Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004466

Physical Location & Seq

Genomic Coordinates Reverse (-)

75264111 .. 75273045

Gene Structure 8935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG438200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGTGAGTCTGGAATCGAAACAAACCAAAACAGAGAGCCAGAAACGCCGTGCTGAGGCTGAAGAGGGAAAACCATCCTCCTCAGCCTCGCCTTCGCTCTGCCATGGATTCCCGGCACGCATCTATAGGCCGCCGAACGATAATGGAGGAATGAGAAAATCGGAGAGCGCGAATCGACTCTCTGAGATAAGAGACTTGGATAGGAAGAATGCAGAACTGGAAGAACAAAACAAAAATTTGGATTCCATGCTTGAAACAAAGGAAGCCGGAAGTAATGATGTACTGCAGAAACGTTTGAATGATCTGGAGCAAAATACTGTACCGTCTTTGAGGAAAGCTCTCAAGGATGTCGCAATGGAGAAAGATGCAGCAGTTGTTGCACGGAAACGGCTAAAGGATGCAGAAGAAGAACAGTATCGAGCTGAGGAAGATGCTGCATCCCTGAGAGCAGAACTCAATATGATACAGCAACAAACAATGAGTGGCTCACTTGAAGTGTCAGACAAAGTGGCCAGCAAGGGATTTTCATTAGAAGACAAGGAGATACTCGAGAAGCAGATGCATGACATGGCTGTAGTGATTGAGAAATTGGAAAGCAGTAGACAAAAGCTTTTAATGGAGATTGATTCCCAATCTTCGGAGATAGAAAGGCTTTTTGAGAAAAACTCTAATTTATCTAGTTCTCTTCGGGAGGCTATGACCATAGCTGTGCACTGGGAGAATCTGCTCCGAGGAATCTTAGATAAGTTAAGAACTGACCAGGCCAAGGGGTTGCTCGACTCCCATAGCAATGGTTCTAACAAGACTGGTTTAGCTGAATACACACCTGAAGTTCTCTCTATTAAGGATCAACTTGCAAAAGAACAGAGCAAAGCAAAGGCATTATCAGCTGAGGTTTTACAGCTCTCAGCAAGACTCCAACAAACCACTCAAGCATACAATGGGCTTGCACGCCTCTATAAACCGGTGTTGCGAAACATAGAAAGCAGTCTCATTAAGATGAAACAAGATGGCCCTGTTACAGTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

343

Amino Acids

38.41

Weight (kDa)

6.02

Isoelectric Point (pI)

62.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59210 AT5G59210
fragaria_vesca	FvH4_2g37740 FvH4_3g37100 FvH4_3g37100
malus_domestica	MD03G1084900.v1.1 MD11G1092400.v1.1
prunus_persica	Prupe.6G068200_v2.0.a1
pyrus_communis	pycom11g07770
rosa_chinensis	RchiOBHm_Chr5g0066731 RchiOBHm_Chr5g0066821
rosa_laevigata	RLG00000035876
rosa_multiflora	Rmu_sc0000605.1_g000050
rosa_roxburghii	Rroxscaffold_1G00014280 Rroxscaffold_1G00014310 Rroxscaffold_1G00014340 Rroxscaffold_1G00014360 Rroxscaffold_1G00014490 Rroxscaffold_1G00014520
rosa_rugosa	Rorug05G0379000 Rorug05G0379000
rosa_samantha	Rh5AG438200 Rh5AG438400 Rh5BG454000 Rh5BG454600 Rh5BG455400 Rh5CG476300 Rh5CG476900 Rh5CG477500 Rh5DG469100 Rh5DG470200
rosa_wichuraiana	Rw5G040960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	601
AccII	CGCG	1 cut(s)	170
AciI	CCGC	1 cut(s)	131
AclI	AACGTT	1 cut(s)	292
AclWI	GGATC	1 cut(s)	855
AcoI	YGGCCR	1 cut(s)	510
AcsI	RAATTY	1 cut(s)	235
AcuI	CTGAAG	2 cut(s)	81, 849
AfaI	GTAC	2 cut(s)	282, 321
AfiI	CCNNNNNNNGG	3 cut(s)	55, 637, 766
AgeI	ACCGGT	1 cut(s)	964
AgsI	TTSAA	3 cut(s)	254, 298, 494
AjnI	CCWGG	1 cut(s)	759
AluBI	AGCT	7 cut(s)	338, 422, 610, 707, 815, 890, 904
AluI	AGCT	7 cut(s)	338, 422, 610, 707, 815, 890, 904
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	2 cut(s)	186, 995
Alw44I	GTGCAC	1 cut(s)	710
AlwI	GGATC	1 cut(s)	855
Ama87I	CYCGRG	1 cut(s)	548
AoxI	GGCC	4 cut(s)	128, 510, 762, 1012
ApaLI	GTGCAC	1 cut(s)	710
ApeKI	GCWGC	2 cut(s)	368, 434
ApoI	RAATTY	1 cut(s)	235
AsiGI	ACCGGT	1 cut(s)	964
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	1013
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	548
BaeGI	GKGCMC	1 cut(s)	714
BalI	TGGCCA	1 cut(s)	512
BbsI	GAAGAC	1 cut(s)	540
Bbv12I	GWGCWC	1 cut(s)	714
BbvCI	CCTCAGC	4 cut(s)	54, 82, 423, 891
BbvI	GCAGC	2 cut(s)	380, 421
BccI	CCATC	2 cut(s)	82, 1004
BceAI	ACGGC	2 cut(s)	33, 404
BciT130I	CCWGG	1 cut(s)	761
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	2 cut(s)	186, 995
BfaI	CTAG	1 cut(s)	678
BfmI	CTRYAG	3 cut(s)	124, 284, 573
BisI	GCNGC	3 cut(s)	131, 369, 435
BlsI	GCNGC	3 cut(s)	132, 370, 436
Bme1390I	CCNGG	2 cut(s)	113, 761
BmeT110I	CYCGRG	1 cut(s)	548
BmgT120I	GGNCC	1 cut(s)	1013
BmrFI	CCNGG	2 cut(s)	113, 761
BmrI	ACTGGG	1 cut(s)	724
BmsI	GCATC	6 cut(s)	129, 355, 388, 421, 446, 549
BmuI	ACTGGG	1 cut(s)	724
BpiI	GAAGAC	1 cut(s)	540
BplI	GAGNNNNNCTC	6 cut(s)	322, 354, 438, 470, 650, 682
BpmI	CTGGAG	1 cut(s)	326
Bpu10I	CCTNAGC	4 cut(s)	54, 82, 423, 891
BpuEI	CTTGAG	2 cut(s)	326, 915
BpuMI	CCSGG	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	103, 730, 765
BsaWI	WCCGGW	1 cut(s)	964
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 637, 766
Bse118I	RCCGGY	1 cut(s)	964
Bse1I	ACTGG	3 cut(s)	222, 719, 811
Bse3DI	GCAATG	2 cut(s)	360, 796
BseBI	CCWGG	1 cut(s)	761
BseDI	CCNNGG	3 cut(s)	103, 730, 765
BseGI	GGATG	4 cut(s)	74, 352, 403, 437
BseLI	CCNNNNNNNGG	3 cut(s)	55, 637, 766
BseMI	GCAATG	2 cut(s)	360, 796
BseMII	CTCAG	7 cut(s)	45, 96, 174, 414, 434, 882, 921
BseNI	ACTGG	3 cut(s)	222, 719, 811
BseRI	GAGGAG	1 cut(s)	70
BseSI	GKGCMC	1 cut(s)	714
BseXI	GCAGC	2 cut(s)	380, 421
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	4 cut(s)	130, 512, 764, 1014
BshTI	ACCGGT	1 cut(s)	964
BsiHKAI	GWGCWC	1 cut(s)	714
BsiHKCI	CYCGRG	1 cut(s)	548
BsiSI	CCGG	3 cut(s)	113, 267, 965
BslI	CCNNNNNNNGG	3 cut(s)	55, 637, 766
BsmAI	GTCTC	2 cut(s)	186, 995
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	4 cut(s)	130, 512, 764, 1014
BsoBI	CYCGRG	1 cut(s)	548
Bsp1286I	GDGCHC	1 cut(s)	714
Bsp143I	GATC	2 cut(s)	301, 847
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	4 cut(s)	130, 512, 764, 1014
BspCNI	CTCAG	7 cut(s)	46, 95, 175, 415, 435, 883, 920
BspFNI	CGCG	1 cut(s)	170
BspMAI	CTGCAG	1 cut(s)	288
BspPI	GGATC	1 cut(s)	855
BsrDI	GCAATG	2 cut(s)	360, 796
BsrFI	RCCGGY	1 cut(s)	964
BsrI	ACTGG	3 cut(s)	222, 719, 811
BssAI	RCCGGY	1 cut(s)	964
BssECI	CCNNGG	3 cut(s)	103, 730, 765
BssMI	GATC	2 cut(s)	301, 847
BssT1I	CCWWGG	2 cut(s)	103, 765
Bst2UI	CCWGG	1 cut(s)	761
Bst4CI	ACNGT	4 cut(s)	319, 324, 414, 1024
Bst6I	CTCTTC	2 cut(s)	57, 690
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstC8I	GCNNGC	4 cut(s)	118, 514, 948, 952
BstDEI	CTNAG	8 cut(s)	54, 82, 183, 423, 443, 739, 891, 907
BstDSI	CCRYGG	1 cut(s)	103
BstF5I	GGATG	4 cut(s)	74, 352, 403, 437
BstFNI	CGCG	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	2 cut(s)	304, 850
BstMAI	GTCTC	2 cut(s)	186, 995
BstMBI	GATC	2 cut(s)	301, 847
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 377, 887
BstNI	CCWGG	1 cut(s)	761
BstSCI	CCNGG	2 cut(s)	111, 759
BstSFI	CTRYAG	3 cut(s)	124, 284, 573
BstSLI	GKGCMC	1 cut(s)	714
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	2 cut(s)	380, 421
BstV2I	GAAGAC	1 cut(s)	540
BstXI	CCANNNNNNTGG	1 cut(s)	791
BsuRI	GGCC	4 cut(s)	130, 512, 764, 1014
BtgI	CCRYGG	1 cut(s)	103
BtsCI	GGATG	4 cut(s)	74, 352, 403, 437
BtsIMutI	CAGTG	2 cut(s)	712, 1029
Cac8I	GCNNGC	4 cut(s)	118, 514, 948, 952
CfoI	GCGC	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	964
Cfr13I	GGNCC	1 cut(s)	1013
Csp6I	GTAC	2 cut(s)	281, 320
CspAI	ACCGGT	1 cut(s)	964
CviAII	CATG	4 cut(s)	104, 247, 563, 568
CviQI	GTAC	2 cut(s)	281, 320
DdeI	CTNAG	8 cut(s)	54, 82, 183, 423, 443, 739, 891, 907
DpnI	GATC	2 cut(s)	303, 849
DpnII	GATC	2 cut(s)	301, 847
EaeI	YGGCCR	1 cut(s)	510
Eam1104I	CTCTTC	2 cut(s)	57, 690
EarI	CTCTTC	2 cut(s)	57, 690
Eco130I	CCWWGG	2 cut(s)	103, 765
Eco57I	CTGAAG	2 cut(s)	81, 849
Eco88I	CYCGRG	1 cut(s)	548
EcoRII	CCWGG	1 cut(s)	759
EcoT14I	CCWWGG	2 cut(s)	103, 765
EcoT22I	ATGCAT	1 cut(s)	564
ErhI	CCWWGG	2 cut(s)	103, 765
FaeI	CATG	4 cut(s)	107, 250, 566, 571
FatI	CATG	4 cut(s)	103, 246, 562, 567
FblI	GTMKAC	1 cut(s)	601
Fnu4HI	GCNGC	3 cut(s)	131, 369, 435
FokI	GGATG	4 cut(s)	61, 359, 410, 424
Fsp4HI	GCNGC	3 cut(s)	131, 369, 435
FspBI	CTAG	1 cut(s)	678
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	3 cut(s)	131, 369, 435
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	4 cut(s)	130, 512, 764, 1014
HapII	CCGG	3 cut(s)	113, 267, 965
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	4 cut(s)	107, 250, 566, 571
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HindIII	AAGCTT	1 cut(s)	608
HpaII	CCGG	3 cut(s)	113, 267, 965
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	602, 712
Hpy188I	TCNGA	5 cut(s)	163, 184, 502, 640, 731
Hpy188III	TCNNGA	4 cut(s)	11, 305, 550, 689
Hpy8I	GTNNAC	2 cut(s)	602, 712
HpyAV	CCTTC	1 cut(s)	102
HpyCH4III	ACNGT	4 cut(s)	319, 324, 414, 1024
HpyCH4IV	ACGT	1 cut(s)	292
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 377, 887
HpyF3I	CTNAG	8 cut(s)	54, 82, 183, 423, 443, 739, 891, 907
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	4 cut(s)	107, 250, 566, 571
HspAI	GCGC	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	301, 847
LmnI	GCTCC	2 cut(s)	307, 732
Lsp1109I	GCAGC	2 cut(s)	380, 421
LweI	GCATC	6 cut(s)	129, 355, 388, 421, 446, 549
MaeI	CTAG	1 cut(s)	678
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	1018
MalI	GATC	2 cut(s)	303, 849
MboI	GATC	2 cut(s)	301, 847
MboII	GAAGA	9 cut(s)	74, 217, 233, 416, 419, 440, 545, 627, 677
MhlI	GDGCHC	1 cut(s)	714
MlsI	TGGCCA	1 cut(s)	512
MluCI	AATT	3 cut(s)	235, 587, 670
MluNI	TGGCCA	1 cut(s)	512
MlyI	GAGTC	4 cut(s)	16, 171, 773, 909
MmeI	TCCRAC	1 cut(s)	943
Mox20I	TGGCCA	1 cut(s)	512
Mph1103I	ATGCAT	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	512
MseI	TTAA	4 cut(s)	614, 749, 843, 996
MslI	CAYNNNNRTG	3 cut(s)	707, 789, 998
Msp20I	TGGCCA	1 cut(s)	512
MspA1I	CMGCKG	1 cut(s)	890
MspI	CCGG	3 cut(s)	113, 267, 965
MspR9I	CCNGG	2 cut(s)	113, 761
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	761
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	3 cut(s)	45, 377, 887
NciI	CCSGG	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	2 cut(s)	301, 847
NlaIII	CATG	4 cut(s)	107, 250, 566, 571
NsiI	ATGCAT	1 cut(s)	564
PaeR7I	CTCGAG	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	7 cut(s)	14, 108, 172, 242, 626, 721, 735
PinAI	ACCGGT	1 cut(s)	964
PkrI	GCNGC	3 cut(s)	132, 370, 436
PleI	GAGTC	4 cut(s)	15, 171, 773, 909
PpsI	GAGTC	4 cut(s)	15, 171, 773, 909
Psp1406I	AACGTT	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	759
PspGI	CCWGG	1 cut(s)	759
PspPI	GGNCC	1 cut(s)	1013
PstI	CTGCAG	1 cut(s)	288
PvuII	CAGCTG	1 cut(s)	890
RsaI	GTAC	2 cut(s)	282, 321
RsaNI	GTAC	2 cut(s)	281, 320
RseI	CAYNNNNRTG	3 cut(s)	707, 789, 998
SaqAI	TTAA	4 cut(s)	614, 749, 843, 996
SatI	GCNGC	3 cut(s)	131, 369, 435
Sau3AI	GATC	2 cut(s)	301, 847
Sau96I	GGNCC	1 cut(s)	1013
SchI	GAGTC	4 cut(s)	16, 171, 773, 909
ScrFI	CCNGG	2 cut(s)	113, 761
SduI	GDGCHC	1 cut(s)	714
SfaNI	GCATC	6 cut(s)	129, 355, 388, 421, 446, 549
SfcI	CTRYAG	3 cut(s)	124, 284, 573
Sfr274I	CTCGAG	1 cut(s)	548
SlaI	CTCGAG	1 cut(s)	548
SmiMI	CAYNNNNRTG	3 cut(s)	707, 789, 998
SmlI	CTYRAG	3 cut(s)	341, 548, 930
SmoI	CTYRAG	3 cut(s)	341, 548, 930
Sse9I	AATT	3 cut(s)	235, 587, 670
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	678
StyD4I	CCNGG	2 cut(s)	111, 759
StyI	CCWWGG	2 cut(s)	103, 765
TaaI	ACNGT	4 cut(s)	319, 324, 414, 1024
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	5 cut(s)	17, 175, 418, 549, 777
TasI	AATT	3 cut(s)	235, 587, 670
TatI	WGTACW	1 cut(s)	280
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	7 cut(s)	14, 108, 172, 242, 626, 721, 735
Tru1I	TTAA	4 cut(s)	614, 749, 843, 996
Tru9I	TTAA	4 cut(s)	614, 749, 843, 996
TscAI	CASTG	2 cut(s)	719, 1029
TseI	GCWGC	2 cut(s)	368, 434
TspDTI	ATGAA	2 cut(s)	516, 1016
TspGWI	ACGGA	1 cut(s)	397
TspRI	CASTG	2 cut(s)	719, 1029
VneI	GTGCAC	1 cut(s)	710
XapI	RAATTY	1 cut(s)	235
XhoI	CTCGAG	1 cut(s)	548
XmiI	GTMKAC	1 cut(s)	601
XspI	CTAG	1 cut(s)	678
Zsp2I	ATGCAT	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.