Rroxscaffold_1G00008730

Ferrous iron transport protein B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002736
Physical Location & Seq
Forward (+)
10978559 .. 10982426
3868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00008730.1

Sequence Viewer

Length: 1752 bp
ATGTCTGCAGAGGAAAAATTAAGGTTTAAGTTCAATAAGAAACTCAAAATAGCAGTTGGAAATTCTAAGTTTTCAAATAGTGGGAGAAAGAAGGCTGAAGATAATGTCAATGAGAGTGAGAATGGTAAGAGAGAGAACTATAAATCGAGTGTGAGAGATAAGAAGTTTCATGCTGCTGAAGAAGGGAGTCGGGGAGTTTTTGATAGAAGAAAGAGAATCTATGTTGATCGAGATGCAGCTTGGGAGGCTAACAGTAATGAAGAGGCACCTTATAGGAAGGTTCTATCTAAAAAAGGACAGAATCAATTGAAGTATGGTTATATTAATGAGAAGAACTACAGTAGATCTCCTTCACGTCCTCGTTACAAGTGGGGTTCTAATGAGAGTGCTTCTGAGACTAAACGGTTTTCTCCCAAGGAGAGAAGTGCAAAAGTTTATAACAACTTCGGCAATGAAAAGAATAATAGTAGATTTCCTTCTCGTCCCCATTCTAAGTGGGATTCTGATGGATTGGAGAATGCTTCTGAAACTAAACATTTTTCTCCCAAGGTTAGAAGTGCAAAAGTTTACAATGAAACAAAAGTTAAGGACGCTGATAATTTTGGTAATGAAAAGAGTGGCAGCAGATTTCCTTCGCGTCCTCGCTCTACATGGGGTTCTGATATCACTGCTTCTGAAACTAAACGTTTTTCTCCTAAGGTTCGAAGTGAGAAACGTTCCAATAAAACCAAAGTTAAGGATGTTGATGAGATGGAATCCATTACAACTGATGGTGGTCGGAAAAAAGCACGGGAAAAGAATATCTCGGATGAAGGATCAGATGTGCTAGATGGTCAGCGAAAGAAGAAGAAGCGAATGCGACTAGATCCATATGACATTTCAAATAAACGACTTGATGATGGTATTGCTACAAATGAAAACGTAAAGGAGAAGGAAAAAGATGTTGAGGAAAAAGCTGAGATATCAAAGAATGCACAATTTCGTGCAATCCAACCAAGTCCATCAATCCTTTCCTATGTCGAAGATAATTTGTTGGGTCGTAGACGCTTGATTGAGCTGAGGAGGGCAGGCTACAACACTCAGCTTTCGGCACCATTGGATAATACTCCTTTCTATACCAGCTCAGAAAGAGAGCGGATTGAGGAAAATATATTTAGGAGTAAATTGACATTTTTTGCTGCTGCAAAAGTTTCATCATCATTTCCACCTCCTGATCTTCCGGAGATTGCATTTGCAGGAAGGTCAAATGTTGGGAAATCATCACTACTTAATGCACTTACCAGAAATTGGGGTGTTGCACGAACATCAGACAAGCCCGGTCTTACTCAGAGTATTAATTTCTTCAATCTTGGATCAAAGCTCTGTTTGGTTGATTTGCCTGGATATGGCTTTGCTTATGCGAAAGAAGAGGTTAAGGATGCTTGGGAGGAGCTTGTGAAGGAGTATGTTTCCACAAGAGTTGGTCTAAAACGAGTGTGCTTACTTATTGATACCAAATGGGGAATGAAGCCTAGGGATCGTGAGCTCATTGACCTGATGGAAAGATCTCAAACCAGGTATCAGATTTTATTAACGAAATCGGATGCGGTTTTCCCGATTGATGTAGCACGCCGTGCAATGCAATTTGAAGAGAGCCTCAAGGCAAATAAGTCTGTGGTCCAACCTGTGATAATGATGAGCTCGAGAACTGGAGCTGGTATACGAAGTTTACGAACAGTGCTGGCAAAAATTGCTCGAGTTGCCAAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

583

Amino Acids

66.49

Weight (kDa)

9.89

Isoelectric Point (pI)

50.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 408 - 526 2.1e-19 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 438
AccB1I GGYRCC 2 cut(s) 265, 1090
AccB7I CCANNNNNTGG 1 cut(s) 1287
AccBSI CCGCTC 1 cut(s) 1135
AccI GTMKAC 2 cut(s) 1042, 1699
AccII CGCG 1 cut(s) 637
AccIII TCCGGA 1 cut(s) 1219
AciI CCGC 2 cut(s) 1135, 1586
AclI AACGTT 2 cut(s) 685, 715
AclWI GGATC 4 cut(s) 823, 860, 1360, 1524
AcsI RAATTY 1 cut(s) 61
AcuI CTGAAG 2 cut(s) 117, 198
AdeI CACNNNGTG 1 cut(s) 1613
AfiI CCNNNNNNNGG 2 cut(s) 1287, 1385
AgsI TTSAA 6 cut(s) 34, 75, 310, 882, 1345, 1628
AjiI CACGTC 1 cut(s) 356
AjnI CCWGG 2 cut(s) 1378, 1553
Alw21I GWGCWC 2 cut(s) 1527, 1682
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 4 cut(s) 823, 860, 1360, 1524
Ama87I CYCGRG 2 cut(s) 1681, 1734
Aor13HI TCCGGA 1 cut(s) 1219
ApeKI GCWGC 5 cut(s) 173, 236, 621, 1178, 1181
ApoI RAATTY 1 cut(s) 61
AseI ATTAAT 2 cut(s) 324, 1335
AspA2I CCTAGG 1 cut(s) 1511
AspS9I GGNCC 1 cut(s) 1657
AsuC2I CCSGG 1 cut(s) 1317
AsuII TTCGAA 1 cut(s) 703
AvaI CYCGRG 2 cut(s) 1681, 1734
AvaII GGWCC 1 cut(s) 1657
AvrII CCTAGG 1 cut(s) 1511
AxyI CCTNAGG 1 cut(s) 696
BanI GGYRCC 2 cut(s) 265, 1090
BanII GRGCYC 2 cut(s) 1527, 1682
BarI GAAGNNNNNNTAC 4 cut(s) 334, 366, 460, 492
Bbv12I GWGCWC 2 cut(s) 1527, 1682
BbvCI CCTCAGC 1 cut(s) 1058
BbvI GCAGC 5 cut(s) 160, 248, 633, 1165, 1168
BccI CCATC 7 cut(s) 500, 745, 764, 824, 893, 1009, 1531
BceAI ACGGC 1 cut(s) 1596
BciT130I CCWGG 2 cut(s) 1380, 1555
BcnI CCSGG 1 cut(s) 1317
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 3 cut(s) 827, 863, 1512
BfmI CTRYAG 2 cut(s) 6, 337
BglII AGATCT 2 cut(s) 344, 1544
BisI GCNGC 5 cut(s) 174, 237, 622, 1179, 1182
BlnI CCTAGG 1 cut(s) 1511
BlsI GCNGC 5 cut(s) 175, 238, 623, 1180, 1183
Bme1390I CCNGG 3 cut(s) 1317, 1380, 1555
Bme18I GGWCC 1 cut(s) 1657
BmeT110I CYCGRG 2 cut(s) 1681, 1734
BmgBI CACGTC 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 1657
BmiI GGNNCC 2 cut(s) 267, 1092
BmrFI CCNGG 3 cut(s) 1317, 1380, 1555
BmsI GCATC 3 cut(s) 223, 1408, 1573
BpmI CTGGAG 1 cut(s) 1710
Bpu10I CCTNAGC 1 cut(s) 1058
Bpu14I TTCGAA 1 cut(s) 703
BpuEI CTTGAG 1 cut(s) 1622
BpuMI CCSGG 1 cut(s) 1317
BsaJI CCNNGG 3 cut(s) 414, 546, 1511
BsaWI WCCGGW 1 cut(s) 1219
Bsc4I CCNNNNNNNGG 2 cut(s) 1287, 1385
Bse1I ACTGG 1 cut(s) 1693
Bse21I CCTNAGG 1 cut(s) 696
Bse3DI GCAATG 2 cut(s) 457, 1623
BseAI TCCGGA 1 cut(s) 1219
BseBI CCWGG 2 cut(s) 1380, 1555
BseDI CCNNGG 3 cut(s) 414, 546, 1511
BseGI GGATG 4 cut(s) 745, 814, 1423, 1588
BseLI CCNNNNNNNGG 2 cut(s) 1287, 1385
BseMI GCAATG 2 cut(s) 457, 1623
BseMII CTCAG 6 cut(s) 384, 948, 1049, 1094, 1137, 1340
BseNI ACTGG 1 cut(s) 1693
BseRI GAGGAG 2 cut(s) 1075, 1442
BseXI GCAGC 5 cut(s) 160, 248, 633, 1165, 1168
Bsh1236I CGCG 1 cut(s) 637
BshNI GGYRCC 2 cut(s) 265, 1090
BsiHKAI GWGCWC 2 cut(s) 1527, 1682
BsiHKCI CYCGRG 2 cut(s) 1681, 1734
BsiSI CCGG 2 cut(s) 1220, 1317
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 2 cut(s) 1287, 1385
BsmAI GTCTC 1 cut(s) 389
BsmFI GGGAC 1 cut(s) 468
BsmI GAATGC 3 cut(s) 523, 861, 976
BsoBI CYCGRG 2 cut(s) 1681, 1734
Bsp119I TTCGAA 1 cut(s) 703
Bsp1286I GDGCHC 2 cut(s) 1527, 1682
Bsp13I TCCGGA 1 cut(s) 1219
Bsp143I GATC 8 cut(s) 226, 344, 815, 865, 1213, 1352, 1516, 1544
BspACI CCGC 2 cut(s) 1135, 1586
BspCNI CTCAG 6 cut(s) 385, 949, 1050, 1093, 1136, 1339
BspEI TCCGGA 1 cut(s) 1219
BspFNI CGCG 1 cut(s) 637
BspLI GGNNCC 2 cut(s) 267, 1092
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 4 cut(s) 823, 860, 1360, 1524
BspT104I TTCGAA 1 cut(s) 703
BspT107I GGYRCC 2 cut(s) 265, 1090
BsrBI CCGCTC 1 cut(s) 1135
BsrDI GCAATG 2 cut(s) 457, 1623
BsrI ACTGG 1 cut(s) 1693
BssECI CCNNGG 3 cut(s) 414, 546, 1511
BssMI GATC 8 cut(s) 226, 344, 815, 865, 1213, 1352, 1516, 1544
BssNAI GTATAC 1 cut(s) 1700
BssT1I CCWWGG 3 cut(s) 414, 546, 1511
Bst1107I GTATAC 1 cut(s) 1700
Bst2UI CCWGG 2 cut(s) 1380, 1555
Bst4CI ACNGT 4 cut(s) 254, 341, 405, 1717
Bst6I CTCTTC 3 cut(s) 255, 1401, 1623
BstAPI GCANNNNNTGC 2 cut(s) 1613, 1730
BstBI TTCGAA 1 cut(s) 703
BstC8I GCNNGC 3 cut(s) 1069, 1609, 1722
BstDEI CTNAG 9 cut(s) 66, 393, 492, 696, 957, 1058, 1080, 1123, 1326
BstF5I GGATG 4 cut(s) 745, 814, 1423, 1588
BstFNI CGCG 1 cut(s) 637
BstKTI GATC 8 cut(s) 229, 347, 818, 868, 1216, 1355, 1519, 1547
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 8 cut(s) 226, 344, 815, 865, 1213, 1352, 1516, 1544
BstMWI GCNNNNNNNGC 4 cut(s) 245, 1613, 1730, 1739
BstNI CCWGG 2 cut(s) 1380, 1555
BstSCI CCNGG 3 cut(s) 1315, 1378, 1553
BstSFI CTRYAG 2 cut(s) 6, 337
BstUI CGCG 1 cut(s) 637
BstV1I GCAGC 5 cut(s) 160, 248, 633, 1165, 1168
BstX2I RGATCY 3 cut(s) 344, 865, 1544
BstYI RGATCY 3 cut(s) 344, 865, 1544
BstZ17I GTATAC 1 cut(s) 1700
Bsu36I CCTNAGG 1 cut(s) 696
BtrI CACGTC 1 cut(s) 356
BtsCI GGATG 4 cut(s) 745, 814, 1423, 1588
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 2 cut(s) 666, 1722
Cac8I GCNNGC 3 cut(s) 1069, 1609, 1722
Cfr13I GGNCC 1 cut(s) 1657
CseI GACGC 3 cut(s) 599, 626, 1053
CsiI ACCWGGT 1 cut(s) 1553
CspCI CAANNNNNGTGG 2 cut(s) 1441, 1476
CviAII CATG 2 cut(s) 170, 651
DdeI CTNAG 9 cut(s) 66, 393, 492, 696, 957, 1058, 1080, 1123, 1326
DpnI GATC 8 cut(s) 228, 346, 817, 867, 1215, 1354, 1518, 1546
DpnII GATC 8 cut(s) 226, 344, 815, 865, 1213, 1352, 1516, 1544
DraIII CACNNNGTG 1 cut(s) 1613
Eam1104I CTCTTC 3 cut(s) 255, 1401, 1623
EarI CTCTTC 3 cut(s) 255, 1401, 1623
Ecl136II GAGCTC 2 cut(s) 1525, 1680
Eco130I CCWWGG 3 cut(s) 414, 546, 1511
Eco24I GRGCYC 2 cut(s) 1527, 1682
Eco32I GATATC 2 cut(s) 664, 963
Eco47I GGWCC 1 cut(s) 1657
Eco53kI GAGCTC 2 cut(s) 1525, 1680
Eco57I CTGAAG 2 cut(s) 117, 198
Eco81I CCTNAGG 1 cut(s) 696
Eco88I CYCGRG 2 cut(s) 1681, 1734
EcoICRI GAGCTC 2 cut(s) 1525, 1680
EcoRII CCWGG 2 cut(s) 1378, 1553
EcoRV GATATC 2 cut(s) 664, 963
EcoT14I CCWWGG 3 cut(s) 414, 546, 1511
EcoT38I GRGCYC 2 cut(s) 1527, 1682
ErhI CCWWGG 3 cut(s) 414, 546, 1511
FaeI CATG 2 cut(s) 173, 654
FaqI GGGAC 1 cut(s) 468
FatI CATG 2 cut(s) 169, 650
FauNDI CATATG 1 cut(s) 871
FblI GTMKAC 2 cut(s) 1042, 1699
Fnu4HI GCNGC 5 cut(s) 174, 237, 622, 1179, 1182
FokI GGATG 4 cut(s) 752, 821, 1430, 1595
FriOI GRGCYC 2 cut(s) 1527, 1682
Fsp4HI GCNGC 5 cut(s) 174, 237, 622, 1179, 1182
FspBI CTAG 3 cut(s) 827, 863, 1512
GluI GCNGC 5 cut(s) 174, 237, 622, 1179, 1182
GsuI CTGGAG 1 cut(s) 1710
HapII CCGG 2 cut(s) 1220, 1317
HgaI GACGC 3 cut(s) 599, 626, 1053
Hin1II CATG 2 cut(s) 173, 654
HinfI GANTC 5 cut(s) 187, 216, 301, 500, 755
HpaII CCGG 2 cut(s) 1220, 1317
Hpy166II GTNNAC 4 cut(s) 568, 1043, 1700, 1709
Hpy188III TCNNGA 6 cut(s) 230, 1211, 1220, 1520, 1594, 1683
Hpy8I GTNNAC 4 cut(s) 568, 1043, 1700, 1709
HpyCH4III ACNGT 4 cut(s) 254, 341, 405, 1717
HpyCH4IV ACGT 4 cut(s) 355, 685, 715, 921
HpyF10VI GCNNNNNNNGC 4 cut(s) 245, 1613, 1730, 1739
HpyF3I CTNAG 9 cut(s) 66, 393, 492, 696, 957, 1058, 1080, 1123, 1326
HpySE526I ACGT 4 cut(s) 355, 685, 715, 921
Hsp92II CATG 2 cut(s) 173, 654
Kpn2I TCCGGA 1 cut(s) 1219
Kzo9I GATC 8 cut(s) 226, 344, 815, 865, 1213, 1352, 1516, 1544
LmnI GCTCC 2 cut(s) 1429, 1691
Lsp1109I GCAGC 5 cut(s) 160, 248, 633, 1165, 1168
LweI GCATC 3 cut(s) 223, 1408, 1573
MabI ACCWGGT 1 cut(s) 1553
MaeI CTAG 3 cut(s) 827, 863, 1512
MaeII ACGT 4 cut(s) 355, 685, 715, 921
MaeIII GTNAC 1 cut(s) 362
MalI GATC 8 cut(s) 228, 346, 817, 867, 1215, 1354, 1518, 1546
MbiI CCGCTC 1 cut(s) 1135
MboI GATC 8 cut(s) 226, 344, 815, 865, 1213, 1352, 1516, 1544
MfeI CAATTG 1 cut(s) 305
MflI RGATCY 3 cut(s) 344, 865, 1544
MhlI GDGCHC 2 cut(s) 1527, 1682
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 4 cut(s) 37, 758, 1015, 1684
MroI TCCGGA 1 cut(s) 1219
MseI TTAA 9 cut(s) 20, 27, 324, 585, 735, 1269, 1335, 1413, 1571
MspI CCGG 2 cut(s) 1220, 1317
MspR9I CCNGG 3 cut(s) 1317, 1380, 1555
MunI CAATTG 1 cut(s) 305
Mva1269I GAATGC 3 cut(s) 523, 861, 976
MvaI CCWGG 2 cut(s) 1380, 1555
MvnI CGCG 1 cut(s) 637
MwoI GCNNNNNNNGC 4 cut(s) 245, 1613, 1730, 1739
NciI CCSGG 1 cut(s) 1317
NdeI CATATG 1 cut(s) 871
NdeII GATC 8 cut(s) 226, 344, 815, 865, 1213, 1352, 1516, 1544
NlaIII CATG 2 cut(s) 173, 654
NlaIV GGNNCC 2 cut(s) 267, 1092
NspV TTCGAA 1 cut(s) 703
PaeR7I CTCGAG 2 cut(s) 1681, 1734
PcsI WCGNNNNNNNCGW 1 cut(s) 1708
PctI GAATGC 3 cut(s) 523, 861, 976
PfeI GAWTC 4 cut(s) 216, 301, 500, 755
PflMI CCANNNNNTGG 1 cut(s) 1287
PkrI GCNGC 5 cut(s) 175, 238, 623, 1180, 1183
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
PshBI ATTAAT 2 cut(s) 324, 1335
PsiI TTATAA 1 cut(s) 438
Psp124BI GAGCTC 2 cut(s) 1527, 1682
Psp1406I AACGTT 2 cut(s) 685, 715
Psp6I CCWGG 2 cut(s) 1378, 1553
PspGI CCWGG 2 cut(s) 1378, 1553
PspN4I GGNNCC 2 cut(s) 267, 1092
PspPI GGNCC 1 cut(s) 1657
PspXI VCTCGAGB 1 cut(s) 1734
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 3 cut(s) 344, 865, 1544
SacI GAGCTC 2 cut(s) 1527, 1682
SaqAI TTAA 9 cut(s) 20, 27, 324, 585, 735, 1269, 1335, 1413, 1571
SatI GCNGC 5 cut(s) 174, 237, 622, 1179, 1182
Sau3AI GATC 8 cut(s) 226, 344, 815, 865, 1213, 1352, 1516, 1544
Sau96I GGNCC 1 cut(s) 1657
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 3 cut(s) 1317, 1380, 1555
SduI GDGCHC 2 cut(s) 1527, 1682
SexAI ACCWGGT 1 cut(s) 1553
SfaNI GCATC 3 cut(s) 223, 1408, 1573
SfcI CTRYAG 2 cut(s) 6, 337
Sfr274I CTCGAG 2 cut(s) 1681, 1734
SfuI TTCGAA 1 cut(s) 703
SinI GGWCC 1 cut(s) 1657
SlaI CTCGAG 2 cut(s) 1681, 1734
SmlI CTYRAG 3 cut(s) 1637, 1681, 1734
SmoI CTYRAG 3 cut(s) 1637, 1681, 1734
SsiI CCGC 2 cut(s) 1135, 1586
SspMI CTAG 3 cut(s) 827, 863, 1512
SstI GAGCTC 2 cut(s) 1527, 1682
StyD4I CCNGG 3 cut(s) 1315, 1378, 1553
StyI CCWWGG 3 cut(s) 414, 546, 1511
TaaI ACNGT 4 cut(s) 254, 341, 405, 1717
TaiI ACGT 4 cut(s) 358, 688, 718, 924
TaqI TCGA 6 cut(s) 146, 229, 703, 1020, 1682, 1735
TfiI GAWTC 4 cut(s) 216, 301, 500, 755
Tru1I TTAA 9 cut(s) 20, 27, 324, 585, 735, 1269, 1335, 1413, 1571
Tru9I TTAA 9 cut(s) 20, 27, 324, 585, 735, 1269, 1335, 1413, 1571
TscAI CASTG 2 cut(s) 673, 1722
TseI GCWGC 5 cut(s) 173, 236, 621, 1178, 1181
TspDTI ATGAA 9 cut(s) 158, 273, 468, 588, 624, 825, 930, 1182, 1520
TspRI CASTG 2 cut(s) 673, 1722
Van91I CCANNNNNTGG 1 cut(s) 1287
VpaK11BI GGWCC 1 cut(s) 1657
VspI ATTAAT 2 cut(s) 324, 1335
XapI RAATTY 1 cut(s) 61
XhoI CTCGAG 2 cut(s) 1681, 1734
XmaJI CCTAGG 1 cut(s) 1511
XmiI GTMKAC 2 cut(s) 1042, 1699
XspI CTAG 3 cut(s) 827, 863, 1512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.