 946, 1625, 1644
Bsu36I CCTNAGG 1 cut(s) 696
BtrI CACGTC 1 cut(s) 356
BtsCI GGATG 3 cut(s) 745, 895, 1504
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 3 cut(s) 666, 788, 1158
Cac8I GCNNGC 2 cut(s) 1150, 1690
Cfr13I GGNCC 1 cut(s) 1738
CseI GACGC 3 cut(s) 599, 626, 1134
CspCI CAANNNNNGTGG 2 cut(s) 1730, 1765
CviAII CATG 2 cut(s) 651, 1809
DdeI CTNAG 8 cut(s) 66, 492, 696, 1038, 1139, 1161, 1204, 1407
DraIII CACNNNGTG 1 cut(s) 1694
Eam1104I CTCTTC 4 cut(s) 206, 849, 1482, 1704
EarI CTCTTC 4 cut(s) 206, 849, 1482, 1704
Eco130I CCWWGG 3 cut(s) 414, 546, 1592
Eco32I GATATC 2 cut(s) 664, 1044
Eco47I GGWCC 1 cut(s) 1738
Eco57I CTGAAG 3 cut(s) 117, 198, 812
Eco81I CCTNAGG 1 cut(s) 696
EcoRII CCWGG 2 cut(s) 1396, 1459
EcoRV GATATC 2 cut(s) 664, 1044
EcoT14I CCWWGG 3 cut(s) 414, 546, 1592
ErhI CCWWGG 3 cut(s) 414, 546, 1592
FaeI CATG 2 cut(s) 654, 1812
FaqI GGGAC 1 cut(s) 1774
FatI CATG 2 cut(s) 650, 1808
FauNDI CATATG 1 cut(s) 952
FblI GTMKAC 1 cut(s) 1123
Fnu4HI GCNGC 4 cut(s) 237, 622, 1260, 1263
FokI GGATG 3 cut(s) 752, 902, 1511
Fsp4HI GCNGC 4 cut(s) 237, 622, 1260, 1263
FspBI CTAG 3 cut(s) 908, 944, 1593
GluI GCNGC 4 cut(s) 237, 622, 1260, 1263
HapII CCGG 1 cut(s) 1301
HgaI GACGC 3 cut(s) 599, 626, 1134
Hin1II CATG 2 cut(s) 654, 1812
HinfI GANTC 6 cut(s) 187, 216, 301, 500, 755, 1730
HpaII CCGG 1 cut(s) 1301
Hpy166II GTNNAC 3 cut(s) 568, 1124, 1604
Hpy188III TCNNGA 6 cut(s) 230, 1292, 1301, 1536, 1601, 1675
Hpy8I GTNNAC 3 cut(s) 568, 1124, 1604
HpyCH4III ACNGT 4 cut(s) 254, 341, 405, 856
HpyCH4IV ACGT 4 cut(s) 355, 535, 685, 715
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 1694
HpyF3I CTNAG 8 cut(s) 66, 492, 696, 1038, 1139, 1161, 1204, 1407
HpySE526I ACGT 4 cut(s) 355, 535, 685, 715
Hsp92II CATG 2 cut(s) 654, 1812
Kpn2I TCCGGA 1 cut(s) 1300
LmnI GCTCC 1 cut(s) 1510
Lsp1109I GCAGC 4 cut(s) 248, 633, 1246, 1249
LweI GCATC 3 cut(s) 223, 1489, 1654
MaeI CTAG 3 cut(s) 908, 944, 1593
MaeII ACGT 4 cut(s) 355, 535, 685, 715
MaeIII GTNAC 1 cut(s) 362
MbiI CCGCTC 1 cut(s) 1216
MfeI CAATTG 1 cut(s) 305
MflI RGATCY 4 cut(s) 344, 946, 1625, 1644
MlyI GAGTC 2 cut(s) 196, 1739
MmeI TCCRAC 4 cut(s) 37, 758, 1096, 1765
MroI TCCGGA 1 cut(s) 1300
MspI CCGG 1 cut(s) 1301
MspR9I CCNGG 2 cut(s) 1398, 1461
MunI CAATTG 1 cut(s) 305
Mva1269I GAATGC 2 cut(s) 523, 1057
MvaI CCWGG 2 cut(s) 1398, 1461
MvnI CGCG 1 cut(s) 637
MwoI GCNNNNNNNGC 2 cut(s) 245, 1694
NdeI CATATG 1 cut(s) 952
NlaIII CATG 2 cut(s) 654, 1812
NlaIV GGNNCC 1 cut(s) 267
PctI GAATGC 2 cut(s) 523, 1057
PfeI GAWTC 4 cut(s) 216, 301, 500, 755
PflMI CCANNNNNTGG 1 cut(s) 1368
PkrI GCNGC 4 cut(s) 238, 623, 1261, 1264
PleI GAGTC 2 cut(s) 195, 1738
PpsI GAGTC 2 cut(s) 195, 1738
PshBI ATTAAT 2 cut(s) 324, 1416
PsiI TTATAA 1 cut(s) 438
Psp1406I AACGTT 3 cut(s) 535, 685, 715
Psp6I CCWGG 2 cut(s) 1396, 1459
PspGI CCWGG 2 cut(s) 1396, 1459
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 1738
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 4 cut(s) 344, 946, 1625, 1644
SatI GCNGC 4 cut(s) 237, 622, 1260, 1263
Sau96I GGNCC 1 cut(s) 1738
SchI GAGTC 2 cut(s) 196, 1739
ScrFI CCNGG 2 cut(s) 1398, 1461
SfaNI GCATC 3 cut(s) 223, 1489, 1654
SfcI CTRYAG 2 cut(s) 6, 337
SinI GGWCC 1 cut(s) 1738
SmlI CTYRAG 2 cut(s) 1534, 1718
SmoI CTYRAG 2 cut(s) 1534, 1718
SsiI CCGC 2 cut(s) 1216, 1667
SspI AATATT 1 cut(s) 883
SspMI CTAG 3 cut(s) 908, 944, 1593
StyD4I CCNGG 2 cut(s) 1396, 1459
StyI CCWWGG 3 cut(s) 414, 546, 1592
TaaI ACNGT 4 cut(s) 254, 341, 405, 856
TaiI ACGT 4 cut(s) 358, 538, 688, 718
TaqI TCGA 4 cut(s) 146, 229, 1101, 1803
TfiI GAWTC 4 cut(s) 216, 301, 500, 755
TscAI CASTG 3 cut(s) 673, 795, 1165
TseI GCWGC 4 cut(s) 236, 621, 1259, 1262
TspDTI ATGAA 8 cut(s) 158, 468, 588, 624, 906, 1011, 1263, 1601
TspRI CASTG 3 cut(s) 673, 795, 1165
Van91I CCANNNNNTGG 1 cut(s) 1368
VpaK11BI GGWCC 1 cut(s) 1738
VspI ATTAAT 2 cut(s) 324, 1416
XapI RAATTY 1 cut(s) 61
XmaJI CCTAGG 1 cut(s) 1592
XmiI GTMKAC 1 cut(s) 1123
XspI CTAG 3 cut(s) 908, 944, 1593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.