Rmu_sc0000605.1_g000050

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000605.1
Physical Location & Seq
Reverse (-)
193713 .. 197687
3975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000605.1_g000050.1.cds

Sequence Viewer

Length: 1284 bp
atggattcccggcacgcatctctaggccgccgaacgttggaagaaattcgtcaaaagcgagctgcagaaagattgagcaaaacttcttcggggcccgatctcagccagatcccacctatcgataatggaggaatgagaaaatcggagagcgcaaatcgactctctgagataagagacttggataggaagaatgcagaactggaagaacaaaacaaaaatttggcttccatgcttgaaacaaaggaagccgggagtaatgtgctgcagaaacgtttgaatgatctggagcaaaatactgtaccgtctttgaggaaagctctcaaggatgtcgcaatggagaaagatgcagcagttgttgcacgggaggatctctctgcccagctgcgtatgctcaagaaacgtctaaaggatgcagaagaagaacagtatcgagctgaggaagatgcagcatccctgagagcagaactcaatatgatacagcaacaaacaatgaatggctcacttggtgcactaaactcaattgctaatccacctgatcagataaaaacattagaaattgagttagctaacataaagtctgagttacagcgcgagtcaatgtttagacagcaagaacaacaacaattaggagaggagcaggctcgagcatccatccttacatctgagaagcaagaattggaagaaaaacttgcagctttatctagaaagtcctcagaagtgtcagacaaagtggccagcatgggattttcattagaagacaaggagatactcgagaagcagatgcatgacatggctgtagtgattgaaaaattggaaagcagtagacaaaagcttttgatggagattgattcccaatcttcggagatagaaaggctttttgaggaaaactctaatttatctagttttcatcaggaggctatgagcatagctttgcactgggagaatcaggtgaaagactgtcttaagcaaaatgaagagctccgaggaatcttagataagttaagaactgaccaggccaaggggttgctcgactcccatagcaatggttctaacaagactggtttagctgaatacacacctgaagttctctctattaaggatcaacttgcaaaagaacagagcaaagcagaggcattatcagctgaggtattacagctctcagcaagactccaacaaaccactcaagcatacaatggtcttgcacgcctctataaaccggtgttgcgaaacatagaaagcagtctcattaagatgaaacaagatggccctgtgacagtgcggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

427

Amino Acids

48.14

Weight (kDa)

5.4

Isoelectric Point (pI)

62.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 823
AccII CGCG 1 cut(s) 591
AciI CCGC 2 cut(s) 28, 1279
AclI AACGTT 2 cut(s) 35, 271
AclWI GGATC 3 cut(s) 103, 375, 1107
AcoI YGGCCR 1 cut(s) 732
AcsI RAATTY 2 cut(s) 45, 217
AcuI CTGAAG 1 cut(s) 1101
AdeI CACNNNGTG 1 cut(s) 506
AfaI GTAC 1 cut(s) 300
AfiI CCNNNNNNNGG 3 cut(s) 37, 859, 1018
AflII CTTAAG 1 cut(s) 962
AgeI ACCGGT 1 cut(s) 1216
AgsI TTSAA 3 cut(s) 236, 277, 806
AjnI CCWGG 1 cut(s) 1011
AjuI GAANNNNNNNTTGG 2 cut(s) 659, 691
Alw21I GWGCWC 2 cut(s) 511, 981
Alw26I GTCTC 2 cut(s) 168, 1247
Alw44I GTGCAC 1 cut(s) 507
AlwI GGATC 3 cut(s) 103, 375, 1107
Ama87I CYCGRG 2 cut(s) 642, 770
AoxI GGCC 5 cut(s) 25, 92, 732, 1014, 1264
ApaI GGGCCC 1 cut(s) 96
ApaLI GTGCAC 1 cut(s) 507
ApeKI GCWGC 6 cut(s) 62, 262, 347, 382, 446, 692
ApoI RAATTY 2 cut(s) 45, 217
AsiGI ACCGGT 1 cut(s) 1216
Asp700I GAANNNNTTC 1 cut(s) 45
AspLEI GCGC 2 cut(s) 152, 591
AspS9I GGNCC 3 cut(s) 92, 93, 1265
AsuC2I CCSGG 2 cut(s) 10, 250
AsuHPI GGTGA 1 cut(s) 961
AvaI CYCGRG 2 cut(s) 642, 770
BaeGI GKGCMC 2 cut(s) 96, 511
BalI TGGCCA 1 cut(s) 734
BanII GRGCYC 2 cut(s) 96, 981
BbsI GAAGAC 1 cut(s) 762
Bbv12I GWGCWC 2 cut(s) 511, 981
BbvCI CCTCAGC 2 cut(s) 435, 1143
BbvI GCAGC 6 cut(s) 49, 249, 359, 369, 458, 704
BccI CCATC 3 cut(s) 659, 832, 1256
BciT130I CCWGG 1 cut(s) 1013
BclI TGATCA 1 cut(s) 535
BcnI CCSGG 2 cut(s) 10, 250
BcoDI GTCTC 2 cut(s) 168, 1247
BfaI CTAG 3 cut(s) 23, 702, 900
BfmI CTRYAG 3 cut(s) 63, 263, 795
BfrI CTTAAG 1 cut(s) 962
BisI GCNGC 7 cut(s) 28, 63, 263, 348, 383, 447, 693
BlsI GCNGC 7 cut(s) 29, 64, 264, 349, 384, 448, 694
Bme1390I CCNGG 3 cut(s) 10, 250, 1013
BmeT110I CYCGRG 2 cut(s) 642, 770
BmgT120I GGNCC 3 cut(s) 92, 93, 1265
BmiI GGNNCC 2 cut(s) 93, 94
BmrFI CCNGG 3 cut(s) 10, 250, 1013
BmrI ACTGGG 1 cut(s) 946
BmsI GCATC 7 cut(s) 26, 334, 400, 433, 458, 656, 771
BmuI ACTGGG 1 cut(s) 946
BpiI GAAGAC 1 cut(s) 762
BplI GAGNNNNNCTC 8 cut(s) 301, 333, 356, 388, 450, 482, 872, 904
BpmI CTGGAG 1 cut(s) 305
Bpu10I CCTNAGC 2 cut(s) 435, 1143
BpuEI CTTGAG 3 cut(s) 305, 377, 1167
BpuMI CCSGG 2 cut(s) 10, 250
Bsa29I ATCGAT 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 982, 1017
BsaWI WCCGGW 1 cut(s) 1216
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 859, 1018
Bse118I RCCGGY 1 cut(s) 1216
Bse1I ACTGG 3 cut(s) 204, 941, 1063
Bse3DI GCAATG 2 cut(s) 339, 1048
BseBI CCWGG 1 cut(s) 1013
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 982, 1017
BseGI GGATG 5 cut(s) 331, 415, 449, 647, 651
BseLI CCNNNNNNNGG 3 cut(s) 37, 859, 1018
BseMI GCAATG 2 cut(s) 339, 1048
BseMII CTCAG 9 cut(s) 115, 156, 426, 446, 570, 654, 726, 1134, 1173
BseNI ACTGG 3 cut(s) 204, 941, 1063
BseRI GAGGAG 1 cut(s) 647
BseSI GKGCMC 2 cut(s) 96, 511
BseXI GCAGC 6 cut(s) 49, 249, 359, 369, 458, 704
BseYI CCCAGC 1 cut(s) 378
Bsh1236I CGCG 1 cut(s) 591
BshFI GGCC 5 cut(s) 27, 94, 734, 1016, 1266
BshTI ACCGGT 1 cut(s) 1216
BshVI ATCGAT 1 cut(s) 120
BsiHKAI GWGCWC 2 cut(s) 511, 981
BsiHKCI CYCGRG 2 cut(s) 642, 770
BsiSI CCGG 3 cut(s) 10, 249, 1217
BslI CCNNNNNNNGG 3 cut(s) 37, 859, 1018
BsmAI GTCTC 2 cut(s) 168, 1247
BsmI GAATGC 1 cut(s) 196
BsnI GGCC 5 cut(s) 27, 94, 734, 1016, 1266
BsoBI CYCGRG 2 cut(s) 642, 770
Bsp120I GGGCCC 1 cut(s) 92
Bsp1286I GDGCHC 3 cut(s) 96, 511, 981
Bsp143I GATC 6 cut(s) 97, 108, 280, 367, 535, 1099
BspACI CCGC 2 cut(s) 28, 1279
BspANI GGCC 5 cut(s) 27, 94, 734, 1016, 1266
BspCNI CTCAG 9 cut(s) 114, 157, 427, 447, 571, 655, 725, 1135, 1172
BspDI ATCGAT 1 cut(s) 120
BspFNI CGCG 1 cut(s) 591
BspLI GGNNCC 2 cut(s) 93, 94
BspMAI CTGCAG 2 cut(s) 67, 267
BspPI GGATC 3 cut(s) 103, 375, 1107
BspQI GCTCTTC 1 cut(s) 969
BspTI CTTAAG 1 cut(s) 962
BsrDI GCAATG 2 cut(s) 339, 1048
BsrFI RCCGGY 1 cut(s) 1216
BsrI ACTGG 3 cut(s) 204, 941, 1063
BssAI RCCGGY 1 cut(s) 1216
BssECI CCNNGG 2 cut(s) 982, 1017
BssMI GATC 6 cut(s) 97, 108, 280, 367, 535, 1099
BssT1I CCWWGG 1 cut(s) 1017
Bst2UI CCWGG 1 cut(s) 1013
Bst4CI ACNGT 5 cut(s) 298, 303, 426, 959, 1276
Bst6I CTCTTC 1 cut(s) 969
BstAFI CTTAAG 1 cut(s) 962
BstAPI GCANNNNNTGC 1 cut(s) 356
BstC8I GCNNGC 5 cut(s) 15, 60, 639, 736, 1204
BstF5I GGATG 5 cut(s) 331, 415, 449, 647, 651
BstFNI CGCG 1 cut(s) 591
BstHHI GCGC 2 cut(s) 152, 591
BstKTI GATC 6 cut(s) 100, 111, 283, 370, 538, 1102
BstMAI GTCTC 2 cut(s) 168, 1247
BstMBI GATC 6 cut(s) 97, 108, 280, 367, 535, 1099
BstMWI GCNNNNNNNGC 3 cut(s) 356, 388, 1139
BstNI CCWGG 1 cut(s) 1013
BstSCI CCNGG 3 cut(s) 8, 248, 1011
BstSFI CTRYAG 3 cut(s) 63, 263, 795
BstSLI GKGCMC 2 cut(s) 96, 511
BstUI CGCG 1 cut(s) 591
BstV1I GCAGC 6 cut(s) 49, 249, 359, 369, 458, 704
BstV2I GAAGAC 1 cut(s) 762
BstX2I RGATCY 2 cut(s) 108, 367
BstXI CCANNNNNNTGG 1 cut(s) 1043
BstYI RGATCY 2 cut(s) 108, 367
Bsu15I ATCGAT 1 cut(s) 120
BsuRI GGCC 5 cut(s) 27, 94, 734, 1016, 1266
BsuTUI ATCGAT 1 cut(s) 120
BtsCI GGATG 5 cut(s) 331, 415, 449, 647, 651
BtsIMutI CAGTG 2 cut(s) 934, 1281
Cac8I GCNNGC 5 cut(s) 15, 60, 639, 736, 1204
CfoI GCGC 2 cut(s) 152, 591
Cfr10I RCCGGY 1 cut(s) 1216
Cfr13I GGNCC 3 cut(s) 92, 93, 1265
ClaI ATCGAT 1 cut(s) 120
Csp6I GTAC 1 cut(s) 299
CspAI ACCGGT 1 cut(s) 1216
CviAII CATG 4 cut(s) 229, 739, 785, 790
CviQI GTAC 1 cut(s) 299
DpnI GATC 6 cut(s) 99, 110, 282, 369, 537, 1101
DpnII GATC 6 cut(s) 97, 108, 280, 367, 535, 1099
DraIII CACNNNGTG 1 cut(s) 506
EaeI YGGCCR 1 cut(s) 732
Eam1104I CTCTTC 1 cut(s) 969
EarI CTCTTC 1 cut(s) 969
Ecl136II GAGCTC 1 cut(s) 979
Eco130I CCWWGG 1 cut(s) 1017
Eco24I GRGCYC 2 cut(s) 96, 981
Eco53kI GAGCTC 1 cut(s) 979
Eco57I CTGAAG 1 cut(s) 1101
Eco88I CYCGRG 2 cut(s) 642, 770
EcoICRI GAGCTC 1 cut(s) 979
EcoO109I RGGNCCY 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 1011
EcoT14I CCWWGG 1 cut(s) 1017
EcoT22I ATGCAT 1 cut(s) 786
EcoT38I GRGCYC 2 cut(s) 96, 981
ErhI CCWWGG 1 cut(s) 1017
FaeI CATG 4 cut(s) 232, 742, 788, 793
FalI AAGNNNNNCTT 4 cut(s) 672, 704, 945, 977
FatI CATG 4 cut(s) 228, 738, 784, 789
FbaI TGATCA 1 cut(s) 535
FblI GTMKAC 1 cut(s) 823
Fnu4HI GCNGC 7 cut(s) 28, 63, 263, 348, 383, 447, 693
FokI GGATG 5 cut(s) 338, 422, 436, 634, 638
FriOI GRGCYC 2 cut(s) 96, 981
Fsp4HI GCNGC 7 cut(s) 28, 63, 263, 348, 383, 447, 693
FspBI CTAG 3 cut(s) 23, 702, 900
GlaI GCGC 2 cut(s) 151, 590
GluI GCNGC 7 cut(s) 28, 63, 263, 348, 383, 447, 693
GsaI CCCAGC 1 cut(s) 382
GsuI CTGGAG 1 cut(s) 305
HaeIII GGCC 5 cut(s) 27, 94, 734, 1016, 1266
HapII CCGG 3 cut(s) 10, 249, 1217
HhaI GCGC 2 cut(s) 152, 591
Hin1II CATG 4 cut(s) 232, 742, 788, 793
Hin6I GCGC 2 cut(s) 150, 589
HinP1I GCGC 2 cut(s) 150, 589
HindIII AAGCTT 1 cut(s) 830
HinfI GANTC 8 cut(s) 5, 159, 593, 848, 943, 987, 1031, 1167
HpaII CCGG 3 cut(s) 10, 249, 1217
HphI GGTGA 1 cut(s) 961
Hpy166II GTNNAC 2 cut(s) 509, 824
Hpy188I TCNGA 9 cut(s) 145, 166, 540, 580, 664, 715, 724, 862, 983
Hpy188III TCNNGA 5 cut(s) 284, 394, 702, 772, 911
Hpy8I GTNNAC 2 cut(s) 509, 824
HpyCH4III ACNGT 5 cut(s) 298, 303, 426, 959, 1276
HpyCH4IV ACGT 3 cut(s) 35, 271, 400
HpyF10VI GCNNNNNNNGC 3 cut(s) 356, 388, 1139
HpySE526I ACGT 3 cut(s) 35, 271, 400
Hsp92II CATG 4 cut(s) 232, 742, 788, 793
HspAI GCGC 2 cut(s) 150, 589
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 6 cut(s) 97, 108, 280, 367, 535, 1099
LguI GCTCTTC 1 cut(s) 969
LmnI GCTCC 3 cut(s) 286, 634, 984
Lsp1109I GCAGC 6 cut(s) 49, 249, 359, 369, 458, 704
LweI GCATC 7 cut(s) 26, 334, 400, 433, 458, 656, 771
MaeI CTAG 3 cut(s) 23, 702, 900
MaeII ACGT 3 cut(s) 35, 271, 400
MaeIII GTNAC 2 cut(s) 582, 1270
MalI GATC 6 cut(s) 99, 110, 282, 369, 537, 1101
MboI GATC 6 cut(s) 97, 108, 280, 367, 535, 1099
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 2 cut(s) 108, 367
MhlI GDGCHC 3 cut(s) 96, 511, 981
MlsI TGGCCA 1 cut(s) 734
MluCI AATT 8 cut(s) 45, 217, 519, 555, 623, 674, 809, 892
MluNI TGGCCA 1 cut(s) 734
MlyI GAGTC 4 cut(s) 153, 602, 1025, 1161
MmeI TCCRAC 2 cut(s) 18, 1195
Mox20I TGGCCA 1 cut(s) 734
Mph1103I ATGCAT 1 cut(s) 786
MroXI GAANNNNTTC 1 cut(s) 45
MscI TGGCCA 1 cut(s) 734
MseI TTAA 4 cut(s) 963, 1001, 1095, 1248
MslI CAYNNNNRTG 2 cut(s) 1041, 1250
Msp20I TGGCCA 1 cut(s) 734
MspA1I CMGCKG 2 cut(s) 382, 1142
MspCI CTTAAG 1 cut(s) 962
MspI CCGG 3 cut(s) 10, 249, 1217
MspR9I CCNGG 3 cut(s) 10, 250, 1013
MunI CAATTG 1 cut(s) 519
Mva1269I GAATGC 1 cut(s) 196
MvaI CCWGG 1 cut(s) 1013
MvnI CGCG 1 cut(s) 591
MwoI GCNNNNNNNGC 3 cut(s) 356, 388, 1139
NciI CCSGG 2 cut(s) 10, 250
NdeII GATC 6 cut(s) 97, 108, 280, 367, 535, 1099
NlaIII CATG 4 cut(s) 232, 742, 788, 793
NlaIV GGNNCC 2 cut(s) 93, 94
NmuCI GTSAC 1 cut(s) 1270
NsiI ATGCAT 1 cut(s) 786
PaeR7I CTCGAG 2 cut(s) 642, 770
PciSI GCTCTTC 1 cut(s) 969
PcsI WCGNNNNNNNCGW 1 cut(s) 55
PctI GAATGC 1 cut(s) 196
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 4 cut(s) 5, 848, 943, 987
PinAI ACCGGT 1 cut(s) 1216
PkrI GCNGC 7 cut(s) 29, 64, 264, 349, 384, 448, 694
PleI GAGTC 4 cut(s) 153, 601, 1025, 1161
PpsI GAGTC 4 cut(s) 153, 601, 1025, 1161
Psp124BI GAGCTC 1 cut(s) 981
Psp1406I AACGTT 2 cut(s) 35, 271
Psp6I CCWGG 1 cut(s) 1011
PspFI CCCAGC 1 cut(s) 378
PspGI CCWGG 1 cut(s) 1011
PspN4I GGNNCC 2 cut(s) 93, 94
PspOMI GGGCCC 1 cut(s) 92
PspPI GGNCC 3 cut(s) 92, 93, 1265
PspXI VCTCGAGB 1 cut(s) 642
PstI CTGCAG 2 cut(s) 67, 267
PsuI RGATCY 2 cut(s) 108, 367
PvuII CAGCTG 2 cut(s) 382, 1142
RsaI GTAC 1 cut(s) 300
RsaNI GTAC 1 cut(s) 299
RseI CAYNNNNRTG 2 cut(s) 1041, 1250
SacI GAGCTC 1 cut(s) 981
SapI GCTCTTC 1 cut(s) 969
SaqAI TTAA 4 cut(s) 963, 1001, 1095, 1248
SatI GCNGC 7 cut(s) 28, 63, 263, 348, 383, 447, 693
Sau3AI GATC 6 cut(s) 97, 108, 280, 367, 535, 1099
Sau96I GGNCC 3 cut(s) 92, 93, 1265
SchI GAGTC 4 cut(s) 153, 602, 1025, 1161
ScrFI CCNGG 3 cut(s) 10, 250, 1013
SduI GDGCHC 3 cut(s) 96, 511, 981
SfaNI GCATC 7 cut(s) 26, 334, 400, 433, 458, 656, 771
SfcI CTRYAG 3 cut(s) 63, 263, 795
Sfr274I CTCGAG 2 cut(s) 642, 770
SlaI CTCGAG 2 cut(s) 642, 770
SmiMI CAYNNNNRTG 2 cut(s) 1041, 1250
SmlI CTYRAG 6 cut(s) 320, 392, 642, 770, 962, 1182
SmoI CTYRAG 6 cut(s) 320, 392, 642, 770, 962, 1182
Sse9I AATT 8 cut(s) 45, 217, 519, 555, 623, 674, 809, 892
SsiI CCGC 2 cut(s) 28, 1279
SspMI CTAG 3 cut(s) 23, 702, 900
SstI GAGCTC 1 cut(s) 981
StyD4I CCNGG 3 cut(s) 8, 248, 1011
StyI CCWWGG 1 cut(s) 1017
TaaI ACNGT 5 cut(s) 298, 303, 426, 959, 1276
TaiI ACGT 3 cut(s) 38, 274, 403
TaqI TCGA 6 cut(s) 120, 157, 430, 643, 771, 1029
TasI AATT 8 cut(s) 45, 217, 519, 555, 623, 674, 809, 892
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 4 cut(s) 5, 848, 943, 987
Tru1I TTAA 4 cut(s) 963, 1001, 1095, 1248
Tru9I TTAA 4 cut(s) 963, 1001, 1095, 1248
TscAI CASTG 2 cut(s) 941, 1281
TseFI GTSAC 1 cut(s) 1270
TseI GCWGC 6 cut(s) 62, 262, 347, 382, 446, 692
Tsp45I GTSAC 1 cut(s) 1270
TspDTI ATGAA 5 cut(s) 506, 738, 896, 987, 1268
TspRI CASTG 2 cut(s) 941, 1281
Vha464I CTTAAG 1 cut(s) 962
VneI GTGCAC 1 cut(s) 507
XapI RAATTY 2 cut(s) 45, 217
XbaI TCTAGA 1 cut(s) 701
XhoI CTCGAG 2 cut(s) 642, 770
XmiI GTMKAC 1 cut(s) 823
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 3 cut(s) 23, 702, 900
Zsp2I ATGCAT 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.