Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004466

Physical Location & Seq

Genomic Coordinates Reverse (-)

27399191 .. 27402242

Gene Structure 3052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGAGAAAGATGCGGCAGTTGTTGCACGGGAGGATCTCTCCGCCCAGCTGCGTATGCTAAAGAAGCGTCTGAAGGACGCAGAAGAAGAACAGTATCGAGCTGAGGAAGATGCAGCATCCCTGAGAGCTGAGCTGAATATGAAACAACAACAAACAATGAGTGGCTCACTTGGTGCACTAAACTCAAGTGCTAATCCACCTGATCAGATACAGGCATTAGAAAACGAGTTAGCTAATTTAAAGTCCGAGTTACAGCAAGAATCAATGTTGAGACAGCAAGAACGACAGCAACTAGCAGAGGAGCAAGCTCGAGCATCCATACTCACATCTGAGAATCAAGAATTAGAAGAAAAACTTGCAGCTTTGTCTAGAAAGTCTTCAGAATCAGACAGAGTGGCCAGCAAGGGATTTTCATTTGAAGACAAAGAGATACTTGAGAAGCAGATGCATGACATGGCTGTAGTGATTGAGAAATTGGAAAGCAGTAGACAAAAGCTTTTAATGGAGAGTGATTCCCAATCTTCCGAGATAGAAAGGCTTTTTGAGGAGAACTCTAATTTTTCTAGTTCTCATCAGGAGGCTATGAGCATAGCTGTCCACTGGGAGAATCAGGTGAAAGACTGTCTTAAGCAAAATGAAGAGCTCCGAGGAATCTTAGATAAGTTAAGGACTGACCAGGCTAAGGGTTTGCTTGACTCCCATAACAATGGCTCTAACAAGACTGGTTCAGCTGAATATACAACTGAAGTTCTCTCTATCAAGGATCAACTTGCAAAAGAACAGAGTAAAGCAGAGGCATTATCGGCTGAGGAATTACAGCTCTCAGCAAGACTCCAACAGACCACTCAAGCATATAATGGGCTCGCACGCCTCTATAAACCGGTCTTGAGAAACATAGAAAGCAGCCTCATTAAGATGAAACAAGATGGCCCTGTGACGGTGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

316

Amino Acids

35.43

Weight (kDa)

4.96

Isoelectric Point (pI)

66.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59210 AT5G59210
fragaria_vesca	FvH4_2g37740 FvH4_3g37100 FvH4_3g37100
malus_domestica	MD03G1084900.v1.1 MD11G1092400.v1.1
prunus_persica	Prupe.6G068200_v2.0.a1
pyrus_communis	pycom11g07770
rosa_chinensis	RchiOBHm_Chr5g0066731 RchiOBHm_Chr5g0066821
rosa_laevigata	RLG00000035876
rosa_multiflora	Rmu_sc0000605.1_g000050
rosa_roxburghii	Rroxscaffold_1G00014280 Rroxscaffold_1G00014310 Rroxscaffold_1G00014340 Rroxscaffold_1G00014360 Rroxscaffold_1G00014490 Rroxscaffold_1G00014520
rosa_rugosa	Rorug05G0379000 Rorug05G0379000
rosa_samantha	Rh5AG438200 Rh5AG438400 Rh5BG454000 Rh5BG454600 Rh5BG455400 Rh5CG476300 Rh5CG476900 Rh5CG477500 Rh5DG469100 Rh5DG470200
rosa_wichuraiana	Rw5G040960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	487
AciI	CCGC	2 cut(s)	14, 42
AclWI	GGATC	2 cut(s)	42, 771
AcoI	YGGCCR	1 cut(s)	396
AcuI	CTGAAG	3 cut(s)	92, 363, 765
AdeI	CACNNNGTG	1 cut(s)	173
AfiI	CCNNNNNNNGG	2 cut(s)	682, 937
AflII	CTTAAG	1 cut(s)	626
AgeI	ACCGGT	1 cut(s)	880
AgsI	TTSAA	1 cut(s)	419
AjnI	CCWGG	1 cut(s)	675
Alw21I	GWGCWC	2 cut(s)	178, 645
Alw26I	GTCTC	1 cut(s)	265
Alw44I	GTGCAC	1 cut(s)	174
AlwI	GGATC	2 cut(s)	42, 771
Ama87I	CYCGRG	1 cut(s)	309
AoxI	GGCC	2 cut(s)	396, 928
ApaLI	GTGCAC	1 cut(s)	174
ApeKI	GCWGC	4 cut(s)	49, 113, 359, 903
AsiGI	ACCGGT	1 cut(s)	880
Asp700I	GAANNNNTTC	1 cut(s)	376
AspS9I	GGNCC	1 cut(s)	929
AsuHPI	GGTGA	1 cut(s)	625
AvaI	CYCGRG	1 cut(s)	309
BaeGI	GKGCMC	1 cut(s)	178
BalI	TGGCCA	1 cut(s)	398
BanII	GRGCYC	2 cut(s)	645, 864
BbsI	GAAGAC	2 cut(s)	369, 426
Bbv12I	GWGCWC	2 cut(s)	178, 645
BbvCI	CCTCAGC	2 cut(s)	102, 807
BbvI	GCAGC	4 cut(s)	36, 125, 371, 915
BccI	CCATC	1 cut(s)	920
BciT130I	CCWGG	1 cut(s)	677
BclI	TGATCA	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	3 cut(s)	293, 369, 564
BfmI	CTRYAG	1 cut(s)	459
BfrI	CTTAAG	1 cut(s)	626
BisI	GCNGC	5 cut(s)	15, 50, 114, 360, 904
BlpI	GCTNAGC	1 cut(s)	129
BlsI	GCNGC	5 cut(s)	16, 51, 115, 361, 905
Bme1390I	CCNGG	1 cut(s)	677
BmeT110I	CYCGRG	1 cut(s)	309
BmgT120I	GGNCC	1 cut(s)	929
BmrFI	CCNGG	1 cut(s)	677
BmrI	ACTGGG	1 cut(s)	610
BmsI	GCATC	4 cut(s)	100, 125, 323, 435
BmuI	ACTGGG	1 cut(s)	610
BpiI	GAAGAC	2 cut(s)	369, 426
BplI	GAGNNNNNCTC	4 cut(s)	23, 55, 536, 568
Bpu10I	CCTNAGC	3 cut(s)	102, 681, 807
Bpu1102I	GCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	4 cut(s)	169, 455, 831, 907
BsaJI	CCNNGG	1 cut(s)	646
BsaWI	WCCGGW	1 cut(s)	880
Bsc4I	CCNNNNNNNGG	2 cut(s)	682, 937
Bse118I	RCCGGY	1 cut(s)	880
Bse1I	ACTGG	2 cut(s)	605, 727
BseBI	CCWGG	1 cut(s)	677
BseDI	CCNNGG	1 cut(s)	646
BseGI	GGATG	2 cut(s)	116, 314
BseLI	CCNNNNNNNGG	2 cut(s)	682, 937
BseMII	CTCAG	6 cut(s)	93, 113, 120, 321, 798, 837
BseNI	ACTGG	2 cut(s)	605, 727
BseRI	GAGGAG	2 cut(s)	314, 560
BseSI	GKGCMC	1 cut(s)	178
BseXI	GCAGC	4 cut(s)	36, 125, 371, 915
BseYI	CCCAGC	1 cut(s)	45
BshFI	GGCC	2 cut(s)	398, 930
BshTI	ACCGGT	1 cut(s)	880
BsiHKAI	GWGCWC	2 cut(s)	178, 645
BsiHKCI	CYCGRG	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	881
BslI	CCNNNNNNNGG	2 cut(s)	682, 937
BsmAI	GTCTC	1 cut(s)	265
BsnI	GGCC	2 cut(s)	398, 930
BsoBI	CYCGRG	1 cut(s)	309
Bsp1286I	GDGCHC	3 cut(s)	178, 645, 864
Bsp143I	GATC	3 cut(s)	34, 202, 763
Bsp1720I	GCTNAGC	1 cut(s)	129
BspACI	CCGC	2 cut(s)	14, 42
BspANI	GGCC	2 cut(s)	398, 930
BspCNI	CTCAG	6 cut(s)	94, 114, 121, 322, 799, 836
BspPI	GGATC	2 cut(s)	42, 771
BspQI	GCTCTTC	1 cut(s)	633
BspTI	CTTAAG	1 cut(s)	626
BsrFI	RCCGGY	1 cut(s)	880
BsrI	ACTGG	2 cut(s)	605, 727
BssAI	RCCGGY	1 cut(s)	880
BssECI	CCNNGG	1 cut(s)	646
BssMI	GATC	3 cut(s)	34, 202, 763
Bst2UI	CCWGG	1 cut(s)	677
Bst4CI	ACNGT	3 cut(s)	93, 623, 940
Bst6I	CTCTTC	1 cut(s)	633
BstAFI	CTTAAG	1 cut(s)	626
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstC8I	GCNNGC	4 cut(s)	306, 400, 864, 868
BstDEI	CTNAG	8 cut(s)	102, 122, 129, 330, 655, 681, 807, 823
BstF5I	GGATG	2 cut(s)	116, 314
BstKTI	GATC	3 cut(s)	37, 205, 766
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	3 cut(s)	34, 202, 763
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 55, 64, 803
BstNI	CCWGG	1 cut(s)	677
BstSCI	CCNGG	1 cut(s)	675
BstSFI	CTRYAG	1 cut(s)	459
BstSLI	GKGCMC	1 cut(s)	178
BstV1I	GCAGC	4 cut(s)	36, 125, 371, 915
BstV2I	GAAGAC	2 cut(s)	369, 426
BstX2I	RGATCY	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	707
BstYI	RGATCY	1 cut(s)	34
BsuRI	GGCC	2 cut(s)	398, 930
BtsCI	GGATG	2 cut(s)	116, 314
BtsIMutI	CAGTG	1 cut(s)	598
Cac8I	GCNNGC	4 cut(s)	306, 400, 864, 868
Cfr10I	RCCGGY	1 cut(s)	880
Cfr13I	GGNCC	1 cut(s)	929
CseI	GACGC	2 cut(s)	56, 86
CspAI	ACCGGT	1 cut(s)	880
CviAII	CATG	2 cut(s)	449, 454
DdeI	CTNAG	8 cut(s)	102, 122, 129, 330, 655, 681, 807, 823
DpnI	GATC	3 cut(s)	36, 204, 765
DpnII	GATC	3 cut(s)	34, 202, 763
DraI	TTTAAA	1 cut(s)	240
DraIII	CACNNNGTG	1 cut(s)	173
EaeI	YGGCCR	1 cut(s)	396
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
EciI	GGCGGA	1 cut(s)	31
Ecl136II	GAGCTC	1 cut(s)	643
Eco24I	GRGCYC	2 cut(s)	645, 864
Eco53kI	GAGCTC	1 cut(s)	643
Eco57I	CTGAAG	3 cut(s)	92, 363, 765
Eco88I	CYCGRG	1 cut(s)	309
EcoICRI	GAGCTC	1 cut(s)	643
EcoRII	CCWGG	1 cut(s)	675
EcoT22I	ATGCAT	1 cut(s)	450
EcoT38I	GRGCYC	2 cut(s)	645, 864
FaeI	CATG	2 cut(s)	452, 457
FalI	AAGNNNNNCTT	6 cut(s)	339, 371, 417, 449, 609, 641
FatI	CATG	2 cut(s)	448, 453
FbaI	TGATCA	1 cut(s)	202
FblI	GTMKAC	1 cut(s)	487
Fnu4HI	GCNGC	5 cut(s)	15, 50, 114, 360, 904
FokI	GGATG	2 cut(s)	103, 301
FriOI	GRGCYC	2 cut(s)	645, 864
Fsp4HI	GCNGC	5 cut(s)	15, 50, 114, 360, 904
FspBI	CTAG	3 cut(s)	293, 369, 564
GluI	GCNGC	5 cut(s)	15, 50, 114, 360, 904
GsaI	CCCAGC	1 cut(s)	49
HaeIII	GGCC	2 cut(s)	398, 930
HapII	CCGG	1 cut(s)	881
HgaI	GACGC	2 cut(s)	56, 86
Hin1II	CATG	2 cut(s)	452, 457
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	8 cut(s)	260, 334, 383, 512, 607, 651, 695, 831
HpaII	CCGG	1 cut(s)	881
HphI	GGTGA	1 cut(s)	625
Hpy166II	GTNNAC	3 cut(s)	176, 488, 598
Hpy188I	TCNGA	8 cut(s)	72, 207, 247, 331, 382, 388, 526, 647
Hpy188III	TCNNGA	4 cut(s)	338, 369, 575, 886
Hpy8I	GTNNAC	3 cut(s)	176, 488, 598
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	3 cut(s)	93, 623, 940
HpyCH4V	TGCA	6 cut(s)	26, 113, 176, 359, 448, 773
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 55, 64, 803
HpyF3I	CTNAG	8 cut(s)	102, 122, 129, 330, 655, 681, 807, 823
Hsp92II	CATG	2 cut(s)	452, 457
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	34, 202, 763
LguI	GCTCTTC	1 cut(s)	633
LmnI	GCTCC	2 cut(s)	301, 648
Lsp1109I	GCAGC	4 cut(s)	36, 125, 371, 915
LweI	GCATC	4 cut(s)	100, 125, 323, 435
MaeI	CTAG	3 cut(s)	293, 369, 564
MaeIII	GTNAC	2 cut(s)	249, 934
MalI	GATC	3 cut(s)	36, 204, 765
MboI	GATC	3 cut(s)	34, 202, 763
MboII	GAAGA	8 cut(s)	95, 98, 119, 359, 369, 431, 513, 650
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	3 cut(s)	178, 645, 864
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	5 cut(s)	235, 341, 473, 556, 812
MluNI	TGGCCA	1 cut(s)	398
MlyI	GAGTC	2 cut(s)	689, 825
MmeI	TCCRAC	1 cut(s)	859
Mox20I	TGGCCA	1 cut(s)	398
Mph1103I	ATGCAT	1 cut(s)	450
MroXI	GAANNNNTTC	1 cut(s)	376
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	5 cut(s)	239, 500, 627, 665, 912
MslI	CAYNNNNRTG	2 cut(s)	705, 914
Msp20I	TGGCCA	1 cut(s)	398
MspA1I	CMGCKG	2 cut(s)	49, 731
MspCI	CTTAAG	1 cut(s)	626
MspI	CCGG	1 cut(s)	881
MspR9I	CCNGG	1 cut(s)	677
MvaI	CCWGG	1 cut(s)	677
MwoI	GCNNNNNNNGC	4 cut(s)	23, 55, 64, 803
NdeII	GATC	3 cut(s)	34, 202, 763
NlaIII	CATG	2 cut(s)	452, 457
NmuCI	GTSAC	1 cut(s)	934
NsiI	ATGCAT	1 cut(s)	450
PaeR7I	CTCGAG	1 cut(s)	309
PciSI	GCTCTTC	1 cut(s)	633
PdmI	GAANNNNTTC	1 cut(s)	376
PfeI	GAWTC	6 cut(s)	260, 334, 383, 512, 607, 651
PinAI	ACCGGT	1 cut(s)	880
PkrI	GCNGC	5 cut(s)	16, 51, 115, 361, 905
PleI	GAGTC	2 cut(s)	689, 825
PpsI	GAGTC	2 cut(s)	689, 825
Psp124BI	GAGCTC	1 cut(s)	645
Psp6I	CCWGG	1 cut(s)	675
PspFI	CCCAGC	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	675
PspPI	GGNCC	1 cut(s)	929
PspXI	VCTCGAGB	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	34
PvuII	CAGCTG	2 cut(s)	49, 731
RseI	CAYNNNNRTG	2 cut(s)	705, 914
SacI	GAGCTC	1 cut(s)	645
SapI	GCTCTTC	1 cut(s)	633
SaqAI	TTAA	5 cut(s)	239, 500, 627, 665, 912
SatI	GCNGC	5 cut(s)	15, 50, 114, 360, 904
Sau3AI	GATC	3 cut(s)	34, 202, 763
Sau96I	GGNCC	1 cut(s)	929
SchI	GAGTC	2 cut(s)	689, 825
ScrFI	CCNGG	1 cut(s)	677
SduI	GDGCHC	3 cut(s)	178, 645, 864
SfaNI	GCATC	4 cut(s)	100, 125, 323, 435
SfcI	CTRYAG	1 cut(s)	459
Sfr274I	CTCGAG	1 cut(s)	309
SlaI	CTCGAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	2 cut(s)	705, 914
SmlI	CTYRAG	6 cut(s)	184, 309, 434, 626, 846, 886
SmoI	CTYRAG	6 cut(s)	184, 309, 434, 626, 846, 886
Sse9I	AATT	5 cut(s)	235, 341, 473, 556, 812
SsiI	CCGC	2 cut(s)	14, 42
SspMI	CTAG	3 cut(s)	293, 369, 564
SstI	GAGCTC	1 cut(s)	645
StyD4I	CCNGG	1 cut(s)	675
TaaI	ACNGT	3 cut(s)	93, 623, 940
TaqI	TCGA	2 cut(s)	97, 310
TasI	AATT	5 cut(s)	235, 341, 473, 556, 812
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	6 cut(s)	260, 334, 383, 512, 607, 651
Tru1I	TTAA	5 cut(s)	239, 500, 627, 665, 912
Tru9I	TTAA	5 cut(s)	239, 500, 627, 665, 912
TscAI	CASTG	1 cut(s)	605
TseFI	GTSAC	1 cut(s)	934
TseI	GCWGC	4 cut(s)	49, 113, 359, 903
Tsp45I	GTSAC	1 cut(s)	934
TspDTI	ATGAA	4 cut(s)	155, 402, 651, 932
TspRI	CASTG	1 cut(s)	605
Vha464I	CTTAAG	1 cut(s)	626
VneI	GTGCAC	1 cut(s)	174
XbaI	TCTAGA	1 cut(s)	368
XhoI	CTCGAG	1 cut(s)	309
XmiI	GTMKAC	1 cut(s)	487
XmnI	GAANNNNTTC	1 cut(s)	376
XspI	CTAG	3 cut(s)	293, 369, 564
Zsp2I	ATGCAT	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.