pycom11g07770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0004466
Physical Location & Seq
Forward (+)
5928872 .. 5932472
3601 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g07770.10

Sequence Viewer

Length: 1311 bp
ATGGACTCCCGCCACGCAACTCTCGGCCGACGAACGTTGGAAGAAATTCGCCAAAAGCGAGCCGCAGAAAAGTTGAGCAAAACTTCGTCGGGACCCGATCTCAGCAAAATCTCGATTCCAATCGATAATGGAGGAATGCGAAAATCAGAGAGCGCGAATCGGCTCTCTGAGAGCGACGTTAGTGTTTTGGTTGCCCAGATAAAAGACTTAGAGAAGAAAAATGCGGAATTGGAGGAGCAAAACAAAAGCTTGGCTTCCTTGCTTGAAACAAAGGAAGCCGGGGGCGATGTGCTGCAGAAACGTTTGAATGATCTGGAGAAAAACACTGTACCGTCTTTGAGAAAAGCTCTCAAGGATGTTGCAATGGAGAAAGATGCGGCAGTTGTTGCACGGGAGGATCTTTCAGCCCAGCTTCGTACACTCAAGAAACGGTTGAAGGATGCAGAAGAAGAACAATATCGAGCTGAGGAAGATGCAGCCGCTTTGAGAGCTGAACTGAATATGTTACAGCAACAAGCAATGAGTGGTTCACTTAGTGCAATGAACTCAACTTCTAATTCACCAGATCAGATACAAATGTTAGAAAAGGAGCTGGCTAGCTTAAAATCTGCGTTACAGCAAGAGTCACACTTGAGGCAGCAAGAGAGACAACAATTAGCAGAGGAGCAAGCCCGGGCATCCACCCTTACATCTGTAAAGCAGGAATTGGAGGAAAAGCTTGCAGCTATGTCTAGAAAGGCTTCAGAAGTCTCAGAGAAAGTGGCTGGCAAGGAATTTTCACTCGAAGACAAGGAGAAACTGGAGAAGCAGTTGCATGACATGGCGGTAGTGATTGAGAGATTGGAAAGTAGTAGACAAAAACTTTTGATAGAGATTGATTCCCAATCTTCGGAGATAGAAAGGCTTTTCGAGGAAAATTCTGATCTCTCGAATTCCTATCAGCAAGCGATGAGCATATCAGGGCACTGGGAGAATCAGGTGAAAGACTGTCTTAAGCATAATGAAGAGCTCCGTGCAACTATAGATAAGTTGAGAACCGACCAGTCCAAGGGGTTGCTAGAATCCCAAGAAGGCGGGGCCAATGAGACTGGTTCAGCTGCGTATACAACTGAAGTTCTCTCCATCAAGCAACTTGCGAAAGAACAGAGCAGAGCAGAGGCGTTGTCAGCTGAAGTATTGCAGCTTTCCGCACGACTCCAACAAGCTACCCAAGCATACAATGGGCTTGCACGCCTCTATAAACCAGTGTTGCGAAACATTGAAAACAATCTCATCAAGATGAAACAAGATGGCCCTATGACCGTGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

437

Amino Acids

48.76

Weight (kDa)

5.56

Isoelectric Point (pI)

60.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 853, 1103
AccII CGCG 1 cut(s) 155
AciI CCGC 9 cut(s) 10, 63, 224, 377, 480, 824, 1074, 1188, 1306
AclI AACGTT 2 cut(s) 35, 301
AclWI GGATC 1 cut(s) 405
AcoI YGGCCR 1 cut(s) 25
AcsI RAATTY 4 cut(s) 45, 773, 916, 931
AcuI CTGAAG 3 cut(s) 726, 1131, 1191
AdeI CACNNNGTG 1 cut(s) 536
AfaI GTAC 2 cut(s) 330, 418
AfiI CCNNNNNNNGG 2 cut(s) 889, 1048
AflII CTTAAG 1 cut(s) 992
AgsI TTSAA 4 cut(s) 266, 307, 436, 1262
Alw21I GWGCWC 1 cut(s) 1011
Alw26I GTCTC 3 cut(s) 640, 754, 1079
AlwI GGATC 1 cut(s) 405
Ama87I CYCGRG 1 cut(s) 672
AoxI GGCC 3 cut(s) 25, 1077, 1291
ApeKI GCWGC 6 cut(s) 292, 476, 637, 722, 1097, 1180
ApoI RAATTY 4 cut(s) 45, 773, 916, 931
Asp700I GAANNNNTTC 2 cut(s) 45, 739
AspLEI GCGC 1 cut(s) 155
AspS9I GGNCC 3 cut(s) 92, 1077, 1292
AsuC2I CCSGG 3 cut(s) 280, 673, 674
AsuHPI GGTGA 2 cut(s) 552, 991
AsuNHI GCTAGC 1 cut(s) 596
AvaI CYCGRG 1 cut(s) 672
AvaII GGWCC 1 cut(s) 92
BaeGI GKGCMC 1 cut(s) 966
BaeI ACNNNNGTAYC 2 cut(s) 563, 596
BanII GRGCYC 1 cut(s) 1011
BbsI GAAGAC 1 cut(s) 792
Bbv12I GWGCWC 1 cut(s) 1011
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 6 cut(s) 279, 488, 649, 734, 1084, 1192
BccI CCATC 2 cut(s) 1130, 1283
BcnI CCSGG 3 cut(s) 280, 673, 674
BcoDI GTCTC 3 cut(s) 640, 754, 1079
BfaI CTAG 3 cut(s) 597, 732, 1058
BfmI CTRYAG 2 cut(s) 293, 1020
BfrI CTTAAG 1 cut(s) 992
BisI GCNGC 9 cut(s) 63, 293, 378, 477, 480, 638, 723, 1098, 1181
BlsI GCNGC 9 cut(s) 64, 294, 379, 478, 481, 639, 724, 1099, 1182
Bme1390I CCNGG 3 cut(s) 280, 673, 674
Bme18I GGWCC 1 cut(s) 92
BmeT110I CYCGRG 1 cut(s) 672
BmgT120I GGNCC 3 cut(s) 92, 1077, 1292
BmiI GGNNCC 3 cut(s) 93, 94, 1078
BmrFI CCNGG 3 cut(s) 280, 673, 674
BmrI ACTGGG 1 cut(s) 976
BmsI GCATC 4 cut(s) 364, 430, 463, 686
BmtI GCTAGC 1 cut(s) 600
BmuI ACTGGG 1 cut(s) 976
BpiI GAAGAC 1 cut(s) 792
BplI GAGNNNNNCTC 2 cut(s) 331, 363
BpmI CTGGAG 2 cut(s) 335, 821
Bpu10I CCTNAGC 1 cut(s) 465
BpuEI CTTGAG 3 cut(s) 335, 407, 652
BpuMI CCSGG 3 cut(s) 280, 673, 674
Bsa29I ATCGAT 1 cut(s) 123
BsaBI GATNNNNATC 1 cut(s) 119
BsaJI CCNNGG 3 cut(s) 279, 672, 1047
BsaXI ACNNNNNCTCC 2 cut(s) 794, 824
Bsc4I CCNNNNNNNGG 2 cut(s) 889, 1048
Bse1I ACTGG 5 cut(s) 804, 971, 1042, 1093, 1244
Bse3DI GCAATG 3 cut(s) 369, 525, 546
Bse8I GATNNNNATC 1 cut(s) 119
BseCI ATCGAT 1 cut(s) 123
BseDI CCNNGG 3 cut(s) 279, 672, 1047
BseGI GGATG 3 cut(s) 361, 445, 677
BseJI GATNNNNATC 1 cut(s) 119
BseLI CCNNNNNNNGG 2 cut(s) 889, 1048
BseMI GCAATG 3 cut(s) 369, 525, 546
BseMII CTCAG 4 cut(s) 115, 159, 456, 765
BseNI ACTGG 5 cut(s) 804, 971, 1042, 1093, 1244
BseRI GAGGAG 2 cut(s) 248, 677
BseSI GKGCMC 1 cut(s) 966
BseX3I CGGCCG 1 cut(s) 25
BseXI GCAGC 6 cut(s) 279, 488, 649, 734, 1084, 1192
BseYI CCCAGC 1 cut(s) 408
Bsh1236I CGCG 1 cut(s) 155
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 3 cut(s) 27, 1079, 1293
BshVI ATCGAT 1 cut(s) 123
BsiEI CGRYCG 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 1011
BsiHKCI CYCGRG 1 cut(s) 672
BsiSI CCGG 2 cut(s) 279, 673
BslFI GGGAC 1 cut(s) 105
BslI CCNNNNNNNGG 2 cut(s) 889, 1048
BsmAI GTCTC 3 cut(s) 640, 754, 1079
BsmFI GGGAC 1 cut(s) 105
BsmI GAATGC 1 cut(s) 141
BsnI GGCC 3 cut(s) 27, 1079, 1293
BsoBI CYCGRG 1 cut(s) 672
Bsp1286I GDGCHC 2 cut(s) 966, 1011
Bsp143I GATC 5 cut(s) 97, 310, 397, 565, 922
BspACI CCGC 9 cut(s) 10, 63, 224, 377, 480, 824, 1074, 1188, 1306
BspANI GGCC 3 cut(s) 27, 1079, 1293
BspCNI CTCAG 4 cut(s) 114, 160, 457, 764
BspDI ATCGAT 1 cut(s) 123
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 3 cut(s) 93, 94, 1078
BspMAI CTGCAG 1 cut(s) 297
BspOI GCTAGC 1 cut(s) 600
BspPI GGATC 1 cut(s) 405
BspQI GCTCTTC 1 cut(s) 999
BspTI CTTAAG 1 cut(s) 992
BsrDI GCAATG 3 cut(s) 369, 525, 546
BsrI ACTGG 5 cut(s) 804, 971, 1042, 1093, 1244
BssECI CCNNGG 3 cut(s) 279, 672, 1047
BssMI GATC 5 cut(s) 97, 310, 397, 565, 922
BssNAI GTATAC 1 cut(s) 1104
BssT1I CCWWGG 1 cut(s) 1047
Bst1107I GTATAC 1 cut(s) 1104
Bst4CI ACNGT 5 cut(s) 328, 333, 432, 989, 1303
Bst6I CTCTTC 1 cut(s) 999
BstAFI CTTAAG 1 cut(s) 992
BstAPI GCANNNNNTGC 1 cut(s) 386
BstC8I GCNNGC 9 cut(s) 60, 594, 598, 669, 720, 766, 945, 1227, 1231
BstDEI CTNAG 6 cut(s) 101, 168, 208, 465, 533, 751
BstF5I GGATG 3 cut(s) 361, 445, 677
BstFNI CGCG 1 cut(s) 155
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 5 cut(s) 100, 313, 400, 568, 925
BstMAI GTCTC 3 cut(s) 640, 754, 1079
BstMBI GATC 5 cut(s) 97, 310, 397, 565, 922
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 4 cut(s) 386, 488, 1166, 1211
BstSCI CCNGG 3 cut(s) 278, 671, 672
BstSFI CTRYAG 2 cut(s) 293, 1020
BstSLI GKGCMC 1 cut(s) 966
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 6 cut(s) 279, 488, 649, 734, 1084, 1192
BstV2I GAAGAC 1 cut(s) 792
BstX2I RGATCY 1 cut(s) 397
BstYI RGATCY 1 cut(s) 397
BstZ17I GTATAC 1 cut(s) 1104
BstZI CGGCCG 1 cut(s) 25
Bsu15I ATCGAT 1 cut(s) 123
BsuRI GGCC 3 cut(s) 27, 1079, 1293
BsuTUI ATCGAT 1 cut(s) 123
BtgZI GCGATG 2 cut(s) 300, 962
BtsCI GGATG 3 cut(s) 361, 445, 677
BtsIMutI CAGTG 3 cut(s) 324, 964, 1251
Cac8I GCNNGC 9 cut(s) 60, 594, 598, 669, 720, 766, 945, 1227, 1231
CfoI GCGC 1 cut(s) 155
Cfr13I GGNCC 3 cut(s) 92, 1077, 1292
Cfr9I CCCGGG 1 cut(s) 672
ClaI ATCGAT 1 cut(s) 123
Csp6I GTAC 2 cut(s) 329, 417
CviAII CATG 2 cut(s) 815, 820
CviQI GTAC 2 cut(s) 329, 417
DdeI CTNAG 6 cut(s) 101, 168, 208, 465, 533, 751
DpnI GATC 5 cut(s) 99, 312, 399, 567, 924
DpnII GATC 5 cut(s) 97, 310, 397, 565, 922
DraIII CACNNNGTG 1 cut(s) 536
EaeI YGGCCR 1 cut(s) 25
EagI CGGCCG 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 999
EarI CTCTTC 1 cut(s) 999
Ecl136II GAGCTC 1 cut(s) 1009
EclXI CGGCCG 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 1047
Eco24I GRGCYC 1 cut(s) 1011
Eco47I GGWCC 1 cut(s) 92
Eco52I CGGCCG 1 cut(s) 25
Eco53kI GAGCTC 1 cut(s) 1009
Eco57I CTGAAG 3 cut(s) 726, 1131, 1191
Eco88I CYCGRG 1 cut(s) 672
EcoICRI GAGCTC 1 cut(s) 1009
EcoO109I RGGNCCY 1 cut(s) 92
EcoRI GAATTC 1 cut(s) 931
EcoT14I CCWWGG 1 cut(s) 1047
EcoT38I GRGCYC 1 cut(s) 1011
ErhI CCWWGG 1 cut(s) 1047
FaeI CATG 2 cut(s) 818, 823
FalI AAGNNNNNCTT 4 cut(s) 238, 270, 975, 1007
FaqI GGGAC 1 cut(s) 105
FatI CATG 2 cut(s) 814, 819
FauI CCCGC 2 cut(s) 17, 1067
FblI GTMKAC 2 cut(s) 853, 1103
Fnu4HI GCNGC 9 cut(s) 63, 293, 378, 477, 480, 638, 723, 1098, 1181
FokI GGATG 3 cut(s) 368, 452, 664
FriOI GRGCYC 1 cut(s) 1011
Fsp4HI GCNGC 9 cut(s) 63, 293, 378, 477, 480, 638, 723, 1098, 1181
FspBI CTAG 3 cut(s) 597, 732, 1058
GlaI GCGC 1 cut(s) 154
GluI GCNGC 9 cut(s) 63, 293, 378, 477, 480, 638, 723, 1098, 1181
GsaI CCCAGC 1 cut(s) 412
GsuI CTGGAG 2 cut(s) 335, 821
HaeIII GGCC 3 cut(s) 27, 1079, 1293
HapII CCGG 2 cut(s) 279, 673
HhaI GCGC 1 cut(s) 155
Hin1II CATG 2 cut(s) 818, 823
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HindIII AAGCTT 2 cut(s) 247, 716
HinfI GANTC 8 cut(s) 5, 115, 157, 623, 878, 973, 1061, 1194
HpaII CCGG 2 cut(s) 279, 673
HphI GGTGA 2 cut(s) 552, 991
Hpy166II GTNNAC 4 cut(s) 419, 530, 854, 1104
Hpy188I TCNGA 7 cut(s) 148, 169, 570, 745, 754, 892, 922
Hpy188III TCNNGA 7 cut(s) 90, 112, 314, 424, 732, 928, 1276
Hpy8I GTNNAC 4 cut(s) 419, 530, 854, 1104
Hpy99I CGWCG 3 cut(s) 33, 91, 179
HpyAV CCTTC 2 cut(s) 430, 1064
HpyCH4III ACNGT 5 cut(s) 328, 333, 432, 989, 1303
HpyCH4IV ACGT 3 cut(s) 35, 177, 301
HpyF10VI GCNNNNNNNGC 4 cut(s) 386, 488, 1166, 1211
HpyF3I CTNAG 6 cut(s) 101, 168, 208, 465, 533, 751
HpySE526I ACGT 3 cut(s) 35, 177, 301
Hsp92II CATG 2 cut(s) 818, 823
HspAI GCGC 1 cut(s) 153
KflI GGGWCCC 1 cut(s) 92
Kzo9I GATC 5 cut(s) 97, 310, 397, 565, 922
LguI GCTCTTC 1 cut(s) 999
LmnI GCTCC 4 cut(s) 235, 589, 664, 1014
Lsp1109I GCAGC 6 cut(s) 279, 488, 649, 734, 1084, 1192
LweI GCATC 4 cut(s) 364, 430, 463, 686
MaeI CTAG 3 cut(s) 597, 732, 1058
MaeII ACGT 3 cut(s) 35, 177, 301
MaeIII GTNAC 3 cut(s) 504, 612, 624
MalI GATC 5 cut(s) 99, 312, 399, 567, 924
MboI GATC 5 cut(s) 97, 310, 397, 565, 922
MboII GAAGA 8 cut(s) 53, 226, 458, 461, 482, 797, 879, 1016
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 2 cut(s) 966, 1011
MluCI AATT 8 cut(s) 45, 227, 556, 653, 704, 773, 916, 931
MlyI GAGTC 2 cut(s) 632, 1188
MmeI TCCRAC 2 cut(s) 18, 1222
MroXI GAANNNNTTC 2 cut(s) 45, 739
MseI TTAA 2 cut(s) 602, 993
MslI CAYNNNNRTG 1 cut(s) 1277
MspA1I CMGCKG 2 cut(s) 1097, 1169
MspCI CTTAAG 1 cut(s) 992
MspI CCGG 2 cut(s) 279, 673
MspR9I CCNGG 3 cut(s) 280, 673, 674
Mva1269I GAATGC 1 cut(s) 141
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 4 cut(s) 386, 488, 1166, 1211
NciI CCSGG 3 cut(s) 280, 673, 674
NdeII GATC 5 cut(s) 97, 310, 397, 565, 922
NheI GCTAGC 1 cut(s) 596
NlaIII CATG 2 cut(s) 818, 823
NlaIV GGNNCC 3 cut(s) 93, 94, 1078
NmuCI GTSAC 1 cut(s) 624
PciSI GCTCTTC 1 cut(s) 999
PcsI WCGNNNNNNNCGW 1 cut(s) 55
PctI GAATGC 1 cut(s) 141
PdmI GAANNNNTTC 2 cut(s) 45, 739
PfeI GAWTC 5 cut(s) 115, 157, 878, 973, 1061
PkrI GCNGC 9 cut(s) 64, 294, 379, 478, 481, 639, 724, 1099, 1182
PleI GAGTC 2 cut(s) 631, 1188
PpsI GAGTC 2 cut(s) 631, 1188
PpuMI RGGWCCY 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 1011
Psp1406I AACGTT 2 cut(s) 35, 301
Psp5II RGGWCCY 1 cut(s) 92
PspFI CCCAGC 1 cut(s) 408
PspN4I GGNNCC 3 cut(s) 93, 94, 1078
PspPI GGNCC 3 cut(s) 92, 1077, 1292
PspPPI RGGWCCY 1 cut(s) 92
PstI CTGCAG 1 cut(s) 297
PsuI RGATCY 1 cut(s) 397
PvuII CAGCTG 2 cut(s) 1097, 1169
RsaI GTAC 2 cut(s) 330, 418
RsaNI GTAC 2 cut(s) 329, 417
RseI CAYNNNNRTG 1 cut(s) 1277
SacI GAGCTC 1 cut(s) 1011
SapI GCTCTTC 1 cut(s) 999
SaqAI TTAA 2 cut(s) 602, 993
SatI GCNGC 9 cut(s) 63, 293, 378, 477, 480, 638, 723, 1098, 1181
Sau3AI GATC 5 cut(s) 97, 310, 397, 565, 922
Sau96I GGNCC 3 cut(s) 92, 1077, 1292
SchI GAGTC 2 cut(s) 632, 1188
ScrFI CCNGG 3 cut(s) 280, 673, 674
SduI GDGCHC 2 cut(s) 966, 1011
SfaNI GCATC 4 cut(s) 364, 430, 463, 686
SfcI CTRYAG 2 cut(s) 293, 1020
SinI GGWCC 1 cut(s) 92
SmaI CCCGGG 1 cut(s) 674
SmiMI CAYNNNNRTG 1 cut(s) 1277
SmlI CTYRAG 4 cut(s) 350, 422, 631, 992
SmoI CTYRAG 4 cut(s) 350, 422, 631, 992
SrfI GCCCGGGC 1 cut(s) 674
Sse9I AATT 8 cut(s) 45, 227, 556, 653, 704, 773, 916, 931
SsiI CCGC 9 cut(s) 10, 63, 224, 377, 480, 824, 1074, 1188, 1306
SspMI CTAG 3 cut(s) 597, 732, 1058
SstI GAGCTC 1 cut(s) 1011
StyD4I CCNGG 3 cut(s) 278, 671, 672
StyI CCWWGG 1 cut(s) 1047
TaaI ACNGT 5 cut(s) 328, 333, 432, 989, 1303
TaiI ACGT 3 cut(s) 38, 180, 304
TaqI TCGA 6 cut(s) 113, 123, 460, 783, 909, 929
TasI AATT 8 cut(s) 45, 227, 556, 653, 704, 773, 916, 931
TauI GCSGC 3 cut(s) 65, 380, 482
TfiI GAWTC 5 cut(s) 115, 157, 878, 973, 1061
Tru1I TTAA 2 cut(s) 602, 993
Tru9I TTAA 2 cut(s) 602, 993
TscAI CASTG 3 cut(s) 331, 971, 1251
TseFI GTSAC 1 cut(s) 624
TseI GCWGC 6 cut(s) 292, 476, 637, 722, 1097, 1180
Tsp45I GTSAC 1 cut(s) 624
TspDTI ATGAA 3 cut(s) 557, 1017, 1295
TspGWI ACGGA 1 cut(s) 1001
TspMI CCCGGG 1 cut(s) 672
TspRI CASTG 3 cut(s) 331, 971, 1251
Vha464I CTTAAG 1 cut(s) 992
VpaK11BI GGWCC 1 cut(s) 92
XapI RAATTY 4 cut(s) 45, 773, 916, 931
XbaI TCTAGA 1 cut(s) 731
XcmI CCANNNNNNNNNTGG 1 cut(s) 1217
XmaI CCCGGG 1 cut(s) 672
XmiI GTMKAC 2 cut(s) 853, 1103
XmnI GAANNNNTTC 2 cut(s) 45, 739
XspI CTAG 3 cut(s) 597, 732, 1058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.