Rh5CG476300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004466
Physical Location & Seq
Reverse (-)
66516221 .. 66520153
3933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG476300.1

Sequence Viewer

Length: 1185 bp
ATGATAAGAGACTTGGATAGGAAGAATGCAGAACTGGAAGAACAAAACAAAAATTTGGCTTCCATGCTTGAAACAAAGGAAGCCGGGAGTAATGTGCTGCAGAAACGTTTGAATGATCTGGAGCAAAATACTGTACCGTCTTTGAGGAAAGCTCTCAAGGATGTCGCAATGGAGAAAGATGCAGCAGTTGTTGCATGGGAGGATCTCTCTGCTCAGGTGCAACTCAATATGATACAGCAACAAACAATGAGTGGCTCACTTGGTGCACTAAACTCAATTGCTAATCCACCTGATCAGATAAAAACATTAGAAATTGAGTTAGCTAACATAAAGTCTGAGTTACAGCGTGAGTCAATGTTTAGACAGCAAGAACGACAACAATTAGGAGAGGAGCAGGCTCGAGCATCCATCCTTACATCTGAGAAGCAAGAATTGGAAGAAAAACTTGCAGCTTTGTCTAGAAAGTCCTCAGAAGTGTCAGACAAAGTGGCCAGCATGGGATTTTCATTAGAAGACAAGGAGGTACTCGAGAAGCAGATGCATGACATGGCTGTAGTGATTGAAAAATTGGAAAGCAGTAGACAAAAGCTTTTGATGGAGATTGATTCTCAATCTTCGGAGATAGAAAGGCTTTTTGAGGAAAACTCTAATTTATCTAGTTCTCATCAGGAGGCTATGAGCATAGCTTTGCACTGGGAGAATCAGGTGAAAGACTGTCTTAAGCAAAATGAAGAGCTCCGAGGAATCTTAGATAAGTTAAGAACTGACCAGGCCAAGGGGTTGCTCGACTCCCATAGCAATGGTTCGAACAAGACTGGTTTAGCTGAATATACACCTGAAGTTCTCTCTATCAAGGATCAACTTGCAAAAGAACAGAGCAAAGCAGAGGCATTATCAGCTGAGGTATTACAGCTCTCAGCAAGACTCCAACAAACCACTCAAGCATACAATGGTCTTGCACGCCTCTATAAACCGGTGTTGCGAAACATAGAAAGCAGTCTCATTAAGATGAAACAAGATGGCCCTGATCGACAGTGCGGTAAATACAAAACTCTTGCACTACCCGTTTACATAAAGTTGGTGGAATTAGCATGTTTTTGTTCTTTAATTTTCGTAATTGTGCTCGGCATCCTTCATGTACCAAAATGTTCACTAGCCAAAACAAGGTATCCAAATCTTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

394

Amino Acids

44.33

Weight (kDa)

5.54

Isoelectric Point (pI)

55.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 580
AciI CCGC 1 cut(s) 1038
AclI AACGTT 1 cut(s) 106
AclWI GGATC 2 cut(s) 210, 864
AcoI YGGCCR 1 cut(s) 489
AcsI RAATTY 1 cut(s) 52
AcuI CTGAAG 1 cut(s) 858
AdeI CACNNNGTG 1 cut(s) 263
AfaI GTAC 3 cut(s) 135, 525, 1140
AfiI CCNNNNNNNGG 2 cut(s) 775, 1164
AflII CTTAAG 1 cut(s) 719
AgeI ACCGGT 1 cut(s) 973
AgsI TTSAA 3 cut(s) 71, 112, 563
AjnI CCWGG 1 cut(s) 768
AjuI GAANNNNNNNTTGG 2 cut(s) 416, 448
AluBI AGCT 9 cut(s) 152, 323, 452, 589, 686, 736, 824, 899, 913
AluI AGCT 9 cut(s) 152, 323, 452, 589, 686, 736, 824, 899, 913
Alw21I GWGCWC 3 cut(s) 268, 738, 1125
Alw26I GTCTC 2 cut(s) 3, 1004
Alw44I GTGCAC 1 cut(s) 264
AlwI GGATC 2 cut(s) 210, 864
Ama87I CYCGRG 2 cut(s) 399, 527
AoxI GGCC 3 cut(s) 489, 771, 1021
ApaLI GTGCAC 1 cut(s) 264
ApeKI GCWGC 3 cut(s) 97, 182, 449
ApoI RAATTY 1 cut(s) 52
AsiGI ACCGGT 1 cut(s) 973
AspS9I GGNCC 1 cut(s) 1022
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 718
AsuII TTCGAA 1 cut(s) 806
AvaI CYCGRG 2 cut(s) 399, 527
BaeGI GKGCMC 1 cut(s) 268
BalI TGGCCA 1 cut(s) 491
BanII GRGCYC 1 cut(s) 738
BbsI GAAGAC 1 cut(s) 519
Bbv12I GWGCWC 3 cut(s) 268, 738, 1125
BbvCI CCTCAGC 1 cut(s) 900
BbvI GCAGC 3 cut(s) 84, 194, 461
BccI CCATC 3 cut(s) 416, 589, 1013
BciT130I CCWGG 1 cut(s) 770
BciVI GTATCC 1 cut(s) 1179
BclI TGATCA 1 cut(s) 292
BcnI CCSGG 1 cut(s) 85
BcoDI GTCTC 2 cut(s) 3, 1004
BfaI CTAG 3 cut(s) 459, 657, 1154
BfmI CTRYAG 2 cut(s) 98, 552
BfrI CTTAAG 1 cut(s) 719
BfuI GTATCC 1 cut(s) 1179
BisI GCNGC 3 cut(s) 98, 183, 450
BlsI GCNGC 3 cut(s) 99, 184, 451
Bme1390I CCNGG 2 cut(s) 85, 770
BmeT110I CYCGRG 2 cut(s) 399, 527
BmgT120I GGNCC 1 cut(s) 1022
BmrFI CCNGG 2 cut(s) 85, 770
BmrI ACTGGG 1 cut(s) 703
BmsI GCATC 4 cut(s) 169, 413, 528, 1137
BmuI ACTGGG 1 cut(s) 703
BpiI GAAGAC 1 cut(s) 519
BplI GAGNNNNNCTC 6 cut(s) 136, 168, 191, 223, 629, 661
BpmI CTGGAG 1 cut(s) 140
Bpu10I CCTNAGC 2 cut(s) 213, 900
Bpu14I TTCGAA 1 cut(s) 806
BpuEI CTTGAG 2 cut(s) 140, 924
BpuMI CCSGG 1 cut(s) 85
BsaJI CCNNGG 2 cut(s) 739, 774
BsaWI WCCGGW 1 cut(s) 973
Bsc4I CCNNNNNNNGG 2 cut(s) 775, 1164
Bse118I RCCGGY 1 cut(s) 973
Bse1I ACTGG 3 cut(s) 39, 698, 820
Bse3DI GCAATG 2 cut(s) 174, 805
BseBI CCWGG 1 cut(s) 770
BseDI CCNNGG 2 cut(s) 739, 774
BseGI GGATG 4 cut(s) 166, 404, 408, 1128
BseLI CCNNNNNNNGG 2 cut(s) 775, 1164
BseMI GCAATG 2 cut(s) 174, 805
BseMII CTCAG 6 cut(s) 227, 327, 411, 483, 891, 930
BseNI ACTGG 3 cut(s) 39, 698, 820
BseRI GAGGAG 1 cut(s) 404
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 3 cut(s) 84, 194, 461
BshFI GGCC 3 cut(s) 491, 773, 1023
BshTI ACCGGT 1 cut(s) 973
BsiHKAI GWGCWC 3 cut(s) 268, 738, 1125
BsiHKCI CYCGRG 2 cut(s) 399, 527
BsiSI CCGG 2 cut(s) 84, 974
BslI CCNNNNNNNGG 2 cut(s) 775, 1164
BsmAI GTCTC 2 cut(s) 3, 1004
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 3 cut(s) 491, 773, 1023
BsoBI CYCGRG 2 cut(s) 399, 527
Bsp119I TTCGAA 1 cut(s) 806
Bsp1286I GDGCHC 3 cut(s) 268, 738, 1125
Bsp143I GATC 5 cut(s) 115, 202, 292, 856, 1027
BspACI CCGC 1 cut(s) 1038
BspANI GGCC 3 cut(s) 491, 773, 1023
BspCNI CTCAG 6 cut(s) 226, 328, 412, 482, 892, 929
BspMAI CTGCAG 1 cut(s) 102
BspPI GGATC 2 cut(s) 210, 864
BspQI GCTCTTC 1 cut(s) 726
BspT104I TTCGAA 1 cut(s) 806
BspTI CTTAAG 1 cut(s) 719
BsrDI GCAATG 2 cut(s) 174, 805
BsrFI RCCGGY 1 cut(s) 973
BsrI ACTGG 3 cut(s) 39, 698, 820
BssAI RCCGGY 1 cut(s) 973
BssECI CCNNGG 2 cut(s) 739, 774
BssMI GATC 5 cut(s) 115, 202, 292, 856, 1027
BssT1I CCWWGG 1 cut(s) 774
Bst2UI CCWGG 1 cut(s) 770
Bst4CI ACNGT 4 cut(s) 133, 138, 716, 1035
Bst6I CTCTTC 1 cut(s) 726
BstAFI CTTAAG 1 cut(s) 719
BstAPI GCANNNNNTGC 1 cut(s) 191
BstBI TTCGAA 1 cut(s) 806
BstC8I GCNNGC 3 cut(s) 396, 493, 961
BstDEI CTNAG 7 cut(s) 213, 336, 420, 469, 748, 900, 916
BstF5I GGATG 4 cut(s) 166, 404, 408, 1128
BstKTI GATC 5 cut(s) 118, 205, 295, 859, 1030
BstMAI GTCTC 2 cut(s) 3, 1004
BstMBI GATC 5 cut(s) 115, 202, 292, 856, 1027
BstMWI GCNNNNNNNGC 2 cut(s) 191, 896
BstNI CCWGG 1 cut(s) 770
BstNSI RCATGY 1 cut(s) 1095
BstSCI CCNGG 2 cut(s) 83, 768
BstSFI CTRYAG 2 cut(s) 98, 552
BstSLI GKGCMC 1 cut(s) 268
BstV1I GCAGC 3 cut(s) 84, 194, 461
BstV2I GAAGAC 1 cut(s) 519
BstX2I RGATCY 1 cut(s) 202
BstXI CCANNNNNNTGG 1 cut(s) 800
BstYI RGATCY 1 cut(s) 202
BsuI GTATCC 1 cut(s) 1179
BsuRI GGCC 3 cut(s) 491, 773, 1023
BtsCI GGATG 4 cut(s) 166, 404, 408, 1128
BtsIMutI CAGTG 3 cut(s) 691, 1040, 1180
Cac8I GCNNGC 3 cut(s) 396, 493, 961
Cfr10I RCCGGY 1 cut(s) 973
Cfr13I GGNCC 1 cut(s) 1022
Csp6I GTAC 3 cut(s) 134, 524, 1139
CspAI ACCGGT 1 cut(s) 973
CviAII CATG 7 cut(s) 64, 195, 496, 542, 547, 1092, 1136
CviQI GTAC 3 cut(s) 134, 524, 1139
DdeI CTNAG 7 cut(s) 213, 336, 420, 469, 748, 900, 916
DpnI GATC 5 cut(s) 117, 204, 294, 858, 1029
DpnII GATC 5 cut(s) 115, 202, 292, 856, 1027
DraIII CACNNNGTG 1 cut(s) 263
EaeI YGGCCR 1 cut(s) 489
Eam1104I CTCTTC 1 cut(s) 726
EarI CTCTTC 1 cut(s) 726
Ecl136II GAGCTC 1 cut(s) 736
Eco130I CCWWGG 1 cut(s) 774
Eco24I GRGCYC 1 cut(s) 738
Eco53kI GAGCTC 1 cut(s) 736
Eco57I CTGAAG 1 cut(s) 858
Eco88I CYCGRG 2 cut(s) 399, 527
EcoICRI GAGCTC 1 cut(s) 736
EcoRII CCWGG 1 cut(s) 768
EcoT14I CCWWGG 1 cut(s) 774
EcoT22I ATGCAT 1 cut(s) 543
EcoT38I GRGCYC 1 cut(s) 738
ErhI CCWWGG 1 cut(s) 774
FaeI CATG 7 cut(s) 67, 198, 499, 545, 550, 1095, 1139
FalI AAGNNNNNCTT 4 cut(s) 429, 461, 702, 734
FatI CATG 7 cut(s) 63, 194, 495, 541, 546, 1091, 1135
FbaI TGATCA 1 cut(s) 292
FblI GTMKAC 1 cut(s) 580
Fnu4HI GCNGC 3 cut(s) 98, 183, 450
FokI GGATG 4 cut(s) 173, 391, 395, 1115
FriOI GRGCYC 1 cut(s) 738
Fsp4HI GCNGC 3 cut(s) 98, 183, 450
FspBI CTAG 3 cut(s) 459, 657, 1154
GluI GCNGC 3 cut(s) 98, 183, 450
GsuI CTGGAG 1 cut(s) 140
HaeIII GGCC 3 cut(s) 491, 773, 1023
HapII CCGG 2 cut(s) 84, 974
Hin1II CATG 7 cut(s) 67, 198, 499, 545, 550, 1095, 1139
HindIII AAGCTT 1 cut(s) 587
HinfI GANTC 6 cut(s) 350, 605, 700, 744, 788, 924
HpaII CCGG 2 cut(s) 84, 974
HphI GGTGA 1 cut(s) 718
Hpy166II GTNNAC 4 cut(s) 266, 581, 1069, 1151
Hpy188I TCNGA 7 cut(s) 297, 337, 421, 472, 481, 619, 740
Hpy188III TCNNGA 4 cut(s) 119, 459, 529, 668
Hpy8I GTNNAC 4 cut(s) 266, 581, 1069, 1151
HpyAV CCTTC 1 cut(s) 1142
HpyCH4III ACNGT 4 cut(s) 133, 138, 716, 1035
HpyCH4IV ACGT 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 896
HpyF3I CTNAG 7 cut(s) 213, 336, 420, 469, 748, 900, 916
HpySE526I ACGT 1 cut(s) 106
Hsp92II CATG 7 cut(s) 67, 198, 499, 545, 550, 1095, 1139
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 5 cut(s) 115, 202, 292, 856, 1027
LguI GCTCTTC 1 cut(s) 726
LmnI GCTCC 3 cut(s) 121, 391, 741
Lsp1109I GCAGC 3 cut(s) 84, 194, 461
LweI GCATC 4 cut(s) 169, 413, 528, 1137
MaeI CTAG 3 cut(s) 459, 657, 1154
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 339
MalI GATC 5 cut(s) 117, 204, 294, 858, 1029
MboI GATC 5 cut(s) 115, 202, 292, 856, 1027
MboII GAAGA 7 cut(s) 34, 50, 449, 524, 606, 743, 1169
MfeI CAATTG 1 cut(s) 276
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 3 cut(s) 268, 738, 1125
MlsI TGGCCA 1 cut(s) 491
MluNI TGGCCA 1 cut(s) 491
MlyI GAGTC 3 cut(s) 359, 782, 918
MmeI TCCRAC 1 cut(s) 952
Mox20I TGGCCA 1 cut(s) 491
Mph1103I ATGCAT 1 cut(s) 543
MscI TGGCCA 1 cut(s) 491
MseI TTAA 4 cut(s) 720, 758, 1005, 1106
MslI CAYNNNNRTG 2 cut(s) 798, 1007
Msp20I TGGCCA 1 cut(s) 491
MspA1I CMGCKG 1 cut(s) 899
MspCI CTTAAG 1 cut(s) 719
MspI CCGG 2 cut(s) 84, 974
MspR9I CCNGG 2 cut(s) 85, 770
MunI CAATTG 1 cut(s) 276
Mva1269I GAATGC 1 cut(s) 31
MvaI CCWGG 1 cut(s) 770
MwoI GCNNNNNNNGC 2 cut(s) 191, 896
NciI CCSGG 1 cut(s) 85
NdeII GATC 5 cut(s) 115, 202, 292, 856, 1027
NlaIII CATG 7 cut(s) 67, 198, 499, 545, 550, 1095, 1139
NmeAIII GCCGAG 1 cut(s) 1104
NsiI ATGCAT 1 cut(s) 543
NspI RCATGY 1 cut(s) 1095
NspV TTCGAA 1 cut(s) 806
PaeR7I CTCGAG 2 cut(s) 399, 527
PciSI GCTCTTC 1 cut(s) 726
PctI GAATGC 1 cut(s) 31
PfeI GAWTC 3 cut(s) 605, 700, 744
PinAI ACCGGT 1 cut(s) 973
PkrI GCNGC 3 cut(s) 99, 184, 451
PleI GAGTC 3 cut(s) 358, 782, 918
PpsI GAGTC 3 cut(s) 358, 782, 918
Psp124BI GAGCTC 1 cut(s) 738
Psp1406I AACGTT 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 768
PspGI CCWGG 1 cut(s) 768
PspPI GGNCC 1 cut(s) 1022
PspXI VCTCGAGB 1 cut(s) 399
PstI CTGCAG 1 cut(s) 102
PsuI RGATCY 1 cut(s) 202
PvuII CAGCTG 1 cut(s) 899
RsaI GTAC 3 cut(s) 135, 525, 1140
RsaNI GTAC 3 cut(s) 134, 524, 1139
RseI CAYNNNNRTG 2 cut(s) 798, 1007
SacI GAGCTC 1 cut(s) 738
SapI GCTCTTC 1 cut(s) 726
SaqAI TTAA 4 cut(s) 720, 758, 1005, 1106
SatI GCNGC 3 cut(s) 98, 183, 450
Sau3AI GATC 5 cut(s) 115, 202, 292, 856, 1027
Sau96I GGNCC 1 cut(s) 1022
SchI GAGTC 3 cut(s) 359, 782, 918
ScrFI CCNGG 2 cut(s) 85, 770
SduI GDGCHC 3 cut(s) 268, 738, 1125
SfaNI GCATC 4 cut(s) 169, 413, 528, 1137
SfcI CTRYAG 2 cut(s) 98, 552
Sfr274I CTCGAG 2 cut(s) 399, 527
SfuI TTCGAA 1 cut(s) 806
SlaI CTCGAG 2 cut(s) 399, 527
SmiMI CAYNNNNRTG 2 cut(s) 798, 1007
SmlI CTYRAG 5 cut(s) 155, 399, 527, 719, 939
SmoI CTYRAG 5 cut(s) 155, 399, 527, 719, 939
SsiI CCGC 1 cut(s) 1038
SspMI CTAG 3 cut(s) 459, 657, 1154
SstI GAGCTC 1 cut(s) 738
StyD4I CCNGG 2 cut(s) 83, 768
StyI CCWWGG 1 cut(s) 774
TaaI ACNGT 4 cut(s) 133, 138, 716, 1035
TaiI ACGT 1 cut(s) 109
TaqI TCGA 5 cut(s) 400, 528, 786, 806, 1030
TfiI GAWTC 3 cut(s) 605, 700, 744
Tru1I TTAA 4 cut(s) 720, 758, 1005, 1106
Tru9I TTAA 4 cut(s) 720, 758, 1005, 1106
TscAI CASTG 2 cut(s) 698, 1040
TseI GCWGC 3 cut(s) 97, 182, 449
TspDTI ATGAA 4 cut(s) 495, 744, 1025, 1124
TspRI CASTG 2 cut(s) 698, 1040
Vha464I CTTAAG 1 cut(s) 719
VneI GTGCAC 1 cut(s) 264
XapI RAATTY 1 cut(s) 52
XbaI TCTAGA 1 cut(s) 458
XceI RCATGY 1 cut(s) 1095
XhoI CTCGAG 2 cut(s) 399, 527
XmiI GTMKAC 1 cut(s) 580
XspI CTAG 3 cut(s) 459, 657, 1154
Zsp2I ATGCAT 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.