Rroxscaffold_1G00014310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004466
Physical Location & Seq
Forward (+)
17615136 .. 17618975
3840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00014310.1

Sequence Viewer

Length: 1032 bp
ATGAGAAAATCGGAGAGCGCGAATCGACTCTCTGAGAGCGATGTTAGTACTTTCGTTTCTCAGATAAGAGACTTGGATAGGAAGAATGCAGAACTGGAAGAACAAAACAAAAATTTGGCTTCCATGCTTGAAACAAAGGAAGCCGGGACTACTGTACTGCAGAAACGCTTGAATGATCTGCAAAATACTGTACCATCTTTGAGGAAAGCTCTCAAGGATGTCGCAATGGAGAAAGATGCAGCAGTTGTTGCACGGGAGGATCTCTCAGCCCAGCTGCGTATGCTCAAGAAACGTCTAAAGGATGCAGAAGAAGAACAGTATCGAGCTGAGGAAGATGCAGCATCCCTGAGAGCAGAACTCAATATGATACAGCAACAAACAATGAGTGGCTCACTTGGTGCACTAAACTCAATTGCTAATCCACCTGATCAGATAAAAACATTAGAAATTGAGTTGGCTAACATAAAGTCTGAGTTACAGCAATTAGCAGAGGAGCAGGCTCGAGCATCCATCCTTACATCTGAGAAGCAAGAATTGGAAGAAAAACTTGCAGCTTTGTCTAGAAAGTCTTCAGGCACCATAGCATATTACAATTCTCAACATGGAGTGGCTTTTAGATATTTTGAGCAATATCCATTGCCCTGGATAAGTGTCAGAGAAAGTGGCCAGCGAGGGATTTTCATTAATAGAAAGGCTTTTGAGGAAAACTCTAATTTATCTAGTTATCATCAGGAGGCTATGAGCATAGCTTTGTACTGGGAGAATCAGGTGAAAGACTGTCTTAAGCAAAATGAAGAGCTCCGAGGAATCTTAGATAAGTTAAGAACTGACCAGGCCAAGGGGTTGCTCGACTCCCATAGCAATGGCTCTAACAAGACTGGTTTAGCTGAATATACACCTGAAGTTCTCCCTATCAAGGATAAACTTGCAAAAGAACAGGGCAAAGCAGAGGCATTATCAGCTGAGGTATTACAGCTCTCAGCAAGACTCCAACAAACCACTCAAGCATACAATGGTCTTGTACGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

343

Amino Acids

38.59

Weight (kDa)

5.59

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 575
AccII CGCG 1 cut(s) 20
AclWI GGATC 1 cut(s) 267
AcoI YGGCCR 1 cut(s) 664
AcsI RAATTY 1 cut(s) 112
AcuI CTGAAG 2 cut(s) 555, 921
AdeI CACNNNGTG 1 cut(s) 398
AfaI GTAC 5 cut(s) 49, 156, 192, 755, 1023
AfiI CCNNNNNNNGG 2 cut(s) 838, 916
AflII CTTAAG 1 cut(s) 782
AgsI TTSAA 2 cut(s) 131, 172
AjnI CCWGG 2 cut(s) 641, 831
AjuI GAANNNNNNNTTGG 2 cut(s) 518, 550
AluBI AGCT 9 cut(s) 209, 274, 326, 554, 749, 799, 887, 962, 976
AluI AGCT 9 cut(s) 209, 274, 326, 554, 749, 799, 887, 962, 976
Alw21I GWGCWC 2 cut(s) 403, 801
Alw26I GTCTC 1 cut(s) 63
Alw44I GTGCAC 1 cut(s) 399
AlwI GGATC 1 cut(s) 267
Ama87I CYCGRG 1 cut(s) 501
AoxI GGCC 2 cut(s) 664, 834
ApaLI GTGCAC 1 cut(s) 399
ApeKI GCWGC 4 cut(s) 239, 274, 338, 551
ApoI RAATTY 1 cut(s) 112
AseI ATTAAT 1 cut(s) 684
Asp700I GAANNNNTTC 1 cut(s) 568
AspLEI GCGC 1 cut(s) 20
AsuC2I CCSGG 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 781
AvaI CYCGRG 1 cut(s) 501
BaeGI GKGCMC 1 cut(s) 403
BalI TGGCCA 1 cut(s) 666
BanI GGYRCC 1 cut(s) 575
BanII GRGCYC 1 cut(s) 801
BbsI GAAGAC 1 cut(s) 561
Bbv12I GWGCWC 2 cut(s) 403, 801
BbvCI CCTCAGC 2 cut(s) 327, 963
BbvI GCAGC 4 cut(s) 251, 261, 350, 563
BccI CCATC 2 cut(s) 202, 518
BciT130I CCWGG 2 cut(s) 643, 833
BclI TGATCA 1 cut(s) 427
BcnI CCSGG 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 2 cut(s) 561, 720
BfmI CTRYAG 1 cut(s) 158
BfrI CTTAAG 1 cut(s) 782
BisI GCNGC 4 cut(s) 240, 275, 339, 552
BlsI GCNGC 4 cut(s) 241, 276, 340, 553
BmcAI AGTACT 1 cut(s) 49
Bme1390I CCNGG 3 cut(s) 145, 643, 833
BmeT110I CYCGRG 1 cut(s) 501
BmiI GGNNCC 1 cut(s) 577
BmrFI CCNGG 3 cut(s) 145, 643, 833
BmrI ACTGGG 1 cut(s) 766
BmsI GCATC 5 cut(s) 226, 292, 325, 350, 515
BmuI ACTGGG 1 cut(s) 766
BpiI GAAGAC 1 cut(s) 561
BplI GAGNNNNNCTC 8 cut(s) 193, 225, 248, 280, 342, 374, 692, 724
Bpu10I CCTNAGC 2 cut(s) 327, 963
BpuEI CTTGAG 3 cut(s) 197, 269, 987
BpuMI CCSGG 1 cut(s) 145
BsaJI CCNNGG 3 cut(s) 641, 802, 837
Bsc4I CCNNNNNNNGG 2 cut(s) 838, 916
Bse1I ACTGG 3 cut(s) 99, 761, 883
Bse3DI GCAATG 3 cut(s) 231, 635, 868
BseBI CCWGG 2 cut(s) 643, 833
BseDI CCNNGG 3 cut(s) 641, 802, 837
BseGI GGATG 5 cut(s) 223, 307, 341, 506, 510
BseLI CCNNNNNNNGG 2 cut(s) 838, 916
BseMI GCAATG 3 cut(s) 231, 635, 868
BseMII CTCAG 9 cut(s) 24, 74, 279, 318, 338, 462, 513, 954, 993
BseNI ACTGG 3 cut(s) 99, 761, 883
BseRI GAGGAG 1 cut(s) 506
BseSI GKGCMC 1 cut(s) 403
BseXI GCAGC 4 cut(s) 251, 261, 350, 563
BseYI CCCAGC 1 cut(s) 270
Bsh1236I CGCG 1 cut(s) 20
BshFI GGCC 2 cut(s) 666, 836
BshNI GGYRCC 1 cut(s) 575
BsiHKAI GWGCWC 2 cut(s) 403, 801
BsiHKCI CYCGRG 1 cut(s) 501
BsiSI CCGG 1 cut(s) 144
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 2 cut(s) 838, 916
BsmAI GTCTC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 160
BsmI GAATGC 1 cut(s) 91
BsnI GGCC 2 cut(s) 666, 836
BsoBI CYCGRG 1 cut(s) 501
Bsp1286I GDGCHC 2 cut(s) 403, 801
Bsp143I GATC 3 cut(s) 175, 259, 427
BspANI GGCC 2 cut(s) 666, 836
BspCNI CTCAG 9 cut(s) 25, 73, 278, 319, 339, 463, 514, 955, 992
BspFNI CGCG 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 577
BspMAI CTGCAG 1 cut(s) 162
BspPI GGATC 1 cut(s) 267
BspQI GCTCTTC 1 cut(s) 789
BspT107I GGYRCC 1 cut(s) 575
BspTI CTTAAG 1 cut(s) 782
BsrDI GCAATG 3 cut(s) 231, 635, 868
BsrI ACTGG 3 cut(s) 99, 761, 883
BssECI CCNNGG 3 cut(s) 641, 802, 837
BssMI GATC 3 cut(s) 175, 259, 427
BssT1I CCWWGG 1 cut(s) 837
Bst2UI CCWGG 2 cut(s) 643, 833
Bst4CI ACNGT 4 cut(s) 154, 190, 318, 779
Bst6I CTCTTC 1 cut(s) 789
BstAFI CTTAAG 1 cut(s) 782
BstAPI GCANNNNNTGC 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 498, 668
BstF5I GGATG 5 cut(s) 223, 307, 341, 506, 510
BstFNI CGCG 1 cut(s) 20
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 3 cut(s) 178, 262, 430
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 3 cut(s) 175, 259, 427
BstMWI GCNNNNNNNGC 3 cut(s) 248, 280, 959
BstNI CCWGG 2 cut(s) 643, 833
BstSCI CCNGG 3 cut(s) 143, 641, 831
BstSFI CTRYAG 1 cut(s) 158
BstSLI GKGCMC 1 cut(s) 403
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 4 cut(s) 251, 261, 350, 563
BstV2I GAAGAC 1 cut(s) 561
BstX2I RGATCY 1 cut(s) 259
BstXI CCANNNNNNTGG 2 cut(s) 642, 863
BstYI RGATCY 1 cut(s) 259
BsuRI GGCC 2 cut(s) 666, 836
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 5 cut(s) 223, 307, 341, 506, 510
Cac8I GCNNGC 2 cut(s) 498, 668
CfoI GCGC 1 cut(s) 20
Csp6I GTAC 5 cut(s) 48, 155, 191, 754, 1022
CviAII CATG 2 cut(s) 124, 602
CviQI GTAC 5 cut(s) 48, 155, 191, 754, 1022
DpnI GATC 3 cut(s) 177, 261, 429
DpnII GATC 3 cut(s) 175, 259, 427
DraIII CACNNNGTG 1 cut(s) 398
EaeI YGGCCR 1 cut(s) 664
Eam1104I CTCTTC 1 cut(s) 789
EarI CTCTTC 1 cut(s) 789
Ecl136II GAGCTC 1 cut(s) 799
Eco130I CCWWGG 1 cut(s) 837
Eco24I GRGCYC 1 cut(s) 801
Eco53kI GAGCTC 1 cut(s) 799
Eco57I CTGAAG 2 cut(s) 555, 921
Eco88I CYCGRG 1 cut(s) 501
EcoICRI GAGCTC 1 cut(s) 799
EcoRII CCWGG 2 cut(s) 641, 831
EcoT14I CCWWGG 1 cut(s) 837
EcoT38I GRGCYC 1 cut(s) 801
ErhI CCWWGG 1 cut(s) 837
FaeI CATG 2 cut(s) 127, 605
FalI AAGNNNNNCTT 4 cut(s) 531, 563, 765, 797
FaqI GGGAC 1 cut(s) 160
FatI CATG 2 cut(s) 123, 601
FbaI TGATCA 1 cut(s) 427
Fnu4HI GCNGC 4 cut(s) 240, 275, 339, 552
FokI GGATG 5 cut(s) 230, 314, 328, 493, 497
FriOI GRGCYC 1 cut(s) 801
Fsp4HI GCNGC 4 cut(s) 240, 275, 339, 552
FspBI CTAG 2 cut(s) 561, 720
GlaI GCGC 1 cut(s) 19
GluI GCNGC 4 cut(s) 240, 275, 339, 552
GsaI CCCAGC 1 cut(s) 274
HaeIII GGCC 2 cut(s) 666, 836
HapII CCGG 1 cut(s) 144
HhaI GCGC 1 cut(s) 20
Hin1II CATG 2 cut(s) 127, 605
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HinfI GANTC 6 cut(s) 22, 27, 763, 807, 851, 987
HpaII CCGG 1 cut(s) 144
HphI GGTGA 1 cut(s) 781
Hpy166II GTNNAC 1 cut(s) 401
Hpy188I TCNGA 8 cut(s) 13, 34, 63, 432, 472, 523, 656, 803
Hpy188III TCNNGA 3 cut(s) 286, 561, 731
Hpy8I GTNNAC 1 cut(s) 401
HpyCH4III ACNGT 4 cut(s) 154, 190, 318, 779
HpyCH4IV ACGT 2 cut(s) 292, 1024
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 280, 959
HpySE526I ACGT 2 cut(s) 292, 1024
Hsp92II CATG 2 cut(s) 127, 605
HspAI GCGC 1 cut(s) 18
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 3 cut(s) 175, 259, 427
LguI GCTCTTC 1 cut(s) 789
LmnI GCTCC 2 cut(s) 493, 804
Lsp1109I GCAGC 4 cut(s) 251, 261, 350, 563
LweI GCATC 5 cut(s) 226, 292, 325, 350, 515
MaeI CTAG 2 cut(s) 561, 720
MaeII ACGT 2 cut(s) 292, 1024
MaeIII GTNAC 1 cut(s) 474
MalI GATC 3 cut(s) 177, 261, 429
MboI GATC 3 cut(s) 175, 259, 427
MboII GAAGA 8 cut(s) 94, 110, 320, 323, 344, 551, 561, 806
MfeI CAATTG 1 cut(s) 411
MflI RGATCY 1 cut(s) 259
MhlI GDGCHC 2 cut(s) 403, 801
MlsI TGGCCA 1 cut(s) 666
MluCI AATT 7 cut(s) 112, 411, 447, 482, 533, 592, 712
MluNI TGGCCA 1 cut(s) 666
MlyI GAGTC 3 cut(s) 21, 845, 981
MmeI TCCRAC 1 cut(s) 1015
Mox20I TGGCCA 1 cut(s) 666
MroXI GAANNNNTTC 1 cut(s) 568
MscI TGGCCA 1 cut(s) 666
MseI TTAA 3 cut(s) 684, 783, 821
MslI CAYNNNNRTG 1 cut(s) 861
Msp20I TGGCCA 1 cut(s) 666
MspA1I CMGCKG 2 cut(s) 274, 962
MspCI CTTAAG 1 cut(s) 782
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 3 cut(s) 145, 643, 833
MunI CAATTG 1 cut(s) 411
Mva1269I GAATGC 1 cut(s) 91
MvaI CCWGG 2 cut(s) 643, 833
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 3 cut(s) 248, 280, 959
NciI CCSGG 1 cut(s) 145
NdeII GATC 3 cut(s) 175, 259, 427
NlaIII CATG 2 cut(s) 127, 605
NlaIV GGNNCC 1 cut(s) 577
PaeR7I CTCGAG 1 cut(s) 501
PciSI GCTCTTC 1 cut(s) 789
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PctI GAATGC 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 568
PfeI GAWTC 3 cut(s) 22, 763, 807
PkrI GCNGC 4 cut(s) 241, 276, 340, 553
PleI GAGTC 3 cut(s) 21, 845, 981
PpsI GAGTC 3 cut(s) 21, 845, 981
PshBI ATTAAT 1 cut(s) 684
Psp124BI GAGCTC 1 cut(s) 801
Psp6I CCWGG 2 cut(s) 641, 831
PspFI CCCAGC 1 cut(s) 270
PspGI CCWGG 2 cut(s) 641, 831
PspN4I GGNNCC 1 cut(s) 577
PspXI VCTCGAGB 1 cut(s) 501
PstI CTGCAG 1 cut(s) 162
PsuI RGATCY 1 cut(s) 259
PvuII CAGCTG 2 cut(s) 274, 962
RsaI GTAC 5 cut(s) 49, 156, 192, 755, 1023
RsaNI GTAC 5 cut(s) 48, 155, 191, 754, 1022
RseI CAYNNNNRTG 1 cut(s) 861
SacI GAGCTC 1 cut(s) 801
SapI GCTCTTC 1 cut(s) 789
SaqAI TTAA 3 cut(s) 684, 783, 821
SatI GCNGC 4 cut(s) 240, 275, 339, 552
Sau3AI GATC 3 cut(s) 175, 259, 427
ScaI AGTACT 1 cut(s) 49
SchI GAGTC 3 cut(s) 21, 845, 981
ScrFI CCNGG 3 cut(s) 145, 643, 833
SduI GDGCHC 2 cut(s) 403, 801
SfaNI GCATC 5 cut(s) 226, 292, 325, 350, 515
SfcI CTRYAG 1 cut(s) 158
Sfr274I CTCGAG 1 cut(s) 501
SlaI CTCGAG 1 cut(s) 501
SmiMI CAYNNNNRTG 1 cut(s) 861
SmlI CTYRAG 5 cut(s) 212, 284, 501, 782, 1002
SmoI CTYRAG 5 cut(s) 212, 284, 501, 782, 1002
Sse9I AATT 7 cut(s) 112, 411, 447, 482, 533, 592, 712
SspMI CTAG 2 cut(s) 561, 720
SstI GAGCTC 1 cut(s) 801
StyD4I CCNGG 3 cut(s) 143, 641, 831
StyI CCWWGG 1 cut(s) 837
TaaI ACNGT 4 cut(s) 154, 190, 318, 779
TaiI ACGT 2 cut(s) 295, 1027
TaqI TCGA 4 cut(s) 25, 322, 502, 849
TasI AATT 7 cut(s) 112, 411, 447, 482, 533, 592, 712
TatI WGTACW 3 cut(s) 47, 154, 753
TfiI GAWTC 3 cut(s) 22, 763, 807
Tru1I TTAA 3 cut(s) 684, 783, 821
Tru9I TTAA 3 cut(s) 684, 783, 821
TseI GCWGC 4 cut(s) 239, 274, 338, 551
TspDTI ATGAA 2 cut(s) 670, 807
Vha464I CTTAAG 1 cut(s) 782
VneI GTGCAC 1 cut(s) 399
VspI ATTAAT 1 cut(s) 684
XapI RAATTY 1 cut(s) 112
XbaI TCTAGA 1 cut(s) 560
XhoI CTCGAG 1 cut(s) 501
XmnI GAANNNNTTC 1 cut(s) 568
XspI CTAG 2 cut(s) 561, 720
ZrmI AGTACT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.