Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004466

Physical Location & Seq

Genomic Coordinates Forward (+)

17931856 .. 17935339

Gene Structure 3484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00014490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAGAAAATCGGAGAGCGCGAATCGACTCTCTGAGAGCGATGTTAGTACTTTCGTTTCTCAGATAAGAGACTTGGATAGGAAGAATGCAGAACTGGAAGAACAAAACAAAAATTTGGCTTCCATGCTTGAAACAAAGGAAGCCGGGACTACTGTACTGCAGAAACGCTTGAATGATCTGCAAAATACTGTACCATCTTTGAGGAAAGCTCTCAAGGATGTCGCAATGGAGAAAGATGCAGCAGTTGTTGCACGGGAGGATCTCTCAGCCCAGCTGCGTATGCTCAAGAAACGTCTAAAGGATGCAGAAGAAGAACAGTATCGAGCTGAGGAAGATGCAGCATCCCTGAGAGCAGAACTCAATATGATACAGCAACAAACAATGAGTGGCTCACTTGGTGCACTAAACTCAATTGCTAATCCACCTGATCAGATAAAAACATTAGAAATTGAGTTGGCTAACATAAAGTCTGAGTTACAGCCTAGATCCTTTTATGGTTCTGTTGATTTTGTTGTGTGGCCGTTTAAAGTGTCAGAGAAAGTGGCCAGCGAGGGATTTTCATTAATTGATTCCCAATCTTCGGAGATAGAAAGGCTTTTTGAGGAAAACTCTAATTTATCTAGTTATCATCAGGAGGCTATGAGCATAGCTTTGTACTGGGAGAATCAGGTGAAAGACTGTCTTAAGCAAAATGAAGAGCTCCGAGGAATCTTAGATAAGTTAAGAACTGACCAGGCCAAGGGGTTGCTCGACTCCCATAGCAATGGCTCTAACAAGACTGGTTTAGCTGAATATACACCTGAAGTTCTCCCTATCAAGGATAAACTTGCAAAAGAACAGGGCAAAGCAGAGGCATTATCAGCTGAGGTATTACAGCTCTCAGCAAGACTCCAACAAACCACTCAAGCATACAATGGTCTTGTACGTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

34.77

Weight (kDa)

5.11

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59210 AT5G59210
fragaria_vesca	FvH4_2g37740 FvH4_3g37100 FvH4_3g37100
malus_domestica	MD03G1084900.v1.1 MD11G1092400.v1.1
prunus_persica	Prupe.6G068200_v2.0.a1
pyrus_communis	pycom11g07770
rosa_chinensis	RchiOBHm_Chr5g0066731 RchiOBHm_Chr5g0066821
rosa_laevigata	RLG00000035876
rosa_multiflora	Rmu_sc0000605.1_g000050
rosa_roxburghii	Rroxscaffold_1G00014280 Rroxscaffold_1G00014310 Rroxscaffold_1G00014340 Rroxscaffold_1G00014360 Rroxscaffold_1G00014490 Rroxscaffold_1G00014520
rosa_rugosa	Rorug05G0379000 Rorug05G0379000
rosa_samantha	Rh5AG438200 Rh5AG438400 Rh5BG454000 Rh5BG454600 Rh5BG455400 Rh5CG476300 Rh5CG476900 Rh5CG477500 Rh5DG469100 Rh5DG470200
rosa_wichuraiana	Rw5G040960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	20
AclWI	GGATC	2 cut(s)	267, 480
AcoI	YGGCCR	2 cut(s)	518, 543
AcsI	RAATTY	1 cut(s)	112
AcuI	CTGAAG	1 cut(s)	822
AdeI	CACNNNGTG	1 cut(s)	398
AfaI	GTAC	5 cut(s)	49, 156, 192, 656, 924
AfiI	CCNNNNNNNGG	3 cut(s)	580, 739, 817
AflII	CTTAAG	1 cut(s)	683
AgsI	TTSAA	2 cut(s)	131, 172
AjnI	CCWGG	1 cut(s)	732
AluBI	AGCT	8 cut(s)	209, 274, 326, 650, 700, 788, 863, 877
AluI	AGCT	8 cut(s)	209, 274, 326, 650, 700, 788, 863, 877
Alw21I	GWGCWC	2 cut(s)	403, 702
Alw26I	GTCTC	1 cut(s)	63
Alw44I	GTGCAC	1 cut(s)	399
AlwI	GGATC	2 cut(s)	267, 480
AoxI	GGCC	3 cut(s)	518, 543, 735
ApaLI	GTGCAC	1 cut(s)	399
ApeKI	GCWGC	3 cut(s)	239, 274, 338
ApoI	RAATTY	1 cut(s)	112
AseI	ATTAAT	1 cut(s)	563
AspLEI	GCGC	1 cut(s)	20
AsuC2I	CCSGG	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	682
BaeGI	GKGCMC	1 cut(s)	403
BalI	TGGCCA	1 cut(s)	545
BanII	GRGCYC	1 cut(s)	702
Bbv12I	GWGCWC	2 cut(s)	403, 702
BbvCI	CCTCAGC	2 cut(s)	327, 864
BbvI	GCAGC	3 cut(s)	251, 261, 350
BccI	CCATC	1 cut(s)	202
BceAI	ACGGC	1 cut(s)	505
BciT130I	CCWGG	1 cut(s)	734
BclI	TGATCA	1 cut(s)	427
BcnI	CCSGG	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	2 cut(s)	483, 621
BfmI	CTRYAG	1 cut(s)	158
BfrI	CTTAAG	1 cut(s)	683
BisI	GCNGC	3 cut(s)	240, 275, 339
BlsI	GCNGC	3 cut(s)	241, 276, 340
BmcAI	AGTACT	1 cut(s)	49
Bme1390I	CCNGG	2 cut(s)	145, 734
BmrFI	CCNGG	2 cut(s)	145, 734
BmrI	ACTGGG	1 cut(s)	667
BmsI	GCATC	4 cut(s)	226, 292, 325, 350
BmuI	ACTGGG	1 cut(s)	667
BplI	GAGNNNNNCTC	8 cut(s)	193, 225, 248, 280, 342, 374, 593, 625
Bpu10I	CCTNAGC	2 cut(s)	327, 864
BpuEI	CTTGAG	3 cut(s)	197, 269, 888
BpuMI	CCSGG	1 cut(s)	145
BsaJI	CCNNGG	2 cut(s)	703, 738
Bsc4I	CCNNNNNNNGG	3 cut(s)	580, 739, 817
Bse1I	ACTGG	3 cut(s)	99, 662, 784
Bse3DI	GCAATG	2 cut(s)	231, 769
BseBI	CCWGG	1 cut(s)	734
BseDI	CCNNGG	2 cut(s)	703, 738
BseGI	GGATG	3 cut(s)	223, 307, 341
BseLI	CCNNNNNNNGG	3 cut(s)	580, 739, 817
BseMI	GCAATG	2 cut(s)	231, 769
BseMII	CTCAG	8 cut(s)	24, 74, 279, 318, 338, 462, 855, 894
BseNI	ACTGG	3 cut(s)	99, 662, 784
BseSI	GKGCMC	1 cut(s)	403
BseXI	GCAGC	3 cut(s)	251, 261, 350
BseYI	CCCAGC	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	3 cut(s)	520, 545, 737
BsiHKAI	GWGCWC	2 cut(s)	403, 702
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	3 cut(s)	580, 739, 817
BsmAI	GTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	160
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	3 cut(s)	520, 545, 737
Bsp1286I	GDGCHC	2 cut(s)	403, 702
Bsp143I	GATC	4 cut(s)	175, 259, 427, 485
BspANI	GGCC	3 cut(s)	520, 545, 737
BspCNI	CTCAG	8 cut(s)	25, 73, 278, 319, 339, 463, 856, 893
BspFNI	CGCG	1 cut(s)	20
BspMAI	CTGCAG	1 cut(s)	162
BspPI	GGATC	2 cut(s)	267, 480
BspQI	GCTCTTC	1 cut(s)	690
BspTI	CTTAAG	1 cut(s)	683
BsrDI	GCAATG	2 cut(s)	231, 769
BsrI	ACTGG	3 cut(s)	99, 662, 784
BssECI	CCNNGG	2 cut(s)	703, 738
BssMI	GATC	4 cut(s)	175, 259, 427, 485
BssT1I	CCWWGG	1 cut(s)	738
Bst2UI	CCWGG	1 cut(s)	734
Bst4CI	ACNGT	4 cut(s)	154, 190, 318, 680
Bst6I	CTCTTC	1 cut(s)	690
BstAFI	CTTAAG	1 cut(s)	683
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	547
BstDEI	CTNAG	9 cut(s)	33, 60, 265, 327, 347, 471, 712, 864, 880
BstF5I	GGATG	3 cut(s)	223, 307, 341
BstFNI	CGCG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	4 cut(s)	178, 262, 430, 488
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	4 cut(s)	175, 259, 427, 485
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 280, 860
BstNI	CCWGG	1 cut(s)	734
BstSCI	CCNGG	2 cut(s)	143, 732
BstSFI	CTRYAG	1 cut(s)	158
BstSLI	GKGCMC	1 cut(s)	403
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	3 cut(s)	251, 261, 350
BstX2I	RGATCY	2 cut(s)	259, 485
BstXI	CCANNNNNNTGG	1 cut(s)	764
BstYI	RGATCY	2 cut(s)	259, 485
BsuRI	GGCC	3 cut(s)	520, 545, 737
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	3 cut(s)	223, 307, 341
Cac8I	GCNNGC	1 cut(s)	547
CfoI	GCGC	1 cut(s)	20
Csp6I	GTAC	5 cut(s)	48, 155, 191, 655, 923
CviAII	CATG	1 cut(s)	124
CviQI	GTAC	5 cut(s)	48, 155, 191, 655, 923
DdeI	CTNAG	9 cut(s)	33, 60, 265, 327, 347, 471, 712, 864, 880
DpnI	GATC	4 cut(s)	177, 261, 429, 487
DpnII	GATC	4 cut(s)	175, 259, 427, 485
DraI	TTTAAA	1 cut(s)	526
DraIII	CACNNNGTG	1 cut(s)	398
EaeI	YGGCCR	2 cut(s)	518, 543
Eam1104I	CTCTTC	1 cut(s)	690
EarI	CTCTTC	1 cut(s)	690
Ecl136II	GAGCTC	1 cut(s)	700
Eco130I	CCWWGG	1 cut(s)	738
Eco24I	GRGCYC	1 cut(s)	702
Eco53kI	GAGCTC	1 cut(s)	700
Eco57I	CTGAAG	1 cut(s)	822
EcoICRI	GAGCTC	1 cut(s)	700
EcoRII	CCWGG	1 cut(s)	732
EcoT14I	CCWWGG	1 cut(s)	738
EcoT38I	GRGCYC	1 cut(s)	702
ErhI	CCWWGG	1 cut(s)	738
FaeI	CATG	1 cut(s)	127
FalI	AAGNNNNNCTT	2 cut(s)	666, 698
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	1 cut(s)	123
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	3 cut(s)	240, 275, 339
FokI	GGATG	3 cut(s)	230, 314, 328
FriOI	GRGCYC	1 cut(s)	702
Fsp4HI	GCNGC	3 cut(s)	240, 275, 339
FspBI	CTAG	2 cut(s)	483, 621
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	3 cut(s)	240, 275, 339
GsaI	CCCAGC	1 cut(s)	274
HaeIII	GGCC	3 cut(s)	520, 545, 737
HapII	CCGG	1 cut(s)	144
HhaI	GCGC	1 cut(s)	20
Hin1II	CATG	1 cut(s)	127
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HinfI	GANTC	7 cut(s)	22, 27, 569, 664, 708, 752, 888
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	1 cut(s)	682
Hpy166II	GTNNAC	1 cut(s)	401
Hpy188I	TCNGA	8 cut(s)	13, 34, 63, 432, 472, 535, 583, 704
Hpy188III	TCNNGA	2 cut(s)	286, 632
Hpy8I	GTNNAC	1 cut(s)	401
HpyCH4III	ACNGT	4 cut(s)	154, 190, 318, 680
HpyCH4IV	ACGT	2 cut(s)	292, 925
HpyCH4V	TGCA	9 cut(s)	89, 160, 181, 239, 251, 305, 338, 401, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 280, 860
HpyF3I	CTNAG	9 cut(s)	33, 60, 265, 327, 347, 471, 712, 864, 880
HpySE526I	ACGT	2 cut(s)	292, 925
Hsp92II	CATG	1 cut(s)	127
HspAI	GCGC	1 cut(s)	18
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	4 cut(s)	175, 259, 427, 485
LguI	GCTCTTC	1 cut(s)	690
LmnI	GCTCC	1 cut(s)	705
Lsp1109I	GCAGC	3 cut(s)	251, 261, 350
LweI	GCATC	4 cut(s)	226, 292, 325, 350
MaeI	CTAG	2 cut(s)	483, 621
MaeII	ACGT	2 cut(s)	292, 925
MaeIII	GTNAC	1 cut(s)	474
MalI	GATC	4 cut(s)	177, 261, 429, 487
MboI	GATC	4 cut(s)	175, 259, 427, 485
MboII	GAAGA	7 cut(s)	94, 110, 320, 323, 344, 570, 707
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	2 cut(s)	259, 485
MhlI	GDGCHC	2 cut(s)	403, 702
MlsI	TGGCCA	1 cut(s)	545
MluCI	AATT	5 cut(s)	112, 411, 447, 564, 613
MluNI	TGGCCA	1 cut(s)	545
MlyI	GAGTC	3 cut(s)	21, 746, 882
MmeI	TCCRAC	1 cut(s)	916
MnlI	CCTC	9 cut(s)	195, 250, 322, 544, 595, 628, 698, 844, 859
Mox20I	TGGCCA	1 cut(s)	545
MscI	TGGCCA	1 cut(s)	545
MseI	TTAA	4 cut(s)	525, 563, 684, 722
MslI	CAYNNNNRTG	1 cut(s)	762
Msp20I	TGGCCA	1 cut(s)	545
MspA1I	CMGCKG	2 cut(s)	274, 863
MspCI	CTTAAG	1 cut(s)	683
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	2 cut(s)	145, 734
MunI	CAATTG	1 cut(s)	411
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	734
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	3 cut(s)	248, 280, 860
NciI	CCSGG	1 cut(s)	145
NdeII	GATC	4 cut(s)	175, 259, 427, 485
NlaIII	CATG	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	690
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PctI	GAATGC	1 cut(s)	91
PfeI	GAWTC	4 cut(s)	22, 569, 664, 708
PkrI	GCNGC	3 cut(s)	241, 276, 340
PleI	GAGTC	3 cut(s)	21, 746, 882
PpsI	GAGTC	3 cut(s)	21, 746, 882
PshBI	ATTAAT	1 cut(s)	563
Psp124BI	GAGCTC	1 cut(s)	702
Psp6I	CCWGG	1 cut(s)	732
PspFI	CCCAGC	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	732
PstI	CTGCAG	1 cut(s)	162
PsuI	RGATCY	2 cut(s)	259, 485
PvuII	CAGCTG	2 cut(s)	274, 863
RsaI	GTAC	5 cut(s)	49, 156, 192, 656, 924
RsaNI	GTAC	5 cut(s)	48, 155, 191, 655, 923
RseI	CAYNNNNRTG	1 cut(s)	762
SacI	GAGCTC	1 cut(s)	702
SapI	GCTCTTC	1 cut(s)	690
SaqAI	TTAA	4 cut(s)	525, 563, 684, 722
SatI	GCNGC	3 cut(s)	240, 275, 339
Sau3AI	GATC	4 cut(s)	175, 259, 427, 485
ScaI	AGTACT	1 cut(s)	49
SchI	GAGTC	3 cut(s)	21, 746, 882
ScrFI	CCNGG	2 cut(s)	145, 734
SduI	GDGCHC	2 cut(s)	403, 702
SfaNI	GCATC	4 cut(s)	226, 292, 325, 350
SfcI	CTRYAG	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	762
SmlI	CTYRAG	4 cut(s)	212, 284, 683, 903
SmoI	CTYRAG	4 cut(s)	212, 284, 683, 903
Sse9I	AATT	5 cut(s)	112, 411, 447, 564, 613
SspMI	CTAG	2 cut(s)	483, 621
SstI	GAGCTC	1 cut(s)	702
StyD4I	CCNGG	2 cut(s)	143, 732
StyI	CCWWGG	1 cut(s)	738
TaaI	ACNGT	4 cut(s)	154, 190, 318, 680
TaiI	ACGT	2 cut(s)	295, 928
TaqI	TCGA	3 cut(s)	25, 322, 750
TasI	AATT	5 cut(s)	112, 411, 447, 564, 613
TatI	WGTACW	3 cut(s)	47, 154, 654
TfiI	GAWTC	4 cut(s)	22, 569, 664, 708
Tru1I	TTAA	4 cut(s)	525, 563, 684, 722
Tru9I	TTAA	4 cut(s)	525, 563, 684, 722
TseI	GCWGC	3 cut(s)	239, 274, 338
TspDTI	ATGAA	2 cut(s)	549, 708
Vha464I	CTTAAG	1 cut(s)	683
VneI	GTGCAC	1 cut(s)	399
VspI	ATTAAT	1 cut(s)	563
XapI	RAATTY	1 cut(s)	112
XspI	CTAG	2 cut(s)	483, 621
ZrmI	AGTACT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.