Rh5CG477500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004466
Physical Location & Seq
Reverse (-)
66648999 .. 66653599
4601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG477500.1

Sequence Viewer

Length: 1179 bp
ATGAGAAAATCGGAGAGCGCAAATCGACTCTCTGAGAGCGATGTTAGTACTTTAGTTTCTCAGATAAGAGACTTGGATAGGAAGAATGCGGAACTGGAAGAACAAAACAAAAATTTGGCTTCCATGCTTGAAACAAAGGAAGCCGGGAGTAATGTGCTGCAGAAACGTTTGAATGATCTGGAGCAAAATACTGTACCGTCTTTGAGGAAAGCTCTCAAGGATGTCGCAATGGAGAAAGATGCAGCAGTTGTTGCACGGGAGGATCTCTCTGCCCAGCTGCGTATGCTCAAGAAACGTCTAAAGGATGCAGAAGAAGAACAATATCGAGCTGAGGAAGATGCAGCATCCCTGAGAGCAGAACTCAATATGATACAGCAACAAACAATGAATGGCTCACTTGGTGCACTAAACTCAATTGCTAATCCACCTGATCAGATAAAAACATTAGAAATTGAGTTAGCTAACATAAAGTCCGAGTTACAGCGCGAGTCAATGTTTAGACAGCAAGAACGACAACAATTAGGAGAGGAGCAGGCTCGAGCATCCATCCTTACATCTGAGAAGCAAGAATTGGAAGAAAAACTTGCAGCTTTGTCTAGAAAGTCCTCAGAAGTGTCAGACAAAGTGGCCAGCATGGGATTTTCATTAGAAGACAAGGAGGTACTCGAGAAGCAGATGCATGACATGGCTGTAGTGATTGAAAAATTGGAAAGCAGTAGACAAAAGCTTTTGATGGAGATTGATTCCCAATCTTCGGAGATAGAAAGGCTTTTTGAGGAAAACTCTAATTTATCTAGTTCTCATCAGGAGGCTATGAGCATGGCTTTGCACTGGGAGAATCAGGTGAAAGACTGTCTTAGGCAAAATGAAGAGCTCCGAGGAATCTTAGATAAGTTAAGAACTGACCAGGCCAAGGGGTTGCTCGACTCCCATAGCAATGGTTCTAACAAGACTGGTTTAGCTGAATACACACCTGAAGTTCTCTCTATTAAGGATCAACTTGCAAAAGAACAGAGCAAAGCAGAGGCATTATCAGCTGAGGTATTACAGCTCTCAGCAAGACTCCAACAAACCACTCAAGCATACAATGGTCTTGCACGCCTCTATAAACCGGTGTTGCGAAACATAGAAAGCAGTCTCATTAAGATGAAACAAGATGGCCCTGTGACAGTGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

392

Amino Acids

44.24

Weight (kDa)

5.2

Isoelectric Point (pI)

60.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 718
AccII CGCG 1 cut(s) 486
AciI CCGC 2 cut(s) 89, 1174
AclI AACGTT 1 cut(s) 166
AclWI GGATC 2 cut(s) 270, 1002
AcoI YGGCCR 1 cut(s) 627
AcsI RAATTY 1 cut(s) 112
AcuI CTGAAG 1 cut(s) 996
AdeI CACNNNGTG 1 cut(s) 401
AfaI GTAC 3 cut(s) 49, 195, 663
AfiI CCNNNNNNNGG 2 cut(s) 754, 913
AgeI ACCGGT 1 cut(s) 1111
AgsI TTSAA 3 cut(s) 131, 172, 701
AjnI CCWGG 1 cut(s) 906
AjuI GAANNNNNNNTTGG 2 cut(s) 554, 586
Alw21I GWGCWC 2 cut(s) 406, 876
Alw26I GTCTC 2 cut(s) 63, 1142
Alw44I GTGCAC 1 cut(s) 402
AlwI GGATC 2 cut(s) 270, 1002
Ama87I CYCGRG 2 cut(s) 537, 665
AoxI GGCC 3 cut(s) 627, 909, 1159
ApaLI GTGCAC 1 cut(s) 402
ApeKI GCWGC 5 cut(s) 157, 242, 277, 341, 587
ApoI RAATTY 1 cut(s) 112
AsiGI ACCGGT 1 cut(s) 1111
AspLEI GCGC 2 cut(s) 20, 486
AspS9I GGNCC 1 cut(s) 1160
AsuC2I CCSGG 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 856
AvaI CYCGRG 2 cut(s) 537, 665
BaeGI GKGCMC 1 cut(s) 406
BalI TGGCCA 1 cut(s) 629
BanII GRGCYC 1 cut(s) 876
BbsI GAAGAC 1 cut(s) 657
Bbv12I GWGCWC 2 cut(s) 406, 876
BbvCI CCTCAGC 2 cut(s) 330, 1038
BbvI GCAGC 5 cut(s) 144, 254, 264, 353, 599
BccI CCATC 3 cut(s) 554, 727, 1151
BciT130I CCWGG 1 cut(s) 908
BclI TGATCA 1 cut(s) 430
BcnI CCSGG 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 63, 1142
BfaI CTAG 2 cut(s) 597, 795
BfmI CTRYAG 2 cut(s) 158, 690
BisI GCNGC 5 cut(s) 158, 243, 278, 342, 588
BlsI GCNGC 5 cut(s) 159, 244, 279, 343, 589
BmcAI AGTACT 1 cut(s) 49
Bme1390I CCNGG 2 cut(s) 145, 908
BmeT110I CYCGRG 2 cut(s) 537, 665
BmgT120I GGNCC 1 cut(s) 1160
BmrFI CCNGG 2 cut(s) 145, 908
BmrI ACTGGG 1 cut(s) 841
BmsI GCATC 6 cut(s) 229, 295, 328, 353, 551, 666
BmuI ACTGGG 1 cut(s) 841
BpiI GAAGAC 1 cut(s) 657
BplI GAGNNNNNCTC 8 cut(s) 196, 228, 251, 283, 345, 377, 767, 799
BpmI CTGGAG 1 cut(s) 200
Bpu10I CCTNAGC 2 cut(s) 330, 1038
BpuEI CTTGAG 3 cut(s) 200, 272, 1062
BpuMI CCSGG 1 cut(s) 145
BsaJI CCNNGG 2 cut(s) 877, 912
BsaWI WCCGGW 1 cut(s) 1111
Bsc4I CCNNNNNNNGG 2 cut(s) 754, 913
Bse118I RCCGGY 1 cut(s) 1111
Bse1I ACTGG 3 cut(s) 99, 836, 958
Bse3DI GCAATG 2 cut(s) 234, 943
BseBI CCWGG 1 cut(s) 908
BseDI CCNNGG 2 cut(s) 877, 912
BseGI GGATG 5 cut(s) 226, 310, 344, 542, 546
BseLI CCNNNNNNNGG 2 cut(s) 754, 913
BseMI GCAATG 2 cut(s) 234, 943
BseMII CTCAG 8 cut(s) 24, 74, 321, 341, 549, 621, 1029, 1068
BseNI ACTGG 3 cut(s) 99, 836, 958
BseRI GAGGAG 1 cut(s) 542
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 5 cut(s) 144, 254, 264, 353, 599
BseYI CCCAGC 1 cut(s) 273
Bsh1236I CGCG 1 cut(s) 486
BshFI GGCC 3 cut(s) 629, 911, 1161
BshTI ACCGGT 1 cut(s) 1111
BsiHKAI GWGCWC 2 cut(s) 406, 876
BsiHKCI CYCGRG 2 cut(s) 537, 665
BsiSI CCGG 2 cut(s) 144, 1112
BslI CCNNNNNNNGG 2 cut(s) 754, 913
BsmAI GTCTC 2 cut(s) 63, 1142
BsmI GAATGC 1 cut(s) 91
BsnI GGCC 3 cut(s) 629, 911, 1161
BsoBI CYCGRG 2 cut(s) 537, 665
Bsp1286I GDGCHC 2 cut(s) 406, 876
Bsp143I GATC 4 cut(s) 175, 262, 430, 994
BspACI CCGC 2 cut(s) 89, 1174
BspANI GGCC 3 cut(s) 629, 911, 1161
BspCNI CTCAG 8 cut(s) 25, 73, 322, 342, 550, 620, 1030, 1067
BspFNI CGCG 1 cut(s) 486
BspMAI CTGCAG 1 cut(s) 162
BspPI GGATC 2 cut(s) 270, 1002
BspQI GCTCTTC 1 cut(s) 864
BsrDI GCAATG 2 cut(s) 234, 943
BsrFI RCCGGY 1 cut(s) 1111
BsrI ACTGG 3 cut(s) 99, 836, 958
BssAI RCCGGY 1 cut(s) 1111
BssECI CCNNGG 2 cut(s) 877, 912
BssMI GATC 4 cut(s) 175, 262, 430, 994
BssT1I CCWWGG 1 cut(s) 912
Bst2UI CCWGG 1 cut(s) 908
Bst4CI ACNGT 4 cut(s) 193, 198, 854, 1171
Bst6I CTCTTC 1 cut(s) 864
BstAPI GCANNNNNTGC 1 cut(s) 251
BstC8I GCNNGC 3 cut(s) 534, 631, 1099
BstF5I GGATG 5 cut(s) 226, 310, 344, 542, 546
BstFNI CGCG 1 cut(s) 486
BstHHI GCGC 2 cut(s) 20, 486
BstKTI GATC 4 cut(s) 178, 265, 433, 997
BstMAI GTCTC 2 cut(s) 63, 1142
BstMBI GATC 4 cut(s) 175, 262, 430, 994
BstMWI GCNNNNNNNGC 3 cut(s) 251, 283, 1034
BstNI CCWGG 1 cut(s) 908
BstSCI CCNGG 2 cut(s) 143, 906
BstSFI CTRYAG 2 cut(s) 158, 690
BstSLI GKGCMC 1 cut(s) 406
BstUI CGCG 1 cut(s) 486
BstV1I GCAGC 5 cut(s) 144, 254, 264, 353, 599
BstV2I GAAGAC 1 cut(s) 657
BstX2I RGATCY 1 cut(s) 262
BstXI CCANNNNNNTGG 1 cut(s) 938
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 3 cut(s) 629, 911, 1161
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 5 cut(s) 226, 310, 344, 542, 546
BtsIMutI CAGTG 2 cut(s) 829, 1176
Cac8I GCNNGC 3 cut(s) 534, 631, 1099
CfoI GCGC 2 cut(s) 20, 486
Cfr10I RCCGGY 1 cut(s) 1111
Cfr13I GGNCC 1 cut(s) 1160
Csp6I GTAC 3 cut(s) 48, 194, 662
CspAI ACCGGT 1 cut(s) 1111
CviAII CATG 5 cut(s) 124, 634, 680, 685, 820
CviQI GTAC 3 cut(s) 48, 194, 662
DpnI GATC 4 cut(s) 177, 264, 432, 996
DpnII GATC 4 cut(s) 175, 262, 430, 994
DraIII CACNNNGTG 1 cut(s) 401
EaeI YGGCCR 1 cut(s) 627
Eam1104I CTCTTC 1 cut(s) 864
EarI CTCTTC 1 cut(s) 864
Ecl136II GAGCTC 1 cut(s) 874
Eco130I CCWWGG 1 cut(s) 912
Eco24I GRGCYC 1 cut(s) 876
Eco53kI GAGCTC 1 cut(s) 874
Eco57I CTGAAG 1 cut(s) 996
Eco88I CYCGRG 2 cut(s) 537, 665
EcoICRI GAGCTC 1 cut(s) 874
EcoRII CCWGG 1 cut(s) 906
EcoT14I CCWWGG 1 cut(s) 912
EcoT22I ATGCAT 1 cut(s) 681
EcoT38I GRGCYC 1 cut(s) 876
ErhI CCWWGG 1 cut(s) 912
FaeI CATG 5 cut(s) 127, 637, 683, 688, 823
FalI AAGNNNNNCTT 4 cut(s) 567, 599, 840, 872
FatI CATG 5 cut(s) 123, 633, 679, 684, 819
FbaI TGATCA 1 cut(s) 430
FblI GTMKAC 1 cut(s) 718
Fnu4HI GCNGC 5 cut(s) 158, 243, 278, 342, 588
FokI GGATG 5 cut(s) 233, 317, 331, 529, 533
FriOI GRGCYC 1 cut(s) 876
Fsp4HI GCNGC 5 cut(s) 158, 243, 278, 342, 588
FspBI CTAG 2 cut(s) 597, 795
GlaI GCGC 2 cut(s) 19, 485
GluI GCNGC 5 cut(s) 158, 243, 278, 342, 588
GsaI CCCAGC 1 cut(s) 277
GsuI CTGGAG 1 cut(s) 200
HaeIII GGCC 3 cut(s) 629, 911, 1161
HapII CCGG 2 cut(s) 144, 1112
HhaI GCGC 2 cut(s) 20, 486
Hin1II CATG 5 cut(s) 127, 637, 683, 688, 823
Hin6I GCGC 2 cut(s) 18, 484
HinP1I GCGC 2 cut(s) 18, 484
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 7 cut(s) 27, 488, 743, 838, 882, 926, 1062
HpaII CCGG 2 cut(s) 144, 1112
HphI GGTGA 1 cut(s) 856
Hpy166II GTNNAC 2 cut(s) 404, 719
Hpy188III TCNNGA 5 cut(s) 179, 289, 597, 667, 806
Hpy8I GTNNAC 2 cut(s) 404, 719
HpyCH4III ACNGT 4 cut(s) 193, 198, 854, 1171
HpyCH4IV ACGT 2 cut(s) 166, 295
HpyF10VI GCNNNNNNNGC 3 cut(s) 251, 283, 1034
HpySE526I ACGT 2 cut(s) 166, 295
Hsp92II CATG 5 cut(s) 127, 637, 683, 688, 823
HspAI GCGC 2 cut(s) 18, 484
Ksp22I TGATCA 1 cut(s) 430
Kzo9I GATC 4 cut(s) 175, 262, 430, 994
LguI GCTCTTC 1 cut(s) 864
LmnI GCTCC 3 cut(s) 181, 529, 879
Lsp1109I GCAGC 5 cut(s) 144, 254, 264, 353, 599
LweI GCATC 6 cut(s) 229, 295, 328, 353, 551, 666
MaeI CTAG 2 cut(s) 597, 795
MaeII ACGT 2 cut(s) 166, 295
MaeIII GTNAC 2 cut(s) 477, 1165
MalI GATC 4 cut(s) 177, 264, 432, 996
MboI GATC 4 cut(s) 175, 262, 430, 994
MboII GAAGA 9 cut(s) 94, 110, 323, 326, 347, 587, 662, 744, 881
MfeI CAATTG 1 cut(s) 414
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 2 cut(s) 406, 876
MlsI TGGCCA 1 cut(s) 629
MluCI AATT 7 cut(s) 112, 414, 450, 518, 569, 704, 787
MluNI TGGCCA 1 cut(s) 629
MlyI GAGTC 4 cut(s) 21, 497, 920, 1056
MmeI TCCRAC 1 cut(s) 1090
Mox20I TGGCCA 1 cut(s) 629
Mph1103I ATGCAT 1 cut(s) 681
MscI TGGCCA 1 cut(s) 629
MseI TTAA 3 cut(s) 896, 990, 1143
MslI CAYNNNNRTG 2 cut(s) 936, 1145
Msp20I TGGCCA 1 cut(s) 629
MspA1I CMGCKG 2 cut(s) 277, 1037
MspI CCGG 2 cut(s) 144, 1112
MspR9I CCNGG 2 cut(s) 145, 908
MunI CAATTG 1 cut(s) 414
Mva1269I GAATGC 1 cut(s) 91
MvaI CCWGG 1 cut(s) 908
MvnI CGCG 1 cut(s) 486
MwoI GCNNNNNNNGC 3 cut(s) 251, 283, 1034
NciI CCSGG 1 cut(s) 145
NdeII GATC 4 cut(s) 175, 262, 430, 994
NlaIII CATG 5 cut(s) 127, 637, 683, 688, 823
NmuCI GTSAC 1 cut(s) 1165
NsiI ATGCAT 1 cut(s) 681
PaeR7I CTCGAG 2 cut(s) 537, 665
PciSI GCTCTTC 1 cut(s) 864
PctI GAATGC 1 cut(s) 91
PfeI GAWTC 3 cut(s) 743, 838, 882
PinAI ACCGGT 1 cut(s) 1111
PkrI GCNGC 5 cut(s) 159, 244, 279, 343, 589
PleI GAGTC 4 cut(s) 21, 496, 920, 1056
PpsI GAGTC 4 cut(s) 21, 496, 920, 1056
Psp124BI GAGCTC 1 cut(s) 876
Psp1406I AACGTT 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 906
PspFI CCCAGC 1 cut(s) 273
PspGI CCWGG 1 cut(s) 906
PspPI GGNCC 1 cut(s) 1160
PspXI VCTCGAGB 1 cut(s) 537
PstI CTGCAG 1 cut(s) 162
PsuI RGATCY 1 cut(s) 262
PvuII CAGCTG 2 cut(s) 277, 1037
RsaI GTAC 3 cut(s) 49, 195, 663
RsaNI GTAC 3 cut(s) 48, 194, 662
RseI CAYNNNNRTG 2 cut(s) 936, 1145
SacI GAGCTC 1 cut(s) 876
SapI GCTCTTC 1 cut(s) 864
SaqAI TTAA 3 cut(s) 896, 990, 1143
SatI GCNGC 5 cut(s) 158, 243, 278, 342, 588
Sau3AI GATC 4 cut(s) 175, 262, 430, 994
Sau96I GGNCC 1 cut(s) 1160
ScaI AGTACT 1 cut(s) 49
SchI GAGTC 4 cut(s) 21, 497, 920, 1056
ScrFI CCNGG 2 cut(s) 145, 908
SduI GDGCHC 2 cut(s) 406, 876
SfaNI GCATC 6 cut(s) 229, 295, 328, 353, 551, 666
SfcI CTRYAG 2 cut(s) 158, 690
Sfr274I CTCGAG 2 cut(s) 537, 665
SlaI CTCGAG 2 cut(s) 537, 665
SmiMI CAYNNNNRTG 2 cut(s) 936, 1145
SmlI CTYRAG 5 cut(s) 215, 287, 537, 665, 1077
SmoI CTYRAG 5 cut(s) 215, 287, 537, 665, 1077
Sse9I AATT 7 cut(s) 112, 414, 450, 518, 569, 704, 787
SsiI CCGC 2 cut(s) 89, 1174
SspMI CTAG 2 cut(s) 597, 795
SstI GAGCTC 1 cut(s) 876
StyD4I CCNGG 2 cut(s) 143, 906
StyI CCWWGG 1 cut(s) 912
TaaI ACNGT 4 cut(s) 193, 198, 854, 1171
TaiI ACGT 2 cut(s) 169, 298
TaqI TCGA 5 cut(s) 25, 325, 538, 666, 924
TasI AATT 7 cut(s) 112, 414, 450, 518, 569, 704, 787
TatI WGTACW 1 cut(s) 47
TfiI GAWTC 3 cut(s) 743, 838, 882
Tru1I TTAA 3 cut(s) 896, 990, 1143
Tru9I TTAA 3 cut(s) 896, 990, 1143
TscAI CASTG 2 cut(s) 836, 1176
TseFI GTSAC 1 cut(s) 1165
TseI GCWGC 5 cut(s) 157, 242, 277, 341, 587
Tsp45I GTSAC 1 cut(s) 1165
TspDTI ATGAA 4 cut(s) 401, 633, 882, 1163
TspRI CASTG 2 cut(s) 836, 1176
VneI GTGCAC 1 cut(s) 402
XapI RAATTY 1 cut(s) 112
XbaI TCTAGA 1 cut(s) 596
XhoI CTCGAG 2 cut(s) 537, 665
XmiI GTMKAC 1 cut(s) 718
XspI CTAG 2 cut(s) 597, 795
ZrmI AGTACT 1 cut(s) 49
Zsp2I ATGCAT 1 cut(s) 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.