Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004466

Physical Location & Seq

Genomic Coordinates Reverse (-)

23890546 .. 23893769

Gene Structure 3224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGAATCGCACCACGCGTCTCTAGGTCGCCGTACTTTGGAAGAGATTCGTCAAAAGAGAGCAGCTCAAAGGCTAAGCAAAGCTTCTTCAGGTCCAGATCTTAGTGAAATTCCCAATCCTGCCGATTTCCCAGTGATCAGAAAATCTGAGAGCGGAAATCGACTTTCTGAGACAGATGTTGGTGCTTTATATTCCCAGCTTAAAGAACTGCAGAAGAAGAATGCAGAAATGGAGGAGCGCAACAAAATTTTGTCTTCAAAGCTTCAAACGAAGGAAGTTGAGAATGAATCACTTGAGACTCGGTTGAATGTGCTGGAACAAAACACAGTGCCATCTCTGAGAAAAGCCCTCAAGGAAATTGCAATGGAGAAAGATGCTGCTGTTGTTTTACGAGAGGATCTCTCAGCTCAAGTTAGGACTCTTAAGAGACGTGTTAATCAGGCAGAGGAGGAACAATATCGAGCTGAGGAAGATGCAGCATCTCTTAGAGCAGAGCTTAATTCGATACAACAGCAAGCAATGGGTAATTCATTTGCTGGCATGTCGCCAATGGGAGTTTCCCCAGACCAACTACCAATATTAGAAAAGGAGATGGCTAACCTAAAACTAGAATTACAGAAAGAATCAGTGTTGAGGCAGCAAGAACAACATCGTTTAGCTGAAGAACAAACTCGAGTAGCTTCTTTAATGTCTGAAAAGCAGGAACTGGAACAGAAAATTTCAGTTTTATCCAGCAGGGCCTCAGAAGTATCAGAGTCTGGTCAAAAAGTATTTTCAGTGGAAGATAAAGAAAAACTCGAGAAGCAGTTGCATGATATGGCTGTTGCACTTGAAAGATTAGAGAGTAGTAGGCAAAAACTTCTCATGGAAATTGACAACCAATCATCTGAAATAGAGAAGCTATTTGAGGAAAACTCGAACCTCTCAGCTTCGTATCAAGAATCAATCAACATATCAAATCAGTGGGAGAATCAAGTGAAAGAATGTCTGAAGCAAAACGTAGAACTCCGTGAAGTTCTGGACAAGTTGAGAACAGAACAAGCTGGTTCTTTTTCACGAGGGCCTTCAGAATTTGAGGCAAATGGGTCGCATGGAACTGATACTCTATCCCTCAAGGGTGAACTTGCGAAAGAACAGAGCAGAGCGGAATCATTATCTGCTCAAGTCCTCCAACTCTCAGCTCAACTCCAGCAAGCAACACAAGCATACAATGGGCTTATGCGCATCTATAAACCTGTGCTTAGAAACATAGAGAGTAGCTTAATCAAGCTGAAGCAAGATGGATCGGTTACAGTGGCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

434

Amino Acids

48.9

Weight (kDa)

5.36

Isoelectric Point (pI)

60.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59210 AT5G59210
fragaria_vesca	FvH4_2g37740 FvH4_3g37100 FvH4_3g37100
malus_domestica	MD03G1084900.v1.1 MD11G1092400.v1.1
prunus_persica	Prupe.6G068200_v2.0.a1
pyrus_communis	pycom11g07770
rosa_chinensis	RchiOBHm_Chr5g0066731 RchiOBHm_Chr5g0066821
rosa_laevigata	RLG00000035876
rosa_multiflora	Rmu_sc0000605.1_g000050
rosa_roxburghii	Rroxscaffold_1G00014280 Rroxscaffold_1G00014310 Rroxscaffold_1G00014340 Rroxscaffold_1G00014360 Rroxscaffold_1G00014490 Rroxscaffold_1G00014520
rosa_rugosa	Rorug05G0379000 Rorug05G0379000
rosa_samantha	Rh5AG438200 Rh5AG438400 Rh5BG454000 Rh5BG454600 Rh5BG455400 Rh5CG476300 Rh5CG476900 Rh5CG477500 Rh5DG469100 Rh5DG470200
rosa_wichuraiana	Rw5G040960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1223
AccBSI	CCGCTC	2 cut(s)	153, 1145
AccII	CGCG	1 cut(s)	17
AciI	CCGC	2 cut(s)	153, 1145
AclWI	GGATC	2 cut(s)	405, 1291
AcsI	RAATTY	4 cut(s)	108, 246, 717, 1070
AcuI	CTGAAG	5 cut(s)	72, 681, 1010, 1050, 1292
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	37
AflII	CTTAAG	1 cut(s)	422
AflIII	ACRYGT	2 cut(s)	15, 430
AgsI	TTSAA	4 cut(s)	258, 266, 307, 833
AjiI	CACGTC	1 cut(s)	431
AjuI	GAANNNNNNNTTGG	2 cut(s)	541, 573
Alw26I	GTCTC	4 cut(s)	24, 164, 290, 421
AlwI	GGATC	2 cut(s)	405, 1291
AlwNI	CAGNNNCTG	2 cut(s)	706, 758
Ama87I	CYCGRG	2 cut(s)	672, 797
AoxI	GGCC	2 cut(s)	738, 1061
ApeKI	GCWGC	4 cut(s)	62, 377, 476, 637
ApoI	RAATTY	4 cut(s)	108, 246, 717, 1070
Asp700I	GAANNNNTTC	1 cut(s)	45
AspLEI	GCGC	2 cut(s)	240, 1224
AspS9I	GGNCC	3 cut(s)	92, 738, 1061
AsuHPI	GGTGA	1 cut(s)	1130
AvaI	CYCGRG	2 cut(s)	672, 797
AvaII	GGWCC	1 cut(s)	92
BauI	CACGAG	1 cut(s)	1056
BbsI	GAAGAC	1 cut(s)	246
BbvCI	CCTCAGC	1 cut(s)	465
BbvI	GCAGC	4 cut(s)	74, 364, 488, 649
BccI	CCATC	3 cut(s)	340, 586, 1274
BceAI	ACGGC	1 cut(s)	15
BcgI	CGANNNNNNTGC	2 cut(s)	1068, 1102
BclI	TGATCA	1 cut(s)	135
BcoDI	GTCTC	4 cut(s)	24, 164, 290, 421
BfaI	CTAG	2 cut(s)	23, 608
BfmI	CTRYAG	1 cut(s)	209
BfrI	CTTAAG	1 cut(s)	422
BglII	AGATCT	1 cut(s)	97
BisI	GCNGC	4 cut(s)	63, 378, 477, 638
BlpI	GCTNAGC	1 cut(s)	74
BlsI	GCNGC	4 cut(s)	64, 379, 478, 639
Bme18I	GGWCC	1 cut(s)	92
BmeT110I	CYCGRG	2 cut(s)	672, 797
BmgBI	CACGTC	1 cut(s)	431
BmgT120I	GGNCC	3 cut(s)	92, 738, 1061
BmrI	ACTGGG	1 cut(s)	125
BmsI	GCATC	4 cut(s)	364, 463, 488, 1233
BmuI	ACTGGG	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	246
BplI	GAGNNNNNCTC	8 cut(s)	49, 81, 384, 416, 386, 418, 899, 931
BpmI	CTGGAG	1 cut(s)	1172
Bpu10I	CCTNAGC	1 cut(s)	465
Bpu1102I	GCTNAGC	1 cut(s)	74
BpuEI	CTTGAG	5 cut(s)	314, 335, 393, 1097, 1146
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	2 cut(s)	131, 711
Bse3DI	GCAATG	2 cut(s)	369, 525
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	2 cut(s)	369, 525
BseMII	CTCAG	8 cut(s)	138, 159, 329, 417, 456, 756, 939, 1191
BseNI	ACTGG	2 cut(s)	131, 711
BseRI	GAGGAG	2 cut(s)	248, 461
BseXI	GCAGC	4 cut(s)	74, 364, 488, 649
BseYI	CCCAGC	1 cut(s)	195
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	2 cut(s)	740, 1063
BsiHKCI	CYCGRG	2 cut(s)	672, 797
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	4 cut(s)	24, 164, 290, 421
BsmBI	CGTCTC	2 cut(s)	24, 421
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	740, 1063
BsoBI	CYCGRG	2 cut(s)	672, 797
Bsp143I	GATC	4 cut(s)	97, 135, 397, 1283
Bsp1720I	GCTNAGC	1 cut(s)	74
BspACI	CCGC	2 cut(s)	153, 1145
BspANI	GGCC	2 cut(s)	740, 1063
BspCNI	CTCAG	8 cut(s)	139, 160, 330, 416, 457, 755, 938, 1190
BspFNI	CGCG	1 cut(s)	17
BspMAI	CTGCAG	1 cut(s)	213
BspPI	GGATC	2 cut(s)	405, 1291
BspTI	CTTAAG	1 cut(s)	422
BsrBI	CCGCTC	2 cut(s)	153, 1145
BsrDI	GCAATG	2 cut(s)	369, 525
BsrI	ACTGG	2 cut(s)	131, 711
BssMI	GATC	4 cut(s)	97, 135, 397, 1283
BssSI	CACGAG	1 cut(s)	1056
Bst2BI	CACGAG	1 cut(s)	1056
Bst4CI	ACNGT	3 cut(s)	328, 1294, 1302
Bst6I	CTCTTC	1 cut(s)	36
BstAFI	CTTAAG	1 cut(s)	422
BstC8I	GCNNGC	3 cut(s)	516, 538, 1194
BstFNI	CGCG	1 cut(s)	17
BstHHI	GCGC	2 cut(s)	240, 1224
BstKTI	GATC	4 cut(s)	100, 138, 400, 1286
BstMAI	GTCTC	4 cut(s)	24, 164, 290, 421
BstMBI	GATC	4 cut(s)	97, 135, 397, 1283
BstMWI	GCNNNNNNNGC	1 cut(s)	1202
BstNSI	RCATGY	1 cut(s)	544
BstSFI	CTRYAG	1 cut(s)	209
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	4 cut(s)	74, 364, 488, 649
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	2 cut(s)	97, 397
BstYI	RGATCY	2 cut(s)	97, 397
BsuRI	GGCC	2 cut(s)	740, 1063
BtrI	CACGTC	1 cut(s)	431
BtsIMutI	CAGTG	6 cut(s)	138, 333, 633, 783, 968, 1299
Cac8I	GCNNGC	3 cut(s)	516, 538, 1194
CaiI	CAGNNNCTG	2 cut(s)	706, 758
CfoI	GCGC	2 cut(s)	240, 1224
Cfr13I	GGNCC	3 cut(s)	92, 738, 1061
CseI	GACGC	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	4 cut(s)	541, 812, 865, 1091
CviQI	GTAC	1 cut(s)	33
DpnI	GATC	4 cut(s)	99, 137, 399, 1285
DpnII	GATC	4 cut(s)	97, 135, 397, 1283
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	92
Eco57I	CTGAAG	5 cut(s)	72, 681, 1010, 1050, 1292
Eco88I	CYCGRG	2 cut(s)	672, 797
EcoO109I	RGGNCCY	2 cut(s)	738, 1061
Esp3I	CGTCTC	2 cut(s)	24, 421
FaeI	CATG	4 cut(s)	544, 815, 868, 1094
FalI	AAGNNNNNCTT	2 cut(s)	67, 99
FatI	CATG	4 cut(s)	540, 811, 864, 1090
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	4 cut(s)	63, 378, 477, 638
Fsp4HI	GCNGC	4 cut(s)	63, 378, 477, 638
FspAI	RTGCGCAY	1 cut(s)	1223
FspBI	CTAG	2 cut(s)	23, 608
FspI	TGCGCA	1 cut(s)	1223
GlaI	GCGC	2 cut(s)	239, 1223
GluI	GCNGC	4 cut(s)	63, 378, 477, 638
GsaI	CCCAGC	1 cut(s)	199
GsuI	CTGGAG	1 cut(s)	1172
HaeIII	GGCC	2 cut(s)	740, 1063
HgaI	GACGC	1 cut(s)	6
HhaI	GCGC	2 cut(s)	240, 1224
Hin1II	CATG	4 cut(s)	544, 815, 868, 1094
Hin6I	GCGC	2 cut(s)	238, 1222
HinP1I	GCGC	2 cut(s)	238, 1222
HindIII	AAGCTT	2 cut(s)	81, 260
HphI	GGTGA	1 cut(s)	1130
Hpy166II	GTNNAC	1 cut(s)	1121
Hpy188III	TCNNGA	5 cut(s)	95, 799, 938, 1019, 1056
Hpy8I	GTNNAC	1 cut(s)	1121
HpyAV	CCTTC	2 cut(s)	265, 1074
HpyCH4III	ACNGT	3 cut(s)	328, 1294, 1302
HpyCH4IV	ACGT	2 cut(s)	430, 999
HpyCH4V	TGCA	6 cut(s)	211, 224, 362, 476, 811, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1202
HpySE526I	ACGT	2 cut(s)	430, 999
Hsp92II	CATG	4 cut(s)	544, 815, 868, 1094
HspAI	GCGC	2 cut(s)	238, 1222
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	4 cut(s)	97, 135, 397, 1283
LmnI	GCTCC	1 cut(s)	235
Lsp1109I	GCAGC	4 cut(s)	74, 364, 488, 649
LweI	GCATC	4 cut(s)	364, 463, 488, 1233
MaeI	CTAG	2 cut(s)	23, 608
MaeII	ACGT	2 cut(s)	430, 999
MaeIII	GTNAC	1 cut(s)	1288
MalI	GATC	4 cut(s)	99, 137, 399, 1285
MbiI	CCGCTC	2 cut(s)	153, 1145
MboI	GATC	4 cut(s)	97, 135, 397, 1283
MboII	GAAGA	8 cut(s)	53, 78, 226, 229, 246, 482, 674, 794
MflI	RGATCY	2 cut(s)	97, 397
MluCI	AATT	9 cut(s)	108, 246, 357, 499, 526, 611, 717, 870, 1070
MluI	ACGCGT	1 cut(s)	15
MlyI	GAGTC	3 cut(s)	292, 412, 764
MmeI	TCCRAC	1 cut(s)	1195
MroXI	GAANNNNTTC	1 cut(s)	45
MseI	TTAA	6 cut(s)	201, 423, 435, 498, 686, 1262
MspCI	CTTAAG	1 cut(s)	422
Mva1269I	GAATGC	1 cut(s)	226
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	1202
NdeII	GATC	4 cut(s)	97, 135, 397, 1283
NlaIII	CATG	4 cut(s)	544, 815, 868, 1094
NsbI	TGCGCA	1 cut(s)	1223
NspI	RCATGY	1 cut(s)	544
PaeR7I	CTCGAG	2 cut(s)	672, 797
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PctI	GAATGC	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	7 cut(s)	5, 46, 287, 623, 941, 970, 1148
PkrI	GCNGC	4 cut(s)	64, 379, 478, 639
PleI	GAGTC	3 cut(s)	292, 412, 763
PpsI	GAGTC	3 cut(s)	292, 412, 763
PspFI	CCCAGC	1 cut(s)	195
PspPI	GGNCC	3 cut(s)	92, 738, 1061
PspXI	VCTCGAGB	1 cut(s)	672
PstI	CTGCAG	1 cut(s)	213
PstNI	CAGNNNCTG	2 cut(s)	706, 758
PsuI	RGATCY	2 cut(s)	97, 397
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SaqAI	TTAA	6 cut(s)	201, 423, 435, 498, 686, 1262
SatI	GCNGC	4 cut(s)	63, 378, 477, 638
Sau3AI	GATC	4 cut(s)	97, 135, 397, 1283
Sau96I	GGNCC	3 cut(s)	92, 738, 1061
SchI	GAGTC	3 cut(s)	292, 412, 764
SfaNI	GCATC	4 cut(s)	364, 463, 488, 1233
SfcI	CTRYAG	1 cut(s)	209
Sfr274I	CTCGAG	2 cut(s)	672, 797
SinI	GGWCC	1 cut(s)	92
SlaI	CTCGAG	2 cut(s)	672, 797
SmlI	CTYRAG	8 cut(s)	293, 350, 408, 422, 672, 797, 1112, 1161
SmoI	CTYRAG	8 cut(s)	293, 350, 408, 422, 672, 797, 1112, 1161
Sse9I	AATT	9 cut(s)	108, 246, 357, 499, 526, 611, 717, 870, 1070
SsiI	CCGC	2 cut(s)	153, 1145
SspI	AATATT	1 cut(s)	579
SspMI	CTAG	2 cut(s)	23, 608
TaaI	ACNGT	3 cut(s)	328, 1294, 1302
TaiI	ACGT	2 cut(s)	433, 1002
TaqI	TCGA	6 cut(s)	160, 460, 503, 673, 798, 917
TasI	AATT	9 cut(s)	108, 246, 357, 499, 526, 611, 717, 870, 1070
TfiI	GAWTC	7 cut(s)	5, 46, 287, 623, 941, 970, 1148
Tru1I	TTAA	6 cut(s)	201, 423, 435, 498, 686, 1262
Tru9I	TTAA	6 cut(s)	201, 423, 435, 498, 686, 1262
TscAI	CASTG	6 cut(s)	138, 333, 633, 783, 968, 1299
TseI	GCWGC	4 cut(s)	62, 377, 476, 637
TspDTI	ATGAA	2 cut(s)	300, 519
TspGWI	ACGGA	1 cut(s)	998
TspRI	CASTG	6 cut(s)	138, 333, 633, 783, 968, 1299
Vha464I	CTTAAG	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	92
XapI	RAATTY	4 cut(s)	108, 246, 717, 1070
XceI	RCATGY	1 cut(s)	544
XhoI	CTCGAG	2 cut(s)	672, 797
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	2 cut(s)	23, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.