Rroxscaffold_1G00014340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004466
Physical Location & Seq
Forward (+)
17655057 .. 17659227
4171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00014340.1

Sequence Viewer

Length: 1137 bp
ATGAAACCTAGTGCCGCCAGTTATAGTTCGATCAACAACATAGTGGGAAAGCGGTTTAATTGTTGTATGGCTTTATATGAGCTTTATCTTTCCGATAATGGAGGAATGAGAAAATCGGAGAGCGCGAATCGACTCTCTGAGAGCGATGTTAGTACTTTCGTTTCTCAGATAAGAGACTTGGATAGGAAGAATGCAGAACTGGAAGAACAAAACAAAAATTTGGCTTCCATGCTTGAAACAAAGGAAGCCGGGACTACTGTACTGCAGAAACGCTTGAATGATCTGCAAAATACTGTACCATCTTTGAGGAAAGCTCTCAAGGATGTCGCAATGGAGAAAGATGCAGCAGTTGTTGCACGGGAGGATCTCTCAGCCCAGCTGCGTATGCTCAAGAAACGTCTAAAGGATGCAGAAGAAGAACAGTATCGAGCTGAGGAAGATGCAGCATCCCTGAGAGCAGAACTCAATATGATACAGCAACAAACAATGAGTGGCTCACTTGGTGCACTAAACTCAATTGCTAATCCACCTGATCAGATAAAAACATTAGAAATTGAGTTGGCTAACATAAAGTCTGAGTTACAGCAATTAGCAGAGGAGCAGGCTCGAGCATCCATCCTTACATCTGAGAAGCAAGAATTGGAAGAAAAACTTGCAGCTTTGTCTAGAAAGTCTTCAGGCACCATAGCATATTACAATTCTCAACATGGAGTGGCTTTTAGATATTTTGAGCAATATCCATTGCCCTGGATAAGTGTCAGAGAAAGTGGCCAGCGAGGGATTTTCATTAATAGAAAGGCTTTTGAGGAAAACTCTAATTTATCTAGTTATCATCAGGAGGCTATGAGCATAGCTTTGTACTGGGAGAATCAGGTGAAAGACTGTCTTAAGCAAAATGAAGAGCTCCGAGGAATCTTAGATAAGTTAAGAACTGACCAGGCCAAGGGGTTGCTCGACTCCCATAGCAATGGCTCTAACAAGACTGGTTTAGCTGAATATACACCTGAAGTTCTCCCTATCAAGGATAAACTTGCAAAAGAACAGGGCAAAGCAGAGGCATTATCAGCTGAGGTATTACAGCTCTCAGCAAGACTCCAACAAACCACTCAAGCATACAATGGTCTTGTACGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

42.39

Weight (kDa)

5.74

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 680
AccII CGCG 1 cut(s) 125
AciI CCGC 2 cut(s) 15, 52
AclWI GGATC 1 cut(s) 372
AcoI YGGCCR 1 cut(s) 769
AcsI RAATTY 1 cut(s) 217
AcuI CTGAAG 2 cut(s) 660, 1026
AdeI CACNNNGTG 1 cut(s) 503
AfaI GTAC 5 cut(s) 154, 261, 297, 860, 1128
AfiI CCNNNNNNNGG 2 cut(s) 943, 1021
AflII CTTAAG 1 cut(s) 887
AgsI TTSAA 2 cut(s) 236, 277
AjnI CCWGG 2 cut(s) 746, 936
AjuI GAANNNNNNNTTGG 2 cut(s) 623, 655
Alw21I GWGCWC 2 cut(s) 508, 906
Alw26I GTCTC 1 cut(s) 168
Alw44I GTGCAC 1 cut(s) 504
AlwI GGATC 1 cut(s) 372
Ama87I CYCGRG 1 cut(s) 606
AoxI GGCC 2 cut(s) 769, 939
ApaLI GTGCAC 1 cut(s) 504
ApeKI GCWGC 4 cut(s) 344, 379, 443, 656
ApoI RAATTY 1 cut(s) 217
AseI ATTAAT 1 cut(s) 789
Asp700I GAANNNNTTC 1 cut(s) 673
AspLEI GCGC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 1 cut(s) 886
AvaI CYCGRG 1 cut(s) 606
BaeGI GKGCMC 1 cut(s) 508
BalI TGGCCA 1 cut(s) 771
BanI GGYRCC 1 cut(s) 680
BanII GRGCYC 1 cut(s) 906
BbsI GAAGAC 1 cut(s) 666
Bbv12I GWGCWC 2 cut(s) 508, 906
BbvCI CCTCAGC 2 cut(s) 432, 1068
BbvI GCAGC 4 cut(s) 356, 366, 455, 668
BccI CCATC 2 cut(s) 307, 623
BciT130I CCWGG 2 cut(s) 748, 938
BclI TGATCA 1 cut(s) 532
BcnI CCSGG 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 168
BfaI CTAG 3 cut(s) 9, 666, 825
BfmI CTRYAG 1 cut(s) 263
BfrI CTTAAG 1 cut(s) 887
BisI GCNGC 5 cut(s) 15, 345, 380, 444, 657
BlsI GCNGC 5 cut(s) 16, 346, 381, 445, 658
BmcAI AGTACT 1 cut(s) 154
Bme1390I CCNGG 3 cut(s) 250, 748, 938
BmeT110I CYCGRG 1 cut(s) 606
BmiI GGNNCC 1 cut(s) 682
BmrFI CCNGG 3 cut(s) 250, 748, 938
BmrI ACTGGG 1 cut(s) 871
BmsI GCATC 5 cut(s) 331, 397, 430, 455, 620
BmuI ACTGGG 1 cut(s) 871
BpiI GAAGAC 1 cut(s) 666
BplI GAGNNNNNCTC 8 cut(s) 298, 330, 353, 385, 447, 479, 797, 829
Bpu10I CCTNAGC 2 cut(s) 432, 1068
BpuEI CTTGAG 3 cut(s) 302, 374, 1092
BpuMI CCSGG 1 cut(s) 250
BsaJI CCNNGG 3 cut(s) 746, 907, 942
Bsc4I CCNNNNNNNGG 2 cut(s) 943, 1021
Bse1I ACTGG 4 cut(s) 18, 204, 866, 988
Bse3DI GCAATG 3 cut(s) 336, 740, 973
BseBI CCWGG 2 cut(s) 748, 938
BseDI CCNNGG 3 cut(s) 746, 907, 942
BseGI GGATG 5 cut(s) 328, 412, 446, 611, 615
BseLI CCNNNNNNNGG 2 cut(s) 943, 1021
BseMI GCAATG 3 cut(s) 336, 740, 973
BseMII CTCAG 9 cut(s) 129, 179, 384, 423, 443, 567, 618, 1059, 1098
BseNI ACTGG 4 cut(s) 18, 204, 866, 988
BseRI GAGGAG 1 cut(s) 611
BseSI GKGCMC 1 cut(s) 508
BseXI GCAGC 4 cut(s) 356, 366, 455, 668
BseYI CCCAGC 1 cut(s) 375
Bsh1236I CGCG 1 cut(s) 125
BshFI GGCC 2 cut(s) 771, 941
BshNI GGYRCC 1 cut(s) 680
BsiHKAI GWGCWC 2 cut(s) 508, 906
BsiHKCI CYCGRG 1 cut(s) 606
BsiSI CCGG 1 cut(s) 249
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 2 cut(s) 943, 1021
BsmAI GTCTC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 265
BsmI GAATGC 1 cut(s) 196
BsnI GGCC 2 cut(s) 771, 941
BsoBI CYCGRG 1 cut(s) 606
Bsp1286I GDGCHC 2 cut(s) 508, 906
Bsp143I GATC 4 cut(s) 30, 280, 364, 532
BspACI CCGC 2 cut(s) 15, 52
BspANI GGCC 2 cut(s) 771, 941
BspCNI CTCAG 9 cut(s) 130, 178, 383, 424, 444, 568, 619, 1060, 1097
BspFNI CGCG 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 682
BspMAI CTGCAG 1 cut(s) 267
BspPI GGATC 1 cut(s) 372
BspQI GCTCTTC 1 cut(s) 894
BspT107I GGYRCC 1 cut(s) 680
BspTI CTTAAG 1 cut(s) 887
BsrDI GCAATG 3 cut(s) 336, 740, 973
BsrI ACTGG 4 cut(s) 18, 204, 866, 988
BssECI CCNNGG 3 cut(s) 746, 907, 942
BssMI GATC 4 cut(s) 30, 280, 364, 532
BssT1I CCWWGG 1 cut(s) 942
Bst2UI CCWGG 2 cut(s) 748, 938
Bst4CI ACNGT 4 cut(s) 259, 295, 423, 884
Bst6I CTCTTC 1 cut(s) 894
BstAFI CTTAAG 1 cut(s) 887
BstAPI GCANNNNNTGC 1 cut(s) 353
BstC8I GCNNGC 2 cut(s) 603, 773
BstF5I GGATG 5 cut(s) 328, 412, 446, 611, 615
BstFNI CGCG 1 cut(s) 125
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 4 cut(s) 33, 283, 367, 535
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 4 cut(s) 30, 280, 364, 532
BstMWI GCNNNNNNNGC 3 cut(s) 353, 385, 1064
BstNI CCWGG 2 cut(s) 748, 938
BstSCI CCNGG 3 cut(s) 248, 746, 936
BstSFI CTRYAG 1 cut(s) 263
BstSLI GKGCMC 1 cut(s) 508
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 4 cut(s) 356, 366, 455, 668
BstV2I GAAGAC 1 cut(s) 666
BstX2I RGATCY 1 cut(s) 364
BstXI CCANNNNNNTGG 2 cut(s) 747, 968
BstYI RGATCY 1 cut(s) 364
BsuRI GGCC 2 cut(s) 771, 941
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 5 cut(s) 328, 412, 446, 611, 615
Cac8I GCNNGC 2 cut(s) 603, 773
CfoI GCGC 1 cut(s) 125
Csp6I GTAC 5 cut(s) 153, 260, 296, 859, 1127
CviAII CATG 2 cut(s) 229, 707
CviQI GTAC 5 cut(s) 153, 260, 296, 859, 1127
DpnI GATC 4 cut(s) 32, 282, 366, 534
DpnII GATC 4 cut(s) 30, 280, 364, 532
DraIII CACNNNGTG 1 cut(s) 503
EaeI YGGCCR 1 cut(s) 769
Eam1104I CTCTTC 1 cut(s) 894
EarI CTCTTC 1 cut(s) 894
Ecl136II GAGCTC 1 cut(s) 904
Eco130I CCWWGG 1 cut(s) 942
Eco24I GRGCYC 1 cut(s) 906
Eco53kI GAGCTC 1 cut(s) 904
Eco57I CTGAAG 2 cut(s) 660, 1026
Eco88I CYCGRG 1 cut(s) 606
EcoICRI GAGCTC 1 cut(s) 904
EcoRII CCWGG 2 cut(s) 746, 936
EcoT14I CCWWGG 1 cut(s) 942
EcoT38I GRGCYC 1 cut(s) 906
ErhI CCWWGG 1 cut(s) 942
FaeI CATG 2 cut(s) 232, 710
FalI AAGNNNNNCTT 4 cut(s) 636, 668, 870, 902
FaqI GGGAC 1 cut(s) 265
FatI CATG 2 cut(s) 228, 706
FbaI TGATCA 1 cut(s) 532
Fnu4HI GCNGC 5 cut(s) 15, 345, 380, 444, 657
FokI GGATG 5 cut(s) 335, 419, 433, 598, 602
FriOI GRGCYC 1 cut(s) 906
Fsp4HI GCNGC 5 cut(s) 15, 345, 380, 444, 657
FspBI CTAG 3 cut(s) 9, 666, 825
GlaI GCGC 1 cut(s) 124
GluI GCNGC 5 cut(s) 15, 345, 380, 444, 657
GsaI CCCAGC 1 cut(s) 379
HaeIII GGCC 2 cut(s) 771, 941
HapII CCGG 1 cut(s) 249
HhaI GCGC 1 cut(s) 125
Hin1II CATG 2 cut(s) 232, 710
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HinfI GANTC 6 cut(s) 127, 132, 868, 912, 956, 1092
HpaII CCGG 1 cut(s) 249
HphI GGTGA 1 cut(s) 886
Hpy166II GTNNAC 1 cut(s) 506
Hpy188I TCNGA 9 cut(s) 94, 118, 139, 168, 537, 577, 628, 761, 908
Hpy188III TCNNGA 3 cut(s) 391, 666, 836
Hpy8I GTNNAC 1 cut(s) 506
HpyCH4III ACNGT 4 cut(s) 259, 295, 423, 884
HpyCH4IV ACGT 2 cut(s) 397, 1129
HpyF10VI GCNNNNNNNGC 3 cut(s) 353, 385, 1064
HpySE526I ACGT 2 cut(s) 397, 1129
Hsp92II CATG 2 cut(s) 232, 710
HspAI GCGC 1 cut(s) 123
Ksp22I TGATCA 1 cut(s) 532
Kzo9I GATC 4 cut(s) 30, 280, 364, 532
LguI GCTCTTC 1 cut(s) 894
LmnI GCTCC 2 cut(s) 598, 909
Lsp1109I GCAGC 4 cut(s) 356, 366, 455, 668
LweI GCATC 5 cut(s) 331, 397, 430, 455, 620
MaeI CTAG 3 cut(s) 9, 666, 825
MaeII ACGT 2 cut(s) 397, 1129
MaeIII GTNAC 1 cut(s) 579
MalI GATC 4 cut(s) 32, 282, 366, 534
MboI GATC 4 cut(s) 30, 280, 364, 532
MboII GAAGA 8 cut(s) 199, 215, 425, 428, 449, 656, 666, 911
MfeI CAATTG 1 cut(s) 516
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 2 cut(s) 508, 906
MlsI TGGCCA 1 cut(s) 771
MluCI AATT 8 cut(s) 58, 217, 516, 552, 587, 638, 697, 817
MluNI TGGCCA 1 cut(s) 771
MlyI GAGTC 3 cut(s) 126, 950, 1086
MmeI TCCRAC 1 cut(s) 1120
Mox20I TGGCCA 1 cut(s) 771
MroXI GAANNNNTTC 1 cut(s) 673
MscI TGGCCA 1 cut(s) 771
MseI TTAA 4 cut(s) 57, 789, 888, 926
MslI CAYNNNNRTG 1 cut(s) 966
Msp20I TGGCCA 1 cut(s) 771
MspA1I CMGCKG 2 cut(s) 379, 1067
MspCI CTTAAG 1 cut(s) 887
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 3 cut(s) 250, 748, 938
MunI CAATTG 1 cut(s) 516
Mva1269I GAATGC 1 cut(s) 196
MvaI CCWGG 2 cut(s) 748, 938
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 3 cut(s) 353, 385, 1064
NciI CCSGG 1 cut(s) 250
NdeII GATC 4 cut(s) 30, 280, 364, 532
NlaIII CATG 2 cut(s) 232, 710
NlaIV GGNNCC 1 cut(s) 682
PaeR7I CTCGAG 1 cut(s) 606
PciSI GCTCTTC 1 cut(s) 894
PcsI WCGNNNNNNNCGW 1 cut(s) 122
PctI GAATGC 1 cut(s) 196
PdmI GAANNNNTTC 1 cut(s) 673
PfeI GAWTC 3 cut(s) 127, 868, 912
PkrI GCNGC 5 cut(s) 16, 346, 381, 445, 658
PleI GAGTC 3 cut(s) 126, 950, 1086
PpsI GAGTC 3 cut(s) 126, 950, 1086
PshBI ATTAAT 1 cut(s) 789
Psp124BI GAGCTC 1 cut(s) 906
Psp6I CCWGG 2 cut(s) 746, 936
PspFI CCCAGC 1 cut(s) 375
PspGI CCWGG 2 cut(s) 746, 936
PspN4I GGNNCC 1 cut(s) 682
PspXI VCTCGAGB 1 cut(s) 606
PstI CTGCAG 1 cut(s) 267
PsuI RGATCY 1 cut(s) 364
PvuII CAGCTG 2 cut(s) 379, 1067
RsaI GTAC 5 cut(s) 154, 261, 297, 860, 1128
RsaNI GTAC 5 cut(s) 153, 260, 296, 859, 1127
RseI CAYNNNNRTG 1 cut(s) 966
SacI GAGCTC 1 cut(s) 906
SapI GCTCTTC 1 cut(s) 894
SaqAI TTAA 4 cut(s) 57, 789, 888, 926
SatI GCNGC 5 cut(s) 15, 345, 380, 444, 657
Sau3AI GATC 4 cut(s) 30, 280, 364, 532
ScaI AGTACT 1 cut(s) 154
SchI GAGTC 3 cut(s) 126, 950, 1086
ScrFI CCNGG 3 cut(s) 250, 748, 938
SduI GDGCHC 2 cut(s) 508, 906
SfaNI GCATC 5 cut(s) 331, 397, 430, 455, 620
SfcI CTRYAG 1 cut(s) 263
Sfr274I CTCGAG 1 cut(s) 606
SlaI CTCGAG 1 cut(s) 606
SmiMI CAYNNNNRTG 1 cut(s) 966
SmlI CTYRAG 5 cut(s) 317, 389, 606, 887, 1107
SmoI CTYRAG 5 cut(s) 317, 389, 606, 887, 1107
Sse9I AATT 8 cut(s) 58, 217, 516, 552, 587, 638, 697, 817
SsiI CCGC 2 cut(s) 15, 52
SspMI CTAG 3 cut(s) 9, 666, 825
SstI GAGCTC 1 cut(s) 906
StyD4I CCNGG 3 cut(s) 248, 746, 936
StyI CCWWGG 1 cut(s) 942
TaaI ACNGT 4 cut(s) 259, 295, 423, 884
TaiI ACGT 2 cut(s) 400, 1132
TaqI TCGA 5 cut(s) 29, 130, 427, 607, 954
TasI AATT 8 cut(s) 58, 217, 516, 552, 587, 638, 697, 817
TatI WGTACW 3 cut(s) 152, 259, 858
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 3 cut(s) 127, 868, 912
Tru1I TTAA 4 cut(s) 57, 789, 888, 926
Tru9I TTAA 4 cut(s) 57, 789, 888, 926
TseI GCWGC 4 cut(s) 344, 379, 443, 656
TspDTI ATGAA 3 cut(s) 17, 775, 912
Vha464I CTTAAG 1 cut(s) 887
VneI GTGCAC 1 cut(s) 504
VspI ATTAAT 1 cut(s) 789
XapI RAATTY 1 cut(s) 217
XbaI TCTAGA 1 cut(s) 665
XhoI CTCGAG 1 cut(s) 606
XmnI GAANNNNTTC 1 cut(s) 673
XspI CTAG 3 cut(s) 9, 666, 825
ZrmI AGTACT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.