Rroxscaffold_1G00014520

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
17967105 .. 17975047
7943 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00014520.1

Sequence Viewer

Length: 1275 bp
ATGCTACGGTCTTCTTGTGCGTGTTTCACCTTCACGGTTCTACCTCGGTGTTCGCTGAAGGGAGGTTTCGCCGGTGGCCTTGTTCGGCCATCGATGCTGGTCACATTTCGACCGAAGCGTGCGTGGTCGGTGAGAAAGCGAGGAGGTGCAGTCGTTATGCAATGCGGGTCCTCTGGAATCGAAACAAAACAGAGAGCCAGAAACGCCGTGCTGAGGCTGAAGAGGGAAAACCATCCTCCTCAGCCTCACCTTCGCTCTACCATGGATTCCCGGCACGCATCTCTAGGCCGCCGAACGATAAGAGACTTGGATAGGAAGAATGCAGAACTGGAAGAACAAATTAAAAATTTGGCTTCCATGGAGCAAAATACTGTACCGTCTTTGAGGAAAGCTCTCAAGGATGTCTCAATGGAGAAAGATGCAGCAGTTGTTGCACGGGAGGATCTCTCTGCTCAGCTGCGTATGCTCAAGAAACGTCTAAAGGACGCAGAAGAAGAACAGTATCGAGCTGAGGAAGATGCAGCATCCCTGAGAGCAGAACTCAATATGATACAGCAACAAACAATGAGTGGCTCACTTGGTGCACTAAACTCAATTGCTAATCCACCTGATCAGATAAAAACATTAGAAATTGAGTTGGCTAACATAAAGTCTGAGTTACAGCGAGAGTCAATGTTTAGACAGCAAGAACGACAGCAATTAGCAGAGGAGCAGGCTCGAGCATCCATCCTTACATCTGAGAAGCAAGAATTGGAAGAAAAGCTGGCAGCTTTGTCTAGAAAGTCTTCAGGTACCATAGCATATTACAATTCTCAACTAGGAGTGGCTTTTAGATGTTTTGAGCTATATCCATTGCCCTGGATCCAGGAAGACAAGGAGATACTCGAGAAGCAGATGCAGAACATGGCTGTAGTGATTGAGAAATTGGAAAGCAGTAGACAAAAGCTTTTAATGGAGCAAAATGAAGAGCTCCGAGGAATCTTAGATGAGTTAAGAACTGACCAGGCCAAGGGGTTACTCGACTCCCATAGCAATGGCTCTAACAAGACTGGTTTAGCTGAATATACACCTGAAGTTCTCCCTATCAAGGATCAACTTGCAAAAGAACAGAGCAAAGCAGAGGCATTATCAGCTGAGGTCTTACAGCTCTCAGCAAGACTCCAACAAACCACTCAAGCATACAATGGGCTTGCACGCCTCTATAAACCGGTGTTGCGAAACATAGAAAGCAGTCTCATTAAGATGAAACAAGATGGCCCTGTTACAGTGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

424

Amino Acids

47.82

Weight (kDa)

9.19

Isoelectric Point (pI)

62.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 791
AccB1I GGYRCC 1 cut(s) 791
AccI GTMKAC 1 cut(s) 937
AciI CCGC 2 cut(s) 165, 289
AclWI GGATC 4 cut(s) 450, 856, 869, 1098
AcoI YGGCCR 1 cut(s) 86
AcsI RAATTY 1 cut(s) 346
AcuI CTGAAG 4 cut(s) 77, 239, 771, 1092
AdeI CACNNNGTG 1 cut(s) 581
AfaI GTAC 2 cut(s) 375, 793
AfiI CCNNNNNNNGG 3 cut(s) 213, 1009, 1087
AgeI ACCGGT 1 cut(s) 1207
AjnI CCWGG 3 cut(s) 857, 864, 1002
AjuI GAANNNNNNNTTGG 2 cut(s) 734, 766
Alw21I GWGCWC 2 cut(s) 586, 972
Alw26I GTCTC 3 cut(s) 297, 409, 1238
Alw44I GTGCAC 1 cut(s) 582
AlwI GGATC 4 cut(s) 450, 856, 869, 1098
Ama87I CYCGRG 2 cut(s) 717, 884
AoxI GGCC 5 cut(s) 76, 86, 286, 1005, 1255
ApaLI GTGCAC 1 cut(s) 582
ApeKI GCWGC 4 cut(s) 422, 457, 521, 767
ApoI RAATTY 1 cut(s) 346
AsiGI ACCGGT 1 cut(s) 1207
Asp700I GAANNNNTTC 1 cut(s) 784
Asp718I GGTACC 1 cut(s) 791
AspS9I GGNCC 2 cut(s) 168, 1256
AsuC2I CCSGG 1 cut(s) 271
AsuHPI GGTGA 3 cut(s) 19, 142, 239
AvaI CYCGRG 2 cut(s) 717, 884
AvaII GGWCC 1 cut(s) 168
BaeGI GKGCMC 1 cut(s) 586
BamHI GGATCC 1 cut(s) 861
BanI GGYRCC 1 cut(s) 791
BanII GRGCYC 1 cut(s) 972
BbsI GAAGAC 3 cut(s) 3, 777, 876
Bbv12I GWGCWC 2 cut(s) 586, 972
BbvCI CCTCAGC 4 cut(s) 212, 240, 510, 1134
BbvI GCAGC 4 cut(s) 434, 444, 533, 779
BccI CCATC 4 cut(s) 97, 240, 734, 1247
BceAI ACGGC 1 cut(s) 191
BciT130I CCWGG 3 cut(s) 859, 866, 1004
BclI TGATCA 1 cut(s) 610
BcnI CCSGG 1 cut(s) 271
BcoDI GTCTC 3 cut(s) 297, 409, 1238
BfaI CTAG 3 cut(s) 284, 777, 818
BfmI CTRYAG 1 cut(s) 909
BisI GCNGC 5 cut(s) 289, 423, 458, 522, 768
BlpI GCTNAGC 1 cut(s) 453
BlsI GCNGC 5 cut(s) 290, 424, 459, 523, 769
Bme1390I CCNGG 4 cut(s) 271, 859, 866, 1004
Bme18I GGWCC 1 cut(s) 168
BmeT110I CYCGRG 2 cut(s) 717, 884
BmgT120I GGNCC 2 cut(s) 168, 1256
BmiI GGNNCC 3 cut(s) 169, 793, 863
BmrFI CCNGG 4 cut(s) 271, 859, 866, 1004
BmsI GCATC 7 cut(s) 84, 287, 409, 508, 533, 731, 885
BpiI GAAGAC 3 cut(s) 3, 777, 876
BplI GAGNNNNNCTC 6 cut(s) 376, 408, 431, 463, 525, 557
Bpu10I CCTNAGC 4 cut(s) 212, 240, 510, 1134
Bpu1102I GCTNAGC 1 cut(s) 453
BpuEI CTTGAG 3 cut(s) 380, 452, 1158
BpuMI CCSGG 1 cut(s) 271
Bsa29I ATCGAT 1 cut(s) 92
BsaJI CCNNGG 6 cut(s) 44, 261, 357, 857, 973, 1008
BsaWI WCCGGW 1 cut(s) 1207
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 3 cut(s) 213, 1009, 1087
Bse118I RCCGGY 2 cut(s) 71, 1207
Bse1I ACTGG 2 cut(s) 333, 1054
Bse3DI GCAATG 3 cut(s) 167, 851, 1039
BseBI CCWGG 3 cut(s) 859, 866, 1004
BseCI ATCGAT 1 cut(s) 92
BseDI CCNNGG 6 cut(s) 44, 261, 357, 857, 973, 1008
BseGI GGATG 5 cut(s) 232, 406, 524, 722, 726
BseLI CCNNNNNNNGG 3 cut(s) 213, 1009, 1087
BseMI GCAATG 3 cut(s) 167, 851, 1039
BseMII CTCAG 9 cut(s) 203, 254, 467, 501, 521, 645, 729, 1125, 1164
BseNI ACTGG 2 cut(s) 333, 1054
BseRI GAGGAG 3 cut(s) 156, 228, 722
BseSI GKGCMC 1 cut(s) 586
BseXI GCAGC 4 cut(s) 434, 444, 533, 779
BsgI GTGCAG 1 cut(s) 168
Bsh1285I CGRYCG 1 cut(s) 113
BshFI GGCC 5 cut(s) 78, 88, 288, 1007, 1257
BshNI GGYRCC 1 cut(s) 791
BshTI ACCGGT 1 cut(s) 1207
BshVI ATCGAT 1 cut(s) 92
BsiEI CGRYCG 1 cut(s) 113
BsiHKAI GWGCWC 2 cut(s) 586, 972
BsiHKCI CYCGRG 2 cut(s) 717, 884
BsiSI CCGG 3 cut(s) 72, 271, 1208
BslI CCNNNNNNNGG 3 cut(s) 213, 1009, 1087
BsmAI GTCTC 3 cut(s) 297, 409, 1238
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 5 cut(s) 78, 88, 288, 1007, 1257
BsoBI CYCGRG 2 cut(s) 717, 884
Bsp1286I GDGCHC 2 cut(s) 586, 972
Bsp143I GATC 4 cut(s) 442, 610, 861, 1090
Bsp1720I GCTNAGC 1 cut(s) 453
Bsp19I CCATGG 2 cut(s) 261, 357
BspACI CCGC 2 cut(s) 165, 289
BspANI GGCC 5 cut(s) 78, 88, 288, 1007, 1257
BspCNI CTCAG 9 cut(s) 204, 253, 466, 502, 522, 646, 730, 1126, 1163
BspDI ATCGAT 1 cut(s) 92
BspLI GGNNCC 3 cut(s) 169, 793, 863
BspPI GGATC 4 cut(s) 450, 856, 869, 1098
BspQI GCTCTTC 1 cut(s) 960
BspT107I GGYRCC 1 cut(s) 791
BsrDI GCAATG 3 cut(s) 167, 851, 1039
BsrFI RCCGGY 2 cut(s) 71, 1207
BsrI ACTGG 2 cut(s) 333, 1054
BssAI RCCGGY 2 cut(s) 71, 1207
BssECI CCNNGG 6 cut(s) 44, 261, 357, 857, 973, 1008
BssMI GATC 4 cut(s) 442, 610, 861, 1090
BssT1I CCWWGG 3 cut(s) 261, 357, 1008
Bst2UI CCWGG 3 cut(s) 859, 866, 1004
Bst4CI ACNGT 6 cut(s) 9, 37, 373, 378, 501, 1267
Bst6I CTCTTC 2 cut(s) 215, 960
BstAPI GCANNNNNTGC 1 cut(s) 431
BstC8I GCNNGC 6 cut(s) 120, 276, 714, 765, 1191, 1195
BstDSI CCRYGG 2 cut(s) 261, 357
BstF5I GGATG 5 cut(s) 232, 406, 524, 722, 726
BstKTI GATC 4 cut(s) 445, 613, 864, 1093
BstMAI GTCTC 3 cut(s) 297, 409, 1238
BstMBI GATC 4 cut(s) 442, 610, 861, 1090
BstMCI CGRYCG 1 cut(s) 113
BstMWI GCNNNNNNNGC 5 cut(s) 94, 203, 431, 463, 1130
BstNI CCWGG 3 cut(s) 859, 866, 1004
BstSCI CCNGG 4 cut(s) 269, 857, 864, 1002
BstSFI CTRYAG 1 cut(s) 909
BstSLI GKGCMC 1 cut(s) 586
BstV1I GCAGC 4 cut(s) 434, 444, 533, 779
BstV2I GAAGAC 3 cut(s) 3, 777, 876
BstX2I RGATCY 2 cut(s) 442, 861
BstXI CCANNNNNNTGG 2 cut(s) 858, 1034
BstYI RGATCY 2 cut(s) 442, 861
Bsu15I ATCGAT 1 cut(s) 92
BsuRI GGCC 5 cut(s) 78, 88, 288, 1007, 1257
BsuTUI ATCGAT 1 cut(s) 92
BtgI CCRYGG 2 cut(s) 261, 357
BtsCI GGATG 5 cut(s) 232, 406, 524, 722, 726
BtsIMutI CAGTG 1 cut(s) 1272
Cac8I GCNNGC 6 cut(s) 120, 276, 714, 765, 1191, 1195
Cfr10I RCCGGY 2 cut(s) 71, 1207
Cfr13I GGNCC 2 cut(s) 168, 1256
ClaI ATCGAT 1 cut(s) 92
CseI GACGC 1 cut(s) 494
Csp6I GTAC 2 cut(s) 374, 792
CspAI ACCGGT 1 cut(s) 1207
CviAII CATG 3 cut(s) 262, 358, 904
CviQI GTAC 2 cut(s) 374, 792
DpnI GATC 4 cut(s) 444, 612, 863, 1092
DpnII GATC 4 cut(s) 442, 610, 861, 1090
DraIII CACNNNGTG 1 cut(s) 581
EaeI YGGCCR 1 cut(s) 86
Eam1104I CTCTTC 2 cut(s) 215, 960
EarI CTCTTC 2 cut(s) 215, 960
Ecl136II GAGCTC 1 cut(s) 970
Eco130I CCWWGG 3 cut(s) 261, 357, 1008
Eco24I GRGCYC 1 cut(s) 972
Eco47I GGWCC 1 cut(s) 168
Eco53kI GAGCTC 1 cut(s) 970
Eco57I CTGAAG 4 cut(s) 77, 239, 771, 1092
Eco88I CYCGRG 2 cut(s) 717, 884
EcoICRI GAGCTC 1 cut(s) 970
EcoO109I RGGNCCY 1 cut(s) 168
EcoRII CCWGG 3 cut(s) 857, 864, 1002
EcoT14I CCWWGG 3 cut(s) 261, 357, 1008
EcoT38I GRGCYC 1 cut(s) 972
ErhI CCWWGG 3 cut(s) 261, 357, 1008
FaeI CATG 3 cut(s) 265, 361, 907
FatI CATG 3 cut(s) 261, 357, 903
FauI CCCGC 1 cut(s) 158
FbaI TGATCA 1 cut(s) 610
FblI GTMKAC 1 cut(s) 937
Fnu4HI GCNGC 5 cut(s) 289, 423, 458, 522, 768
FokI GGATG 5 cut(s) 219, 413, 511, 709, 713
FriOI GRGCYC 1 cut(s) 972
Fsp4HI GCNGC 5 cut(s) 289, 423, 458, 522, 768
FspBI CTAG 3 cut(s) 284, 777, 818
GluI GCNGC 5 cut(s) 289, 423, 458, 522, 768
HaeIII GGCC 5 cut(s) 78, 88, 288, 1007, 1257
HapII CCGG 3 cut(s) 72, 271, 1208
HgaI GACGC 1 cut(s) 494
Hin1II CATG 3 cut(s) 265, 361, 907
HindIII AAGCTT 1 cut(s) 944
HinfI GANTC 6 cut(s) 177, 266, 668, 978, 1022, 1158
HpaII CCGG 3 cut(s) 72, 271, 1208
HphI GGTGA 3 cut(s) 19, 142, 239
Hpy166II GTNNAC 2 cut(s) 584, 938
Hpy188I TCNGA 4 cut(s) 615, 655, 739, 974
Hpy188III TCNNGA 4 cut(s) 174, 469, 777, 886
Hpy8I GTNNAC 2 cut(s) 584, 938
HpyAV CCTTC 3 cut(s) 40, 52, 260
HpyCH4III ACNGT 6 cut(s) 9, 37, 373, 378, 501, 1267
HpyCH4IV ACGT 1 cut(s) 475
HpyF10VI GCNNNNNNNGC 5 cut(s) 94, 203, 431, 463, 1130
HpySE526I ACGT 1 cut(s) 475
Hsp92II CATG 3 cut(s) 265, 361, 907
KpnI GGTACC 1 cut(s) 795
Ksp22I TGATCA 1 cut(s) 610
Kzo9I GATC 4 cut(s) 442, 610, 861, 1090
LguI GCTCTTC 1 cut(s) 960
LmnI GCTCC 4 cut(s) 361, 709, 955, 975
Lsp1109I GCAGC 4 cut(s) 434, 444, 533, 779
LweI GCATC 7 cut(s) 84, 287, 409, 508, 533, 731, 885
MaeI CTAG 3 cut(s) 284, 777, 818
MaeII ACGT 1 cut(s) 475
MaeIII GTNAC 4 cut(s) 100, 657, 1014, 1261
MalI GATC 4 cut(s) 444, 612, 863, 1092
MboI GATC 4 cut(s) 442, 610, 861, 1090
MfeI CAATTG 1 cut(s) 594
MflI RGATCY 2 cut(s) 442, 861
MhlI GDGCHC 2 cut(s) 586, 972
MluCI AATT 8 cut(s) 339, 346, 594, 630, 698, 749, 808, 923
MlyI GAGTC 3 cut(s) 677, 1016, 1152
MmeI TCCRAC 1 cut(s) 1186
MroXI GAANNNNTTC 1 cut(s) 784
MseI TTAA 4 cut(s) 342, 950, 992, 1239
MslI CAYNNNNRTG 2 cut(s) 1032, 1241
MspA1I CMGCKG 2 cut(s) 457, 1133
MspI CCGG 3 cut(s) 72, 271, 1208
MspR9I CCNGG 4 cut(s) 271, 859, 866, 1004
MunI CAATTG 1 cut(s) 594
Mva1269I GAATGC 1 cut(s) 325
MvaI CCWGG 3 cut(s) 859, 866, 1004
MwoI GCNNNNNNNGC 5 cut(s) 94, 203, 431, 463, 1130
NciI CCSGG 1 cut(s) 271
NcoI CCATGG 2 cut(s) 261, 357
NdeII GATC 4 cut(s) 442, 610, 861, 1090
NlaIII CATG 3 cut(s) 265, 361, 907
NlaIV GGNNCC 3 cut(s) 169, 793, 863
NmuCI GTSAC 1 cut(s) 100
PaeR7I CTCGAG 2 cut(s) 717, 884
PciSI GCTCTTC 1 cut(s) 960
PcsI WCGNNNNNNNCGW 1 cut(s) 115
PctI GAATGC 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 784
PfeI GAWTC 3 cut(s) 177, 266, 978
PfoI TCCNGGA 1 cut(s) 864
PinAI ACCGGT 1 cut(s) 1207
PkrI GCNGC 5 cut(s) 290, 424, 459, 523, 769
PleI GAGTC 3 cut(s) 676, 1016, 1152
PpsI GAGTC 3 cut(s) 676, 1016, 1152
PpuMI RGGWCCY 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 972
Psp5II RGGWCCY 1 cut(s) 168
Psp6I CCWGG 3 cut(s) 857, 864, 1002
PspGI CCWGG 3 cut(s) 857, 864, 1002
PspN4I GGNNCC 3 cut(s) 169, 793, 863
PspPI GGNCC 2 cut(s) 168, 1256
PspPPI RGGWCCY 1 cut(s) 168
PspXI VCTCGAGB 1 cut(s) 717
PsuI RGATCY 2 cut(s) 442, 861
PvuII CAGCTG 2 cut(s) 457, 1133
RsaI GTAC 2 cut(s) 375, 793
RsaNI GTAC 2 cut(s) 374, 792
RseI CAYNNNNRTG 2 cut(s) 1032, 1241
SacI GAGCTC 1 cut(s) 972
SapI GCTCTTC 1 cut(s) 960
SaqAI TTAA 4 cut(s) 342, 950, 992, 1239
SatI GCNGC 5 cut(s) 289, 423, 458, 522, 768
Sau3AI GATC 4 cut(s) 442, 610, 861, 1090
Sau96I GGNCC 2 cut(s) 168, 1256
SchI GAGTC 3 cut(s) 677, 1016, 1152
ScrFI CCNGG 4 cut(s) 271, 859, 866, 1004
SduI GDGCHC 2 cut(s) 586, 972
SfaNI GCATC 7 cut(s) 84, 287, 409, 508, 533, 731, 885
SfcI CTRYAG 1 cut(s) 909
Sfr274I CTCGAG 2 cut(s) 717, 884
SgrAI CRCCGGYG 1 cut(s) 71
SinI GGWCC 1 cut(s) 168
SlaI CTCGAG 2 cut(s) 717, 884
SmiMI CAYNNNNRTG 2 cut(s) 1032, 1241
SmlI CTYRAG 5 cut(s) 395, 467, 717, 884, 1173
SmoI CTYRAG 5 cut(s) 395, 467, 717, 884, 1173
Sse9I AATT 8 cut(s) 339, 346, 594, 630, 698, 749, 808, 923
SsiI CCGC 2 cut(s) 165, 289
SspMI CTAG 3 cut(s) 284, 777, 818
SstI GAGCTC 1 cut(s) 972
StyD4I CCNGG 4 cut(s) 269, 857, 864, 1002
StyI CCWWGG 3 cut(s) 261, 357, 1008
TaaI ACNGT 6 cut(s) 9, 37, 373, 378, 501, 1267
TaiI ACGT 1 cut(s) 478
TaqI TCGA 7 cut(s) 92, 109, 180, 505, 718, 885, 1020
TaqII GACCGA 1 cut(s) 127
TasI AATT 8 cut(s) 339, 346, 594, 630, 698, 749, 808, 923
TauI GCSGC 1 cut(s) 291
TfiI GAWTC 3 cut(s) 177, 266, 978
Tru1I TTAA 4 cut(s) 342, 950, 992, 1239
Tru9I TTAA 4 cut(s) 342, 950, 992, 1239
TscAI CASTG 1 cut(s) 1272
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 4 cut(s) 422, 457, 521, 767
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 2 cut(s) 978, 1259
TspRI CASTG 1 cut(s) 1272
VneI GTGCAC 1 cut(s) 582
VpaK11BI GGWCC 1 cut(s) 168
XapI RAATTY 1 cut(s) 346
XbaI TCTAGA 1 cut(s) 776
XhoI CTCGAG 2 cut(s) 717, 884
XmiI GTMKAC 1 cut(s) 937
XmnI GAANNNNTTC 1 cut(s) 784
XspI CTAG 3 cut(s) 284, 777, 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.