RLG00000035876

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
72991816 .. 73011680
19865 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035876

Sequence Viewer

Length: 1311 bp
ATGGATTCCCGGCACGCGTCTCTAGGCCGCCGAACGTTGGAAGAAATTCGTCAAAAGCGAGCTGCAGAAAGATTGAGCAAAACTTCTTCCGGGCCCGATCTCAGCCAGATCCCACCTATCGATGGTGGAGGAATGAGAAAATCAGAGAGCGCAAATCGACTCTCTGAGAGCGATGTTAGTACTTTAGTTTCTCAGATAAGAGACTTGGATAGGAAGAATGCAGAACTGGAAGAACAAAACAAAAATTTGGCTTCCATGCTTGAAACAAAGGAAGCTGGGAGTAATGTGCTGCAGAAACGTTTGAATGATCTGGAGCAAAATACTGTACCGTCTTTGAGGAAAGCTCTCAAGGATGTCGCAATGGAGAAAGATGCAGCAGTTGTTGCACGGGAGGATCTCTCTGCCCAGCTGCGTATGCTCAAGAAACGTCTAAAGGACGCAGAAGAAGAACAGTATCGAGCTGAGGAAGATGCAGCATCCCTGAGAGCAGAACTCAATATGATACAGCAACAAACAATGAGTGGCTCACTTGGTGCACTAAACTCAATTGCTAATCCACCTGATCAGATAAAAACATTAGAAATTGAGTTAGCTAACATAAAGTCTGAGTTACAGCGAGAGTCAATGTTTAGACAGCAAGAACGACAGCAATTAGCTGAGGAGCAGGCTCGAGCATCCATCCTTACATCTGAGAAGCAAGAATTGGAAGAAAAACTTGCAGCTTTGTCCAGAAAGTCTTCAGAAGCGTCAGACAAAGTGGCCAGCAAGGGATTTTCATTAGAAGACAAGGAGGTACTCGAGAAGCAGATGCATGACATGGCTGTAGTGATTGAAAAATTGGAAAGCAGTAGACAAAAGCTTTTGATGGAGATTGATTCCCAATCTTCGGAGATAGAAAGGCTTTTTGAGGAAAACTCTAATTTATCTAGTTCTCATCAGGAGGCTATGAGCATAGCTTTGCACTGGGAGAATCAGGTGAAAGACTGTCTTAAGCAAAATGAAGAGCTCCGAGGAATCTTAGATAAGTTAAGAACTGACCACTCCAAGGGGTTGCTCGACTCCCATAGCAATGGTTCTAACAAGACTGGTTTAGCTGAATATACACCTGAAGTTCTCTCTATCAAGGATCAACTTGCAAAAGAACAGAGCAAAGCAGAGGCATTATCAGCTGAGGTATTACAGCTCTCAGCAAGACTCCAACAAACCACTCAAGCATACAATGGTCTTGCACGCCTCTATAAACCGGTGTTGCGAAACATAGAAAGCAGTCTCATTAAGATGAAACAAGATGGCCCTGTGACAGTGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

437

Amino Acids

48.93

Weight (kDa)

5.53

Isoelectric Point (pI)

62.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 850
AccII CGCG 1 cut(s) 17
AciI CCGC 2 cut(s) 28, 1306
AclI AACGTT 2 cut(s) 35, 298
AclWI GGATC 3 cut(s) 103, 402, 1134
AcoI YGGCCR 1 cut(s) 759
AcsI RAATTY 2 cut(s) 45, 244
AcuI CTGAAG 2 cut(s) 723, 1128
AdeI CACNNNGTG 1 cut(s) 533
AfaI GTAC 3 cut(s) 181, 327, 795
AfiI CCNNNNNNNGG 4 cut(s) 37, 122, 886, 1045
AflII CTTAAG 1 cut(s) 989
AflIII ACRYGT 1 cut(s) 15
AgeI ACCGGT 1 cut(s) 1243
AgsI TTSAA 3 cut(s) 263, 304, 833
AjuI GAANNNNNNNTTGG 2 cut(s) 686, 718
Alw21I GWGCWC 2 cut(s) 538, 1008
Alw26I GTCTC 3 cut(s) 24, 195, 1274
Alw44I GTGCAC 1 cut(s) 534
AlwI GGATC 3 cut(s) 103, 402, 1134
Ama87I CYCGRG 2 cut(s) 669, 797
AoxI GGCC 4 cut(s) 25, 92, 759, 1291
ApaI GGGCCC 1 cut(s) 96
ApaLI GTGCAC 1 cut(s) 534
ApeKI GCWGC 6 cut(s) 62, 289, 374, 409, 473, 719
ApoI RAATTY 2 cut(s) 45, 244
AsiGI ACCGGT 1 cut(s) 1243
Asp700I GAANNNNTTC 2 cut(s) 45, 736
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 3 cut(s) 92, 93, 1292
AsuC2I CCSGG 2 cut(s) 10, 91
AsuHPI GGTGA 1 cut(s) 988
AvaI CYCGRG 2 cut(s) 669, 797
BaeGI GKGCMC 2 cut(s) 96, 538
BalI TGGCCA 1 cut(s) 761
BanII GRGCYC 2 cut(s) 96, 1008
BbsI GAAGAC 2 cut(s) 729, 789
Bbv12I GWGCWC 2 cut(s) 538, 1008
BbvCI CCTCAGC 3 cut(s) 462, 657, 1170
BbvI GCAGC 6 cut(s) 49, 276, 386, 396, 485, 731
BccI CCATC 4 cut(s) 116, 686, 859, 1283
BclI TGATCA 1 cut(s) 562
BcnI CCSGG 2 cut(s) 10, 91
BcoDI GTCTC 3 cut(s) 24, 195, 1274
BfaI CTAG 2 cut(s) 23, 927
BfmI CTRYAG 3 cut(s) 63, 290, 822
BfrI CTTAAG 1 cut(s) 989
BisI GCNGC 7 cut(s) 28, 63, 290, 375, 410, 474, 720
BlsI GCNGC 7 cut(s) 29, 64, 291, 376, 411, 475, 721
BmcAI AGTACT 1 cut(s) 181
Bme1390I CCNGG 2 cut(s) 10, 91
BmeT110I CYCGRG 2 cut(s) 669, 797
BmgT120I GGNCC 3 cut(s) 92, 93, 1292
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 2 cut(s) 10, 91
BmrI ACTGGG 1 cut(s) 973
BmsI GCATC 5 cut(s) 361, 460, 485, 683, 798
BmuI ACTGGG 1 cut(s) 973
BpiI GAAGAC 2 cut(s) 729, 789
BplI GAGNNNNNCTC 8 cut(s) 328, 360, 383, 415, 477, 509, 899, 931
BpmI CTGGAG 1 cut(s) 332
Bpu10I CCTNAGC 3 cut(s) 462, 657, 1170
BpuEI CTTGAG 3 cut(s) 332, 404, 1194
BpuMI CCSGG 2 cut(s) 10, 91
Bsa29I ATCGAT 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 1009, 1044
BsaWI WCCGGW 1 cut(s) 1243
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 122, 886, 1045
Bse118I RCCGGY 1 cut(s) 1243
Bse1I ACTGG 3 cut(s) 231, 968, 1090
Bse3DI GCAATG 2 cut(s) 366, 1075
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 1009, 1044
BseGI GGATG 4 cut(s) 358, 476, 674, 678
BseLI CCNNNNNNNGG 4 cut(s) 37, 122, 886, 1045
BseMI GCAATG 2 cut(s) 366, 1075
BseNI ACTGG 3 cut(s) 231, 968, 1090
BseRI GAGGAG 1 cut(s) 674
BseSI GKGCMC 2 cut(s) 96, 538
BseXI GCAGC 6 cut(s) 49, 276, 386, 396, 485, 731
BseYI CCCAGC 2 cut(s) 275, 405
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 4 cut(s) 27, 94, 761, 1293
BshTI ACCGGT 1 cut(s) 1243
BshVI ATCGAT 1 cut(s) 120
BsiHKAI GWGCWC 2 cut(s) 538, 1008
BsiHKCI CYCGRG 2 cut(s) 669, 797
BsiSI CCGG 3 cut(s) 10, 90, 1244
BslI CCNNNNNNNGG 4 cut(s) 37, 122, 886, 1045
BsmAI GTCTC 3 cut(s) 24, 195, 1274
BsmBI CGTCTC 1 cut(s) 24
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 4 cut(s) 27, 94, 761, 1293
BsoBI CYCGRG 2 cut(s) 669, 797
Bsp120I GGGCCC 1 cut(s) 92
Bsp1286I GDGCHC 3 cut(s) 96, 538, 1008
Bsp143I GATC 6 cut(s) 97, 108, 307, 394, 562, 1126
BspACI CCGC 2 cut(s) 28, 1306
BspANI GGCC 4 cut(s) 27, 94, 761, 1293
BspDI ATCGAT 1 cut(s) 120
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 1 cut(s) 94
BspMAI CTGCAG 2 cut(s) 67, 294
BspPI GGATC 3 cut(s) 103, 402, 1134
BspQI GCTCTTC 1 cut(s) 996
BspTI CTTAAG 1 cut(s) 989
BsrDI GCAATG 2 cut(s) 366, 1075
BsrFI RCCGGY 1 cut(s) 1243
BsrI ACTGG 3 cut(s) 231, 968, 1090
BssAI RCCGGY 1 cut(s) 1243
BssECI CCNNGG 2 cut(s) 1009, 1044
BssMI GATC 6 cut(s) 97, 108, 307, 394, 562, 1126
BssT1I CCWWGG 1 cut(s) 1044
Bst4CI ACNGT 5 cut(s) 325, 330, 453, 986, 1303
Bst6I CTCTTC 1 cut(s) 996
BstAFI CTTAAG 1 cut(s) 989
BstAPI GCANNNNNTGC 1 cut(s) 383
BstC8I GCNNGC 5 cut(s) 15, 60, 666, 763, 1231
BstF5I GGATG 4 cut(s) 358, 476, 674, 678
BstFNI CGCG 1 cut(s) 17
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 6 cut(s) 100, 111, 310, 397, 565, 1129
BstMAI GTCTC 3 cut(s) 24, 195, 1274
BstMBI GATC 6 cut(s) 97, 108, 307, 394, 562, 1126
BstMWI GCNNNNNNNGC 3 cut(s) 383, 415, 1166
BstSCI CCNGG 2 cut(s) 8, 89
BstSFI CTRYAG 3 cut(s) 63, 290, 822
BstSLI GKGCMC 2 cut(s) 96, 538
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 6 cut(s) 49, 276, 386, 396, 485, 731
BstV2I GAAGAC 2 cut(s) 729, 789
BstX2I RGATCY 2 cut(s) 108, 394
BstXI CCANNNNNNTGG 1 cut(s) 1070
BstYI RGATCY 2 cut(s) 108, 394
Bsu15I ATCGAT 1 cut(s) 120
BsuRI GGCC 4 cut(s) 27, 94, 761, 1293
BsuTUI ATCGAT 1 cut(s) 120
BtgZI GCGATG 1 cut(s) 186
BtsCI GGATG 4 cut(s) 358, 476, 674, 678
BtsIMutI CAGTG 2 cut(s) 961, 1308
Cac8I GCNNGC 5 cut(s) 15, 60, 666, 763, 1231
CfoI GCGC 1 cut(s) 152
Cfr10I RCCGGY 1 cut(s) 1243
Cfr13I GGNCC 3 cut(s) 92, 93, 1292
ClaI ATCGAT 1 cut(s) 120
CseI GACGC 3 cut(s) 6, 446, 735
Csp6I GTAC 3 cut(s) 180, 326, 794
CspAI ACCGGT 1 cut(s) 1243
CviAII CATG 3 cut(s) 256, 812, 817
CviQI GTAC 3 cut(s) 180, 326, 794
DpnI GATC 6 cut(s) 99, 110, 309, 396, 564, 1128
DpnII GATC 6 cut(s) 97, 108, 307, 394, 562, 1126
DraIII CACNNNGTG 1 cut(s) 533
EaeI YGGCCR 1 cut(s) 759
Eam1104I CTCTTC 1 cut(s) 996
EarI CTCTTC 1 cut(s) 996
Ecl136II GAGCTC 1 cut(s) 1006
Eco130I CCWWGG 1 cut(s) 1044
Eco24I GRGCYC 2 cut(s) 96, 1008
Eco53kI GAGCTC 1 cut(s) 1006
Eco57I CTGAAG 2 cut(s) 723, 1128
Eco88I CYCGRG 2 cut(s) 669, 797
EcoICRI GAGCTC 1 cut(s) 1006
EcoT14I CCWWGG 1 cut(s) 1044
EcoT22I ATGCAT 1 cut(s) 813
EcoT38I GRGCYC 2 cut(s) 96, 1008
ErhI CCWWGG 1 cut(s) 1044
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 3 cut(s) 259, 815, 820
FalI AAGNNNNNCTT 4 cut(s) 699, 731, 972, 1004
FatI CATG 3 cut(s) 255, 811, 816
FbaI TGATCA 1 cut(s) 562
FblI GTMKAC 1 cut(s) 850
Fnu4HI GCNGC 7 cut(s) 28, 63, 290, 375, 410, 474, 720
FokI GGATG 4 cut(s) 365, 463, 661, 665
FriOI GRGCYC 2 cut(s) 96, 1008
Fsp4HI GCNGC 7 cut(s) 28, 63, 290, 375, 410, 474, 720
FspBI CTAG 2 cut(s) 23, 927
GlaI GCGC 1 cut(s) 151
GluI GCNGC 7 cut(s) 28, 63, 290, 375, 410, 474, 720
GsaI CCCAGC 2 cut(s) 279, 409
GsuI CTGGAG 1 cut(s) 332
HaeIII GGCC 4 cut(s) 27, 94, 761, 1293
HapII CCGG 3 cut(s) 10, 90, 1244
HgaI GACGC 3 cut(s) 6, 446, 735
HhaI GCGC 1 cut(s) 152
Hin1II CATG 3 cut(s) 259, 815, 820
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HindIII AAGCTT 1 cut(s) 857
HinfI GANTC 8 cut(s) 5, 159, 620, 875, 970, 1014, 1058, 1194
HpaII CCGG 3 cut(s) 10, 90, 1244
HphI GGTGA 1 cut(s) 988
Hpy166II GTNNAC 2 cut(s) 536, 851
Hpy188III TCNNGA 5 cut(s) 311, 421, 729, 799, 938
Hpy8I GTNNAC 2 cut(s) 536, 851
HpyCH4III ACNGT 5 cut(s) 325, 330, 453, 986, 1303
HpyCH4IV ACGT 3 cut(s) 35, 298, 427
HpyF10VI GCNNNNNNNGC 3 cut(s) 383, 415, 1166
HpySE526I ACGT 3 cut(s) 35, 298, 427
Hsp92II CATG 3 cut(s) 259, 815, 820
HspAI GCGC 1 cut(s) 150
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 6 cut(s) 97, 108, 307, 394, 562, 1126
LguI GCTCTTC 1 cut(s) 996
LmnI GCTCC 3 cut(s) 313, 661, 1011
Lsp1109I GCAGC 6 cut(s) 49, 276, 386, 396, 485, 731
LweI GCATC 5 cut(s) 361, 460, 485, 683, 798
MaeI CTAG 2 cut(s) 23, 927
MaeII ACGT 3 cut(s) 35, 298, 427
MaeIII GTNAC 2 cut(s) 609, 1297
MalI GATC 6 cut(s) 99, 110, 309, 396, 564, 1128
MboI GATC 6 cut(s) 97, 108, 307, 394, 562, 1126
MfeI CAATTG 1 cut(s) 546
MflI RGATCY 2 cut(s) 108, 394
MhlI GDGCHC 3 cut(s) 96, 538, 1008
MlsI TGGCCA 1 cut(s) 761
MluCI AATT 8 cut(s) 45, 244, 546, 582, 650, 701, 836, 919
MluI ACGCGT 1 cut(s) 15
MluNI TGGCCA 1 cut(s) 761
MlyI GAGTC 4 cut(s) 153, 629, 1052, 1188
MmeI TCCRAC 2 cut(s) 18, 1222
Mox20I TGGCCA 1 cut(s) 761
Mph1103I ATGCAT 1 cut(s) 813
MroXI GAANNNNTTC 2 cut(s) 45, 736
MscI TGGCCA 1 cut(s) 761
MseI TTAA 3 cut(s) 990, 1028, 1275
MslI CAYNNNNRTG 2 cut(s) 1068, 1277
Msp20I TGGCCA 1 cut(s) 761
MspA1I CMGCKG 2 cut(s) 409, 1169
MspCI CTTAAG 1 cut(s) 989
MspI CCGG 3 cut(s) 10, 90, 1244
MspR9I CCNGG 2 cut(s) 10, 91
MunI CAATTG 1 cut(s) 546
Mva1269I GAATGC 1 cut(s) 223
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 3 cut(s) 383, 415, 1166
NciI CCSGG 2 cut(s) 10, 91
NdeII GATC 6 cut(s) 97, 108, 307, 394, 562, 1126
NlaIII CATG 3 cut(s) 259, 815, 820
NlaIV GGNNCC 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 1297
NsiI ATGCAT 1 cut(s) 813
PaeR7I CTCGAG 2 cut(s) 669, 797
PciSI GCTCTTC 1 cut(s) 996
PcsI WCGNNNNNNNCGW 1 cut(s) 55
PctI GAATGC 1 cut(s) 223
PdmI GAANNNNTTC 2 cut(s) 45, 736
PfeI GAWTC 4 cut(s) 5, 875, 970, 1014
PinAI ACCGGT 1 cut(s) 1243
PkrI GCNGC 7 cut(s) 29, 64, 291, 376, 411, 475, 721
PleI GAGTC 4 cut(s) 153, 628, 1052, 1188
PpsI GAGTC 4 cut(s) 153, 628, 1052, 1188
Psp124BI GAGCTC 1 cut(s) 1008
Psp1406I AACGTT 2 cut(s) 35, 298
PspFI CCCAGC 2 cut(s) 275, 405
PspN4I GGNNCC 1 cut(s) 94
PspOMI GGGCCC 1 cut(s) 92
PspPI GGNCC 3 cut(s) 92, 93, 1292
PspXI VCTCGAGB 1 cut(s) 669
PstI CTGCAG 2 cut(s) 67, 294
PsuI RGATCY 2 cut(s) 108, 394
PvuII CAGCTG 2 cut(s) 409, 1169
RsaI GTAC 3 cut(s) 181, 327, 795
RsaNI GTAC 3 cut(s) 180, 326, 794
RseI CAYNNNNRTG 2 cut(s) 1068, 1277
SacI GAGCTC 1 cut(s) 1008
SapI GCTCTTC 1 cut(s) 996
SaqAI TTAA 3 cut(s) 990, 1028, 1275
SatI GCNGC 7 cut(s) 28, 63, 290, 375, 410, 474, 720
Sau3AI GATC 6 cut(s) 97, 108, 307, 394, 562, 1126
Sau96I GGNCC 3 cut(s) 92, 93, 1292
ScaI AGTACT 1 cut(s) 181
SchI GAGTC 4 cut(s) 153, 629, 1052, 1188
ScrFI CCNGG 2 cut(s) 10, 91
SduI GDGCHC 3 cut(s) 96, 538, 1008
SfaNI GCATC 5 cut(s) 361, 460, 485, 683, 798
SfcI CTRYAG 3 cut(s) 63, 290, 822
Sfr274I CTCGAG 2 cut(s) 669, 797
SlaI CTCGAG 2 cut(s) 669, 797
SmiMI CAYNNNNRTG 2 cut(s) 1068, 1277
SmlI CTYRAG 6 cut(s) 347, 419, 669, 797, 989, 1209
SmoI CTYRAG 6 cut(s) 347, 419, 669, 797, 989, 1209
Sse9I AATT 8 cut(s) 45, 244, 546, 582, 650, 701, 836, 919
SsiI CCGC 2 cut(s) 28, 1306
SspMI CTAG 2 cut(s) 23, 927
SstI GAGCTC 1 cut(s) 1008
StyD4I CCNGG 2 cut(s) 8, 89
StyI CCWWGG 1 cut(s) 1044
TaaI ACNGT 5 cut(s) 325, 330, 453, 986, 1303
TaiI ACGT 3 cut(s) 38, 301, 430
TaqI TCGA 6 cut(s) 120, 157, 457, 670, 798, 1056
TasI AATT 8 cut(s) 45, 244, 546, 582, 650, 701, 836, 919
TatI WGTACW 1 cut(s) 179
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 4 cut(s) 5, 875, 970, 1014
Tru1I TTAA 3 cut(s) 990, 1028, 1275
Tru9I TTAA 3 cut(s) 990, 1028, 1275
TscAI CASTG 2 cut(s) 968, 1308
TseFI GTSAC 1 cut(s) 1297
TseI GCWGC 6 cut(s) 62, 289, 374, 409, 473, 719
Tsp45I GTSAC 1 cut(s) 1297
TspDTI ATGAA 3 cut(s) 765, 1014, 1295
TspRI CASTG 2 cut(s) 968, 1308
Vha464I CTTAAG 1 cut(s) 989
VneI GTGCAC 1 cut(s) 534
XapI RAATTY 2 cut(s) 45, 244
XhoI CTCGAG 2 cut(s) 669, 797
XmiI GTMKAC 1 cut(s) 850
XmnI GAANNNNTTC 2 cut(s) 45, 736
XspI CTAG 2 cut(s) 23, 927
ZrmI AGTACT 1 cut(s) 181
Zsp2I ATGCAT 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.