Rroxscaffold_1G00014360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004466
Physical Location & Seq
Forward (+)
17695563 .. 17699232
3670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00014360.1

Sequence Viewer

Length: 1164 bp
ATGGATTCCCGGCACGCATCTCTAGGCCGCCGAACGATAAGAGACTTGGATAGGAAGAATGCAGAACTGGAAGAACAAATTAAAAATTTGGCTTCCATGCTTGAAACAAAGGAAGCCGGAAGTAATGTACTGCAGCAACGTTTGAATGATCTGGAGCAAAATACTGTACCGTCTTTGAGGAAAGCTCTCAAGGATGTCTCAATGGAGAAAGATGCAGCAGTTGTTGCACGGGAGGATCTCTCTGCTCAGCTGCGTATGCTCAAGAAACGTCTAAAGGACGCAGAAGAAGAACAGTATCGAGCTGAGGAAGATGCAGCATCCCTGAGAGCAGAACTCAATATGATACAGCAACAAACAATGAGTGGCTCACTTGGTGCACTAAACTCAATTGCTAATCCACCTGATCAGATAAAAACATTAGAAATTGAGTTGGCTAACATAAAGTCTGAGTTACAGCGAGAGTCAATGTTTAGACAGCAAGAACGACAGCAATTAGCAGAGGAGCAGGCTCGAGCATCCATCCTTACATCTGAGAAGCAAGAATTGGAAGAAAAGCTGGCAGCTTTGTCTAGAAAGTCTTCAGAAGTGTCAGACAAAGTGGCCAGCAAGGGATTTTCAGTCGAAGACAAGGAGATACTCGAGAAGCAGATGCAGAACATGGCTGTAGTGATTGAGAAATTGGAAAGCAGTAGACAAAAGCTTTTAATGGAGATTGATTCCCAATCTTCGGAGATAGAAAGGCTTTTTGAGGAAAACTCTAATTTATCTAGTTCTCTTCAGGAGGCTATGAGTATAGCTCTGCATTGGGAGAATCAGACTTCTGTTCCGGGAGTAGAAATCAGTTTTATATACGTGCTCATCTATTTTGTTTTGCTTATTGCCCCTAATGTAAACGTGCCGGTGAAAGACTGTCTTAAGCAAAATGAAGAGCTCCGAGGAATCTTAGATGAGTTAAGAACTGACCAGGCCAAGGGGTTACTCGACTCCCATAGCAATGGCTCTAACAAGACTGGTTTAGCTGAATATACACCTGAAGTTCTCCCTATCAAGGATCAACTTGCAAAAGAACAGAGCAAAGCAGAGGCATTATCAGCTGAGGTCTTACAGCTCTCAGCAAGACTCCAACAAACCACTCAAGCATACAATGGGCTTGCACGCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

387

Amino Acids

43.54

Weight (kDa)

5.0

Isoelectric Point (pI)

58.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 691
AciI CCGC 1 cut(s) 28
AclI AACGTT 1 cut(s) 139
AclWI GGATC 2 cut(s) 243, 1059
AcoI YGGCCR 1 cut(s) 600
AcsI RAATTY 1 cut(s) 85
AcuI CTGAAG 3 cut(s) 564, 761, 1053
AdeI CACNNNGTG 1 cut(s) 374
AfaI GTAC 2 cut(s) 129, 168
AfiI CCNNNNNNNGG 3 cut(s) 727, 970, 1048
AflII CTTAAG 1 cut(s) 914
AgsI TTSAA 2 cut(s) 104, 145
AjnI CCWGG 1 cut(s) 963
AjuI GAANNNNNNNTTGG 2 cut(s) 527, 559
Alw21I GWGCWC 3 cut(s) 379, 858, 933
Alw26I GTCTC 2 cut(s) 36, 202
Alw44I GTGCAC 1 cut(s) 375
AlwI GGATC 2 cut(s) 243, 1059
Ama87I CYCGRG 2 cut(s) 510, 638
AoxI GGCC 3 cut(s) 25, 600, 966
ApaLI GTGCAC 1 cut(s) 375
ApeKI GCWGC 5 cut(s) 133, 215, 250, 314, 560
ApoI RAATTY 1 cut(s) 85
Asp700I GAANNNNTTC 1 cut(s) 577
AsuC2I CCSGG 2 cut(s) 10, 828
AsuHPI GGTGA 1 cut(s) 913
AvaI CYCGRG 2 cut(s) 510, 638
BaeGI GKGCMC 1 cut(s) 379
BalI TGGCCA 1 cut(s) 602
BanII GRGCYC 1 cut(s) 933
BbsI GAAGAC 2 cut(s) 570, 630
Bbv12I GWGCWC 3 cut(s) 379, 858, 933
BbvCI CCTCAGC 2 cut(s) 303, 1095
BbvI GCAGC 5 cut(s) 145, 227, 237, 326, 572
BccI CCATC 1 cut(s) 527
BciT130I CCWGG 1 cut(s) 965
BclI TGATCA 1 cut(s) 403
BcnI CCSGG 2 cut(s) 10, 828
BcoDI GTCTC 2 cut(s) 36, 202
BfaI CTAG 3 cut(s) 23, 570, 768
BfmI CTRYAG 2 cut(s) 131, 663
BfrI CTTAAG 1 cut(s) 914
BisI GCNGC 6 cut(s) 28, 134, 216, 251, 315, 561
BlpI GCTNAGC 1 cut(s) 246
BlsI GCNGC 6 cut(s) 29, 135, 217, 252, 316, 562
Bme1390I CCNGG 3 cut(s) 10, 828, 965
BmeT110I CYCGRG 2 cut(s) 510, 638
BmrFI CCNGG 3 cut(s) 10, 828, 965
BmsI GCATC 6 cut(s) 26, 202, 301, 326, 524, 639
BpiI GAAGAC 2 cut(s) 570, 630
BpmI CTGGAG 1 cut(s) 173
Bpu10I CCTNAGC 2 cut(s) 303, 1095
Bpu1102I GCTNAGC 1 cut(s) 246
BpuEI CTTGAG 3 cut(s) 173, 245, 1119
BpuMI CCSGG 2 cut(s) 10, 828
BsaAI YACGTR 1 cut(s) 853
BsaJI CCNNGG 2 cut(s) 934, 969
Bsc4I CCNNNNNNNGG 3 cut(s) 727, 970, 1048
Bse118I RCCGGY 1 cut(s) 898
Bse1I ACTGG 2 cut(s) 72, 1015
Bse3DI GCAATG 1 cut(s) 1000
BseBI CCWGG 1 cut(s) 965
BseDI CCNNGG 2 cut(s) 934, 969
BseGI GGATG 4 cut(s) 199, 317, 515, 519
BseLI CCNNNNNNNGG 3 cut(s) 727, 970, 1048
BseMI GCAATG 1 cut(s) 1000
BseMII CTCAG 7 cut(s) 260, 294, 314, 438, 522, 1086, 1125
BseNI ACTGG 2 cut(s) 72, 1015
BseRI GAGGAG 1 cut(s) 515
BseSI GKGCMC 1 cut(s) 379
BseXI GCAGC 5 cut(s) 145, 227, 237, 326, 572
BshFI GGCC 3 cut(s) 27, 602, 968
BsiHKAI GWGCWC 3 cut(s) 379, 858, 933
BsiHKCI CYCGRG 2 cut(s) 510, 638
BsiSI CCGG 4 cut(s) 10, 117, 827, 899
BslI CCNNNNNNNGG 3 cut(s) 727, 970, 1048
BsmAI GTCTC 2 cut(s) 36, 202
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 3 cut(s) 27, 602, 968
BsoBI CYCGRG 2 cut(s) 510, 638
Bsp1286I GDGCHC 3 cut(s) 379, 858, 933
Bsp143I GATC 4 cut(s) 148, 235, 403, 1051
Bsp1720I GCTNAGC 1 cut(s) 246
BspACI CCGC 1 cut(s) 28
BspANI GGCC 3 cut(s) 27, 602, 968
BspCNI CTCAG 7 cut(s) 259, 295, 315, 439, 523, 1087, 1124
BspMAI CTGCAG 1 cut(s) 135
BspPI GGATC 2 cut(s) 243, 1059
BspQI GCTCTTC 1 cut(s) 921
BspTI CTTAAG 1 cut(s) 914
BsrDI GCAATG 1 cut(s) 1000
BsrFI RCCGGY 1 cut(s) 898
BsrI ACTGG 2 cut(s) 72, 1015
BssAI RCCGGY 1 cut(s) 898
BssECI CCNNGG 2 cut(s) 934, 969
BssMI GATC 4 cut(s) 148, 235, 403, 1051
BssT1I CCWWGG 1 cut(s) 969
Bst2UI CCWGG 1 cut(s) 965
Bst4CI ACNGT 4 cut(s) 166, 171, 294, 911
Bst6I CTCTTC 2 cut(s) 780, 921
BstAFI CTTAAG 1 cut(s) 914
BstAPI GCANNNNNTGC 1 cut(s) 224
BstBAI YACGTR 1 cut(s) 853
BstC8I GCNNGC 6 cut(s) 15, 507, 558, 604, 1152, 1156
BstDEI CTNAG 8 cut(s) 246, 303, 323, 447, 531, 943, 1095, 1111
BstF5I GGATG 4 cut(s) 199, 317, 515, 519
BstKTI GATC 4 cut(s) 151, 238, 406, 1054
BstMAI GTCTC 2 cut(s) 36, 202
BstMBI GATC 4 cut(s) 148, 235, 403, 1051
BstMWI GCNNNNNNNGC 3 cut(s) 224, 256, 1091
BstNI CCWGG 1 cut(s) 965
BstSCI CCNGG 3 cut(s) 8, 826, 963
BstSFI CTRYAG 2 cut(s) 131, 663
BstSLI GKGCMC 1 cut(s) 379
BstV1I GCAGC 5 cut(s) 145, 227, 237, 326, 572
BstV2I GAAGAC 2 cut(s) 570, 630
BstX2I RGATCY 1 cut(s) 235
BstXI CCANNNNNNTGG 1 cut(s) 995
BstYI RGATCY 1 cut(s) 235
BsuRI GGCC 3 cut(s) 27, 602, 968
BtsCI GGATG 4 cut(s) 199, 317, 515, 519
Cac8I GCNNGC 6 cut(s) 15, 507, 558, 604, 1152, 1156
Cfr10I RCCGGY 1 cut(s) 898
CseI GACGC 1 cut(s) 287
Csp6I GTAC 2 cut(s) 128, 167
CviAII CATG 2 cut(s) 97, 658
CviQI GTAC 2 cut(s) 128, 167
DdeI CTNAG 8 cut(s) 246, 303, 323, 447, 531, 943, 1095, 1111
DpnI GATC 4 cut(s) 150, 237, 405, 1053
DpnII GATC 4 cut(s) 148, 235, 403, 1051
DraIII CACNNNGTG 1 cut(s) 374
EaeI YGGCCR 1 cut(s) 600
Eam1104I CTCTTC 2 cut(s) 780, 921
EarI CTCTTC 2 cut(s) 780, 921
Ecl136II GAGCTC 1 cut(s) 931
Eco130I CCWWGG 1 cut(s) 969
Eco24I GRGCYC 1 cut(s) 933
Eco53kI GAGCTC 1 cut(s) 931
Eco57I CTGAAG 3 cut(s) 564, 761, 1053
Eco88I CYCGRG 2 cut(s) 510, 638
EcoICRI GAGCTC 1 cut(s) 931
EcoRII CCWGG 1 cut(s) 963
EcoT14I CCWWGG 1 cut(s) 969
EcoT38I GRGCYC 1 cut(s) 933
ErhI CCWWGG 1 cut(s) 969
FaeI CATG 2 cut(s) 100, 661
FalI AAGNNNNNCTT 2 cut(s) 897, 929
FatI CATG 2 cut(s) 96, 657
FbaI TGATCA 1 cut(s) 403
FblI GTMKAC 1 cut(s) 691
Fnu4HI GCNGC 6 cut(s) 28, 134, 216, 251, 315, 561
FokI GGATG 4 cut(s) 206, 304, 502, 506
FriOI GRGCYC 1 cut(s) 933
Fsp4HI GCNGC 6 cut(s) 28, 134, 216, 251, 315, 561
FspBI CTAG 3 cut(s) 23, 570, 768
GluI GCNGC 6 cut(s) 28, 134, 216, 251, 315, 561
GsuI CTGGAG 1 cut(s) 173
HaeIII GGCC 3 cut(s) 27, 602, 968
HapII CCGG 4 cut(s) 10, 117, 827, 899
HgaI GACGC 1 cut(s) 287
Hin1II CATG 2 cut(s) 100, 661
HindIII AAGCTT 1 cut(s) 698
HinfI GANTC 7 cut(s) 5, 461, 716, 811, 939, 983, 1119
HpaII CCGG 4 cut(s) 10, 117, 827, 899
HphI GGTGA 1 cut(s) 913
Hpy166II GTNNAC 3 cut(s) 377, 692, 892
Hpy188I TCNGA 8 cut(s) 408, 448, 532, 583, 592, 730, 816, 935
Hpy188III TCNNGA 5 cut(s) 152, 262, 570, 640, 779
Hpy8I GTNNAC 3 cut(s) 377, 692, 892
HpyCH4III ACNGT 4 cut(s) 166, 171, 294, 911
HpyCH4IV ACGT 4 cut(s) 139, 268, 852, 894
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 256, 1091
HpyF3I CTNAG 8 cut(s) 246, 303, 323, 447, 531, 943, 1095, 1111
HpySE526I ACGT 4 cut(s) 139, 268, 852, 894
Hsp92II CATG 2 cut(s) 100, 661
Ksp22I TGATCA 1 cut(s) 403
Kzo9I GATC 4 cut(s) 148, 235, 403, 1051
LguI GCTCTTC 1 cut(s) 921
LmnI GCTCC 3 cut(s) 154, 502, 936
Lsp1109I GCAGC 5 cut(s) 145, 227, 237, 326, 572
LweI GCATC 6 cut(s) 26, 202, 301, 326, 524, 639
MaeI CTAG 3 cut(s) 23, 570, 768
MaeII ACGT 4 cut(s) 139, 268, 852, 894
MaeIII GTNAC 2 cut(s) 450, 975
MalI GATC 4 cut(s) 150, 237, 405, 1053
MboI GATC 4 cut(s) 148, 235, 403, 1051
MfeI CAATTG 1 cut(s) 387
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 3 cut(s) 379, 858, 933
MlsI TGGCCA 1 cut(s) 602
MluCI AATT 8 cut(s) 78, 85, 387, 423, 491, 542, 677, 760
MluNI TGGCCA 1 cut(s) 602
MlyI GAGTC 3 cut(s) 470, 977, 1113
MmeI TCCRAC 1 cut(s) 1147
MnlI CCTC 9 cut(s) 171, 226, 298, 493, 742, 775, 929, 1075, 1090
Mox20I TGGCCA 1 cut(s) 602
MroXI GAANNNNTTC 1 cut(s) 577
MscI TGGCCA 1 cut(s) 602
MseI TTAA 4 cut(s) 81, 704, 915, 953
MslI CAYNNNNRTG 1 cut(s) 993
Msp20I TGGCCA 1 cut(s) 602
MspA1I CMGCKG 2 cut(s) 250, 1094
MspCI CTTAAG 1 cut(s) 914
MspI CCGG 4 cut(s) 10, 117, 827, 899
MspR9I CCNGG 3 cut(s) 10, 828, 965
MunI CAATTG 1 cut(s) 387
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 1 cut(s) 965
MwoI GCNNNNNNNGC 3 cut(s) 224, 256, 1091
NciI CCSGG 2 cut(s) 10, 828
NdeII GATC 4 cut(s) 148, 235, 403, 1051
NlaIII CATG 2 cut(s) 100, 661
PaeR7I CTCGAG 2 cut(s) 510, 638
PciSI GCTCTTC 1 cut(s) 921
PctI GAATGC 1 cut(s) 64
PdmI GAANNNNTTC 1 cut(s) 577
PfeI GAWTC 4 cut(s) 5, 716, 811, 939
PfoI TCCNGGA 1 cut(s) 826
PkrI GCNGC 6 cut(s) 29, 135, 217, 252, 316, 562
PleI GAGTC 3 cut(s) 469, 977, 1113
PpsI GAGTC 3 cut(s) 469, 977, 1113
Ppu21I YACGTR 1 cut(s) 853
Psp124BI GAGCTC 1 cut(s) 933
Psp1406I AACGTT 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 963
PspGI CCWGG 1 cut(s) 963
PspXI VCTCGAGB 1 cut(s) 510
PstI CTGCAG 1 cut(s) 135
PsuI RGATCY 1 cut(s) 235
PvuII CAGCTG 2 cut(s) 250, 1094
RsaI GTAC 2 cut(s) 129, 168
RsaNI GTAC 2 cut(s) 128, 167
RseI CAYNNNNRTG 1 cut(s) 993
SacI GAGCTC 1 cut(s) 933
SapI GCTCTTC 1 cut(s) 921
SaqAI TTAA 4 cut(s) 81, 704, 915, 953
SatI GCNGC 6 cut(s) 28, 134, 216, 251, 315, 561
Sau3AI GATC 4 cut(s) 148, 235, 403, 1051
SchI GAGTC 3 cut(s) 470, 977, 1113
ScrFI CCNGG 3 cut(s) 10, 828, 965
SduI GDGCHC 3 cut(s) 379, 858, 933
SfaNI GCATC 6 cut(s) 26, 202, 301, 326, 524, 639
SfcI CTRYAG 2 cut(s) 131, 663
Sfr274I CTCGAG 2 cut(s) 510, 638
SlaI CTCGAG 2 cut(s) 510, 638
SmiMI CAYNNNNRTG 1 cut(s) 993
SmlI CTYRAG 6 cut(s) 188, 260, 510, 638, 914, 1134
SmoI CTYRAG 6 cut(s) 188, 260, 510, 638, 914, 1134
Sse9I AATT 8 cut(s) 78, 85, 387, 423, 491, 542, 677, 760
SsiI CCGC 1 cut(s) 28
SspMI CTAG 3 cut(s) 23, 570, 768
SstI GAGCTC 1 cut(s) 933
StyD4I CCNGG 3 cut(s) 8, 826, 963
StyI CCWWGG 1 cut(s) 969
TaaI ACNGT 4 cut(s) 166, 171, 294, 911
TaiI ACGT 4 cut(s) 142, 271, 855, 897
TaqI TCGA 5 cut(s) 298, 511, 621, 639, 981
TasI AATT 8 cut(s) 78, 85, 387, 423, 491, 542, 677, 760
TatI WGTACW 1 cut(s) 127
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 4 cut(s) 5, 716, 811, 939
Tru1I TTAA 4 cut(s) 81, 704, 915, 953
Tru9I TTAA 4 cut(s) 81, 704, 915, 953
TseI GCWGC 5 cut(s) 133, 215, 250, 314, 560
TspDTI ATGAA 1 cut(s) 939
Vha464I CTTAAG 1 cut(s) 914
VneI GTGCAC 1 cut(s) 375
XapI RAATTY 1 cut(s) 85
XbaI TCTAGA 1 cut(s) 569
XhoI CTCGAG 2 cut(s) 510, 638
XmiI GTMKAC 1 cut(s) 691
XmnI GAANNNNTTC 1 cut(s) 577
XspI CTAG 3 cut(s) 23, 570, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.