Rorug05G0430400

Ferrous iron transport protein B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002736
Physical Location & Seq
Forward (+)
59829677 .. 59830317
641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0430400.1

Sequence Viewer

Length: 225 bp
ATGGCAGCAAAAAGAATTAACTCATTAATCTTACTCTTCTTGTTTCTATTGGCTGTAATTGTCAGCGCTGAACCTGGTCCAGTAGAAGATGCGTACTGGAAAAAACGTGAAGCCGATGCTCAGAATGTAGCCGAGCAATCTGTTGAACCACATCCGGAGCAAGTGACCGAGGAATTGAATACTAATGTTGGCCAGCTTGTATCAGAGCAAGACAAGCATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

74

Amino Acids

8.29

Weight (kDa)

4.82

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pec_lyase_N PF04431 30 - 69 1.8e-09 Pectate lyase, N terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 154
AcoI YGGCCR 1 cut(s) 190
AfaI GTAC 1 cut(s) 95
AfeI AGCGCT 1 cut(s) 67
AgsI TTSAA 2 cut(s) 146, 178
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
Aor13HI TCCGGA 1 cut(s) 154
Aor51HI AGCGCT 1 cut(s) 67
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 1 cut(s) 5
AseI ATTAAT 1 cut(s) 26
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 77
AvaII GGWCC 1 cut(s) 77
BalI TGGCCA 1 cut(s) 192
BbvI GCAGC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 75
BfoI RGCGCY 1 cut(s) 69
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 75
BmsI GCATC 2 cut(s) 79, 106
BsaJI CCNNGG 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 154
Bse1I ACTGG 2 cut(s) 80, 101
BseAI TCCGGA 1 cut(s) 154
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 2 cut(s) 80, 101
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 192
BsiSI CCGG 1 cut(s) 155
BsnI GGCC 1 cut(s) 192
Bsp13I TCCGGA 1 cut(s) 154
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 1 cut(s) 133
BspEI TCCGGA 1 cut(s) 154
BsrI ACTGG 2 cut(s) 80, 101
BssECI CCNNGG 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 75
Bst6I CTCTTC 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 151
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 73
BstV1I GCAGC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 192
BtsCI GGATG 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 194
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 77
CsiI ACCWGGT 1 cut(s) 73
Csp6I GTAC 1 cut(s) 94
CviJI RGCY 5 cut(s) 53, 113, 131, 192, 196
CviKI_1 RGCY 5 cut(s) 53, 113, 131, 192, 196
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 1 cut(s) 120
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 77
Eco47III AGCGCT 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 6
GlaI GCGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 1 cut(s) 192
HapII CCGG 1 cut(s) 155
HhaI GCGC 1 cut(s) 68
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HpaII CCGG 1 cut(s) 155
Hpy188I TCNGA 2 cut(s) 123, 205
Hpy188III TCNNGA 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 1 cut(s) 120
HpySE526I ACGT 1 cut(s) 106
HspAI GCGC 1 cut(s) 66
Kpn2I TCCGGA 1 cut(s) 154
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 6 cut(s) 60, 82, 87, 93, 168, 206
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 2 cut(s) 79, 106
MabI ACCWGGT 1 cut(s) 73
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 163
MboII GAAGA 2 cut(s) 28, 98
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 3 cut(s) 15, 57, 173
MluNI TGGCCA 1 cut(s) 192
MnlI CCTC 1 cut(s) 163
Mox20I TGGCCA 1 cut(s) 192
MroI TCCGGA 1 cut(s) 154
MscI TGGCCA 1 cut(s) 192
MseI TTAA 2 cut(s) 18, 26
Msp20I TGGCCA 1 cut(s) 192
MspI CCGG 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 75
MvaI CCWGG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 214
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 163
PkrI GCNGC 1 cut(s) 7
PshBI ATTAAT 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PspPI GGNCC 1 cut(s) 77
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SaqAI TTAA 2 cut(s) 18, 26
SatI GCNGC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 75
SetI ASST 3 cut(s) 76, 109, 198
SexAI ACCWGGT 1 cut(s) 73
SfaNI GCATC 2 cut(s) 79, 106
SinI GGWCC 1 cut(s) 77
Sse9I AATT 3 cut(s) 15, 57, 173
StyD4I CCNGG 1 cut(s) 73
TaiI ACGT 1 cut(s) 109
TaqII GACCGA 1 cut(s) 182
TasI AATT 3 cut(s) 15, 57, 173
Tru1I TTAA 2 cut(s) 18, 26
Tru9I TTAA 2 cut(s) 18, 26
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 77
VspI ATTAAT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.