Rw5G040960

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
72320276 .. 72325151
4876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G040960.1

Sequence Viewer

Length: 1290 bp
ATGAATTTGAAATCGTCATGTCTGGAATCGAAACAAACCAAAACAGAGAGCCAGAAACGCCGTGCAGTGGCTGAAGAGGGAATGATAAGAGACTTGGATAGGAAGAATGCAGAACTGGAAGAACAAAACAAAAATTTGGCTTCCATGCTTGAAACAAAGGAAGCCGGGAGTAATGTGCTGCAGAAACGTTTGAATGATCTGGAGCAAAATACTGTACCGTCTTTGAGGAAAGCTCTCAAGGATGTCGCAATGGAGAAAGATGCAGCAGTTGTTGCACGGTCCCTCACAGTTTGGTTTCTTAGTGTAGGAGGATCTCTCTGCTCAGAACTCAATATGATACAGCAACAAACAATGAGTGGCTCACTTGGTGCACTAAACTCAATTGCTAATCCACCTGATCAGATAAAAACATTAGAAATTGAGTTAGCTAACATAAAGTCTGAGTTACAGCGCAAGTCAATGTTTAGACAGCAAGAACGACAACAATTAGGAGAGGAGCAGGCTCGAGCATCCATCCTTACATCTGAGAAGCAAGAATTGGAAGAAAAACTTGCAGCTTTGTCTAGAAAGTCCTCAGAAGTGTCAGACAAAGTGGCCAGCATGGGATTTTCATTAGAAGACAAGGAGGTACTCGAGAAGCAGATGCATGACATGGCTGTAGTGATTGAAAAATTGGAAAGCAGTAGACAAAAGCTTTTGATGGAGATTGATTCTCAATCTTCGGAGATAGAAAGGCTTTTTGAGGAAAACTCTAATTTATCTAGTTCTCATCAGGAGGCTATGAGCATAGCTTTGCACTGGGAGAATCAGGTGAAAGACTGTCTTAAGCAAAATGAAGAGCTCCGAGGAATCTTAGATAAGTTAAGAACTGACCAGGCCAAGGGGTTGCTCGACTCCCATAGCAATGGTTCGAACAAGACTGGTTTAGCTGAATATACACCTGAAGTTCTCTCTATCAAGGATCAACTTGCAAAAGAACAGAGCAAAGCAGAGGCATTATCAGCTGAGGTATTACAGCTCTCAGCAAGACTCCAACAAACCACTCAAGCATACAATGGTCTTGCACGCCTCTATAAACCGGTGTTGCGAAACATAGAAAGCAGTCTCATTAAGATGAAACAAGATGGCCCTGATCGACAGTGCGGTAAATACAAAACTCTTGCACTACCCGTTTACATAAAGTTGGTGGAATTAGCATGTTTTTGTTCTTTAATTTTCGTAATTGTGCTCGGCATCCTTCATGTAACAAAATGTTCACTAGCCAAAACAAGGTATCCAAATCTTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

429

Amino Acids

48.12

Weight (kDa)

6.4

Isoelectric Point (pI)

58.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 685
AciI CCGC 1 cut(s) 1143
AclI AACGTT 1 cut(s) 187
AclWI GGATC 2 cut(s) 319, 969
AcoI YGGCCR 1 cut(s) 594
AcsI RAATTY 2 cut(s) 4, 133
AcuI CTGAAG 2 cut(s) 93, 963
AdeI CACNNNGTG 1 cut(s) 368
AfaI GTAC 2 cut(s) 216, 630
AfiI CCNNNNNNNGG 3 cut(s) 67, 880, 1269
AflII CTTAAG 1 cut(s) 824
AgeI ACCGGT 1 cut(s) 1078
AgsI TTSAA 4 cut(s) 10, 152, 193, 668
AjnI CCWGG 1 cut(s) 873
AjuI GAANNNNNNNTTGG 2 cut(s) 521, 553
AluBI AGCT 9 cut(s) 233, 428, 557, 694, 791, 841, 929, 1004, 1018
AluI AGCT 9 cut(s) 233, 428, 557, 694, 791, 841, 929, 1004, 1018
Alw21I GWGCWC 3 cut(s) 373, 843, 1230
Alw26I GTCTC 2 cut(s) 84, 1109
Alw44I GTGCAC 1 cut(s) 369
AlwI GGATC 2 cut(s) 319, 969
AlwNI CAGNNNCTG 1 cut(s) 71
Ama87I CYCGRG 2 cut(s) 504, 632
AoxI GGCC 3 cut(s) 594, 876, 1126
ApaLI GTGCAC 1 cut(s) 369
ApeKI GCWGC 3 cut(s) 178, 263, 554
ApoI RAATTY 2 cut(s) 4, 133
AsiGI ACCGGT 1 cut(s) 1078
AspLEI GCGC 1 cut(s) 453
AspS9I GGNCC 2 cut(s) 279, 1127
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 823
AsuII TTCGAA 1 cut(s) 911
AvaI CYCGRG 2 cut(s) 504, 632
AvaII GGWCC 1 cut(s) 279
BaeGI GKGCMC 1 cut(s) 373
BalI TGGCCA 1 cut(s) 596
BanII GRGCYC 1 cut(s) 843
BbsI GAAGAC 1 cut(s) 624
Bbv12I GWGCWC 3 cut(s) 373, 843, 1230
BbvCI CCTCAGC 1 cut(s) 1005
BbvI GCAGC 3 cut(s) 165, 275, 566
BccI CCATC 3 cut(s) 521, 694, 1118
BceAI ACGGC 1 cut(s) 45
BciT130I CCWGG 1 cut(s) 875
BciVI GTATCC 1 cut(s) 1284
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 2 cut(s) 84, 1109
BfaI CTAG 3 cut(s) 564, 762, 1259
BfmI CTRYAG 2 cut(s) 179, 657
BfrI CTTAAG 1 cut(s) 824
BfuI GTATCC 1 cut(s) 1284
BisI GCNGC 3 cut(s) 179, 264, 555
BlsI GCNGC 3 cut(s) 180, 265, 556
Bme1390I CCNGG 2 cut(s) 166, 875
Bme18I GGWCC 1 cut(s) 279
BmeT110I CYCGRG 2 cut(s) 504, 632
BmgT120I GGNCC 2 cut(s) 279, 1127
BmiI GGNNCC 1 cut(s) 281
BmrFI CCNGG 2 cut(s) 166, 875
BmrI ACTGGG 1 cut(s) 808
BmsI GCATC 4 cut(s) 250, 518, 633, 1242
BmuI ACTGGG 1 cut(s) 808
BpiI GAAGAC 1 cut(s) 624
BplI GAGNNNNNCTC 6 cut(s) 217, 249, 300, 332, 734, 766
BpmI CTGGAG 1 cut(s) 221
Bpu10I CCTNAGC 1 cut(s) 1005
Bpu14I TTCGAA 1 cut(s) 911
BpuEI CTTGAG 2 cut(s) 221, 1029
BpuMI CCSGG 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 844, 879
BsaWI WCCGGW 1 cut(s) 1078
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 880, 1269
Bse118I RCCGGY 1 cut(s) 1078
Bse1I ACTGG 3 cut(s) 120, 803, 925
Bse3DI GCAATG 2 cut(s) 255, 910
BseBI CCWGG 1 cut(s) 875
BseDI CCNNGG 2 cut(s) 844, 879
BseGI GGATG 4 cut(s) 247, 509, 513, 1233
BseLI CCNNNNNNNGG 3 cut(s) 67, 880, 1269
BseMI GCAATG 2 cut(s) 255, 910
BseMII CTCAG 6 cut(s) 336, 432, 516, 588, 996, 1035
BseNI ACTGG 3 cut(s) 120, 803, 925
BseRI GAGGAG 1 cut(s) 509
BseSI GKGCMC 1 cut(s) 373
BseXI GCAGC 3 cut(s) 165, 275, 566
BsgI GTGCAG 1 cut(s) 84
BshFI GGCC 3 cut(s) 596, 878, 1128
BshTI ACCGGT 1 cut(s) 1078
BsiHKAI GWGCWC 3 cut(s) 373, 843, 1230
BsiHKCI CYCGRG 2 cut(s) 504, 632
BsiSI CCGG 2 cut(s) 165, 1079
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 3 cut(s) 67, 880, 1269
BsmAI GTCTC 2 cut(s) 84, 1109
BsmFI GGGAC 1 cut(s) 265
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 3 cut(s) 596, 878, 1128
BsoBI CYCGRG 2 cut(s) 504, 632
Bsp119I TTCGAA 1 cut(s) 911
Bsp1286I GDGCHC 3 cut(s) 373, 843, 1230
Bsp143I GATC 5 cut(s) 196, 311, 397, 961, 1132
BspACI CCGC 1 cut(s) 1143
BspANI GGCC 3 cut(s) 596, 878, 1128
BspCNI CTCAG 6 cut(s) 335, 433, 517, 587, 997, 1034
BspLI GGNNCC 1 cut(s) 281
BspMAI CTGCAG 1 cut(s) 183
BspPI GGATC 2 cut(s) 319, 969
BspQI GCTCTTC 1 cut(s) 831
BspT104I TTCGAA 1 cut(s) 911
BspTI CTTAAG 1 cut(s) 824
BsrDI GCAATG 2 cut(s) 255, 910
BsrFI RCCGGY 1 cut(s) 1078
BsrI ACTGG 3 cut(s) 120, 803, 925
BssAI RCCGGY 1 cut(s) 1078
BssECI CCNNGG 2 cut(s) 844, 879
BssMI GATC 5 cut(s) 196, 311, 397, 961, 1132
BssT1I CCWWGG 1 cut(s) 879
Bst2UI CCWGG 1 cut(s) 875
Bst4CI ACNGT 6 cut(s) 214, 219, 279, 289, 821, 1140
Bst6I CTCTTC 2 cut(s) 69, 831
BstAFI CTTAAG 1 cut(s) 824
BstAPI GCANNNNNTGC 1 cut(s) 272
BstBI TTCGAA 1 cut(s) 911
BstC8I GCNNGC 3 cut(s) 501, 598, 1066
BstDEI CTNAG 8 cut(s) 299, 322, 441, 525, 574, 853, 1005, 1021
BstF5I GGATG 4 cut(s) 247, 509, 513, 1233
BstHHI GCGC 1 cut(s) 453
BstKTI GATC 5 cut(s) 199, 314, 400, 964, 1135
BstMAI GTCTC 2 cut(s) 84, 1109
BstMBI GATC 5 cut(s) 196, 311, 397, 961, 1132
BstMWI GCNNNNNNNGC 3 cut(s) 57, 272, 1001
BstNI CCWGG 1 cut(s) 875
BstNSI RCATGY 1 cut(s) 1200
BstSCI CCNGG 2 cut(s) 164, 873
BstSFI CTRYAG 2 cut(s) 179, 657
BstSLI GKGCMC 1 cut(s) 373
BstV1I GCAGC 3 cut(s) 165, 275, 566
BstV2I GAAGAC 1 cut(s) 624
BstX2I RGATCY 1 cut(s) 311
BstXI CCANNNNNNTGG 1 cut(s) 905
BstYI RGATCY 1 cut(s) 311
BsuI GTATCC 1 cut(s) 1284
BsuRI GGCC 3 cut(s) 596, 878, 1128
BtsCI GGATG 4 cut(s) 247, 509, 513, 1233
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 4 cut(s) 72, 796, 1145, 1285
Cac8I GCNNGC 3 cut(s) 501, 598, 1066
CaiI CAGNNNCTG 1 cut(s) 71
CfoI GCGC 1 cut(s) 453
Cfr10I RCCGGY 1 cut(s) 1078
Cfr13I GGNCC 2 cut(s) 279, 1127
Csp6I GTAC 2 cut(s) 215, 629
CspAI ACCGGT 1 cut(s) 1078
CviAII CATG 7 cut(s) 18, 145, 601, 647, 652, 1197, 1241
CviQI GTAC 2 cut(s) 215, 629
DdeI CTNAG 8 cut(s) 299, 322, 441, 525, 574, 853, 1005, 1021
DpnI GATC 5 cut(s) 198, 313, 399, 963, 1134
DpnII GATC 5 cut(s) 196, 311, 397, 961, 1132
DraIII CACNNNGTG 1 cut(s) 368
EaeI YGGCCR 1 cut(s) 594
Eam1104I CTCTTC 2 cut(s) 69, 831
EarI CTCTTC 2 cut(s) 69, 831
Ecl136II GAGCTC 1 cut(s) 841
Eco130I CCWWGG 1 cut(s) 879
Eco24I GRGCYC 1 cut(s) 843
Eco47I GGWCC 1 cut(s) 279
Eco53kI GAGCTC 1 cut(s) 841
Eco57I CTGAAG 2 cut(s) 93, 963
Eco88I CYCGRG 2 cut(s) 504, 632
EcoICRI GAGCTC 1 cut(s) 841
EcoRII CCWGG 1 cut(s) 873
EcoT14I CCWWGG 1 cut(s) 879
EcoT22I ATGCAT 1 cut(s) 648
EcoT38I GRGCYC 1 cut(s) 843
ErhI CCWWGG 1 cut(s) 879
FaeI CATG 7 cut(s) 21, 148, 604, 650, 655, 1200, 1244
FalI AAGNNNNNCTT 4 cut(s) 534, 566, 807, 839
FaqI GGGAC 1 cut(s) 265
FatI CATG 7 cut(s) 17, 144, 600, 646, 651, 1196, 1240
FbaI TGATCA 1 cut(s) 397
FblI GTMKAC 1 cut(s) 685
Fnu4HI GCNGC 3 cut(s) 179, 264, 555
FokI GGATG 4 cut(s) 254, 496, 500, 1220
FriOI GRGCYC 1 cut(s) 843
Fsp4HI GCNGC 3 cut(s) 179, 264, 555
FspBI CTAG 3 cut(s) 564, 762, 1259
GlaI GCGC 1 cut(s) 452
GluI GCNGC 3 cut(s) 179, 264, 555
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 3 cut(s) 596, 878, 1128
HapII CCGG 2 cut(s) 165, 1079
HhaI GCGC 1 cut(s) 453
Hin1II CATG 7 cut(s) 21, 148, 604, 650, 655, 1200, 1244
Hin6I GCGC 1 cut(s) 451
HinP1I GCGC 1 cut(s) 451
HindIII AAGCTT 1 cut(s) 692
HinfI GANTC 6 cut(s) 26, 710, 805, 849, 893, 1029
HpaII CCGG 2 cut(s) 165, 1079
HphI GGTGA 1 cut(s) 823
Hpy166II GTNNAC 4 cut(s) 371, 686, 1174, 1256
Hpy188I TCNGA 8 cut(s) 325, 402, 442, 526, 577, 586, 724, 845
Hpy188III TCNNGA 5 cut(s) 23, 200, 564, 634, 773
Hpy8I GTNNAC 4 cut(s) 371, 686, 1174, 1256
HpyAV CCTTC 1 cut(s) 1247
HpyCH4III ACNGT 6 cut(s) 214, 219, 279, 289, 821, 1140
HpyCH4IV ACGT 1 cut(s) 187
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 272, 1001
HpyF3I CTNAG 8 cut(s) 299, 322, 441, 525, 574, 853, 1005, 1021
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 7 cut(s) 21, 148, 604, 650, 655, 1200, 1244
HspAI GCGC 1 cut(s) 451
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 5 cut(s) 196, 311, 397, 961, 1132
LguI GCTCTTC 1 cut(s) 831
LmnI GCTCC 3 cut(s) 202, 496, 846
Lsp1109I GCAGC 3 cut(s) 165, 275, 566
LweI GCATC 4 cut(s) 250, 518, 633, 1242
MaeI CTAG 3 cut(s) 564, 762, 1259
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 2 cut(s) 444, 1243
MalI GATC 5 cut(s) 198, 313, 399, 963, 1134
MboI GATC 5 cut(s) 196, 311, 397, 961, 1132
MboII GAAGA 8 cut(s) 86, 115, 131, 554, 629, 711, 848, 1274
MfeI CAATTG 1 cut(s) 381
MflI RGATCY 1 cut(s) 311
MhlI GDGCHC 3 cut(s) 373, 843, 1230
MlsI TGGCCA 1 cut(s) 596
MluNI TGGCCA 1 cut(s) 596
MlyI GAGTC 2 cut(s) 887, 1023
MmeI TCCRAC 1 cut(s) 1057
Mox20I TGGCCA 1 cut(s) 596
Mph1103I ATGCAT 1 cut(s) 648
MscI TGGCCA 1 cut(s) 596
MseI TTAA 4 cut(s) 825, 863, 1110, 1211
MslI CAYNNNNRTG 2 cut(s) 903, 1112
Msp20I TGGCCA 1 cut(s) 596
MspA1I CMGCKG 1 cut(s) 1004
MspCI CTTAAG 1 cut(s) 824
MspI CCGG 2 cut(s) 165, 1079
MspR9I CCNGG 2 cut(s) 166, 875
MunI CAATTG 1 cut(s) 381
Mva1269I GAATGC 1 cut(s) 112
MvaI CCWGG 1 cut(s) 875
MwoI GCNNNNNNNGC 3 cut(s) 57, 272, 1001
NciI CCSGG 1 cut(s) 166
NdeII GATC 5 cut(s) 196, 311, 397, 961, 1132
NlaIII CATG 7 cut(s) 21, 148, 604, 650, 655, 1200, 1244
NlaIV GGNNCC 1 cut(s) 281
NmeAIII GCCGAG 1 cut(s) 1209
NsiI ATGCAT 1 cut(s) 648
NspI RCATGY 1 cut(s) 1200
NspV TTCGAA 1 cut(s) 911
PaeR7I CTCGAG 2 cut(s) 504, 632
PciSI GCTCTTC 1 cut(s) 831
PctI GAATGC 1 cut(s) 112
PfeI GAWTC 4 cut(s) 26, 710, 805, 849
PinAI ACCGGT 1 cut(s) 1078
PkrI GCNGC 3 cut(s) 180, 265, 556
PleI GAGTC 2 cut(s) 887, 1023
PpsI GAGTC 2 cut(s) 887, 1023
Psp124BI GAGCTC 1 cut(s) 843
Psp1406I AACGTT 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 873
PspGI CCWGG 1 cut(s) 873
PspN4I GGNNCC 1 cut(s) 281
PspPI GGNCC 2 cut(s) 279, 1127
PspXI VCTCGAGB 1 cut(s) 504
PstI CTGCAG 1 cut(s) 183
PstNI CAGNNNCTG 1 cut(s) 71
PsuI RGATCY 1 cut(s) 311
PvuII CAGCTG 1 cut(s) 1004
RsaI GTAC 2 cut(s) 216, 630
RsaNI GTAC 2 cut(s) 215, 629
RseI CAYNNNNRTG 2 cut(s) 903, 1112
SacI GAGCTC 1 cut(s) 843
SapI GCTCTTC 1 cut(s) 831
SaqAI TTAA 4 cut(s) 825, 863, 1110, 1211
SatI GCNGC 3 cut(s) 179, 264, 555
Sau3AI GATC 5 cut(s) 196, 311, 397, 961, 1132
Sau96I GGNCC 2 cut(s) 279, 1127
SchI GAGTC 2 cut(s) 887, 1023
ScrFI CCNGG 2 cut(s) 166, 875
SduI GDGCHC 3 cut(s) 373, 843, 1230
SfaNI GCATC 4 cut(s) 250, 518, 633, 1242
SfcI CTRYAG 2 cut(s) 179, 657
Sfr274I CTCGAG 2 cut(s) 504, 632
SfuI TTCGAA 1 cut(s) 911
SinI GGWCC 1 cut(s) 279
SlaI CTCGAG 2 cut(s) 504, 632
SmiMI CAYNNNNRTG 2 cut(s) 903, 1112
SmlI CTYRAG 5 cut(s) 236, 504, 632, 824, 1044
SmoI CTYRAG 5 cut(s) 236, 504, 632, 824, 1044
SsiI CCGC 1 cut(s) 1143
SspMI CTAG 3 cut(s) 564, 762, 1259
SstI GAGCTC 1 cut(s) 843
StyD4I CCNGG 2 cut(s) 164, 873
StyI CCWWGG 1 cut(s) 879
TaaI ACNGT 6 cut(s) 214, 219, 279, 289, 821, 1140
TaiI ACGT 1 cut(s) 190
TaqI TCGA 6 cut(s) 29, 505, 633, 891, 911, 1135
TfiI GAWTC 4 cut(s) 26, 710, 805, 849
Tru1I TTAA 4 cut(s) 825, 863, 1110, 1211
Tru9I TTAA 4 cut(s) 825, 863, 1110, 1211
TscAI CASTG 3 cut(s) 72, 803, 1145
TseI GCWGC 3 cut(s) 178, 263, 554
TspDTI ATGAA 5 cut(s) 17, 600, 849, 1130, 1229
TspRI CASTG 3 cut(s) 72, 803, 1145
Vha464I CTTAAG 1 cut(s) 824
VneI GTGCAC 1 cut(s) 369
VpaK11BI GGWCC 1 cut(s) 279
XapI RAATTY 2 cut(s) 4, 133
XbaI TCTAGA 1 cut(s) 563
XceI RCATGY 1 cut(s) 1200
XhoI CTCGAG 2 cut(s) 504, 632
XmiI GTMKAC 1 cut(s) 685
XspI CTAG 3 cut(s) 564, 762, 1259
Zsp2I ATGCAT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.