Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004466

Physical Location & Seq

Genomic Coordinates Forward (+)

6830038 .. 6841616

Gene Structure 11579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1084900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGACTCCCGCCACGCAACTCTCGGCCGACGAACGCGAGCTGTAGAAAAGTTGAGCAAAACTTCGTCCGGACCCGATCTCAGCAAAGCCTCCATCCCTATCGATGATGTAGGAATGCGAAAATCGGAGAGCGCGAATTGGCTCTCTGAGAGCGACGTCAGTGTTTTGGTTGCTCAGATAAAGGACTTGGAGAAGAAGAATGCGGAATTGAAGGAGCAAAACAAAAACTTGGCTTCCATGCTTGAAACAAAGAGAAATGCAATGGAGAAAGATGCCGCAGTTGTTGCACGGGAGGATCTTTCAGCTCAGCTTCGTATGCTCAAGAAACGGTTAAAGGATGCAGAGGAAGAACAGTATCAAGCTGAGGAAGACGCAGTCGCTTTGAGAGCAGAACTGAATATGTTACAGCAACAAGCAATGAGTGGTTCACTTGGTGCAATGAACTCAATTTCTAATTCACCAGATCAGATACAAATGCTAGAAAAGGAGTTAGCTAGCTTAAAATCTGCGTTACAGCAAGAGTCACACTTGAGGCAACAAGAGCCACAACAACTAGCAGAGGAGCAAGCCGGGGCATCCATGCTTACATCTGAAAAGCAAGAACTGGAAGAAAAACTTGCAGCTATGTCTAGAAAGGCTTCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

23.86

Weight (kDa)

5.25

Isoelectric Point (pI)

56.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59210 AT5G59210
fragaria_vesca	FvH4_2g37740 FvH4_3g37100 FvH4_3g37100
malus_domestica	MD03G1084900.v1.1 MD11G1092400.v1.1
prunus_persica	Prupe.6G068200_v2.0.a1
pyrus_communis	pycom11g07770
rosa_chinensis	RchiOBHm_Chr5g0066731 RchiOBHm_Chr5g0066821
rosa_laevigata	RLG00000035876
rosa_multiflora	Rmu_sc0000605.1_g000050
rosa_roxburghii	Rroxscaffold_1G00014280 Rroxscaffold_1G00014310 Rroxscaffold_1G00014340 Rroxscaffold_1G00014360 Rroxscaffold_1G00014490 Rroxscaffold_1G00014520
rosa_rugosa	Rorug05G0379000 Rorug05G0379000
rosa_samantha	Rh5AG438200 Rh5AG438400 Rh5BG454000 Rh5BG454600 Rh5BG455400 Rh5CG476300 Rh5CG476900 Rh5CG477500 Rh5DG469100 Rh5DG470200
rosa_wichuraiana	Rw5G040960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	159
AccII	CGCG	2 cut(s)	37, 134
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	3 cut(s)	10, 203, 276
AclWI	GGATC	1 cut(s)	303
AcoI	YGGCCR	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	624
AcyI	GRCGYC	1 cut(s)	156
AdeI	CACNNNGTG	1 cut(s)	434
AgsI	TTSAA	2 cut(s)	211, 245
AluBI	AGCT	7 cut(s)	41, 305, 310, 362, 494, 498, 623
AluI	AGCT	7 cut(s)	41, 305, 310, 362, 494, 498, 623
AlwI	GGATC	1 cut(s)	303
Aor13HI	TCCGGA	1 cut(s)	68
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	620
Asp700I	GAANNNNTTC	1 cut(s)	637
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	71
AsuC2I	CCSGG	1 cut(s)	571
AsuHPI	GGTGA	1 cut(s)	450
AsuNHI	GCTAGC	1 cut(s)	494
AvaII	GGWCC	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	375
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	632
BccI	CCATC	1 cut(s)	101
BcnI	CCSGG	1 cut(s)	571
BfaI	CTAG	4 cut(s)	479, 495, 554, 630
BfmI	CTRYAG	1 cut(s)	42
BisI	GCNGC	2 cut(s)	276, 621
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	2 cut(s)	277, 622
Bme1390I	CCNGG	1 cut(s)	571
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	571
BmsI	GCATC	3 cut(s)	262, 328, 584
BmtI	GCTAGC	1 cut(s)	498
BpiI	GAAGAC	1 cut(s)	375
Bpu10I	CCTNAGC	1 cut(s)	363
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	2 cut(s)	305, 550
BpuMI	CCSGG	1 cut(s)	571
Bsa29I	ATCGAT	1 cut(s)	102
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	570
BsaWI	WCCGGW	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	609
Bse3DI	GCAATG	3 cut(s)	267, 423, 444
BseAI	TCCGGA	1 cut(s)	68
BseCI	ATCGAT	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	570
BseGI	GGATG	3 cut(s)	93, 343, 575
BseMI	GCAATG	3 cut(s)	267, 423, 444
BseMII	CTCAG	5 cut(s)	94, 138, 188, 320, 354
BseNI	ACTGG	1 cut(s)	609
BseRI	GAGGAG	1 cut(s)	575
BseX3I	CGGCCG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	632
Bsh1236I	CGCG	2 cut(s)	37, 134
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	27
BshVI	ATCGAT	1 cut(s)	102
BsiEI	CGRYCG	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	69, 570
BsmI	GAATGC	2 cut(s)	120, 205
BsnI	GGCC	1 cut(s)	27
Bsp13I	TCCGGA	1 cut(s)	68
Bsp143I	GATC	3 cut(s)	76, 295, 463
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	3 cut(s)	10, 203, 276
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	5 cut(s)	93, 139, 187, 319, 355
BspDI	ATCGAT	1 cut(s)	102
BspEI	TCCGGA	1 cut(s)	68
BspFNI	CGCG	2 cut(s)	37, 134
BspLI	GGNNCC	1 cut(s)	73
BspOI	GCTAGC	1 cut(s)	498
BspPI	GGATC	1 cut(s)	303
BsrDI	GCAATG	3 cut(s)	267, 423, 444
BsrI	ACTGG	1 cut(s)	609
BssECI	CCNNGG	1 cut(s)	570
BssMI	GATC	3 cut(s)	76, 295, 463
BssNI	GRCGYC	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	330, 354
BstACI	GRCGYC	1 cut(s)	156
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	3 cut(s)	39, 496, 567
BstDEI	CTNAG	5 cut(s)	80, 147, 174, 306, 363
BstF5I	GGATG	3 cut(s)	93, 343, 575
BstFNI	CGCG	2 cut(s)	37, 134
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	3 cut(s)	79, 298, 466
BstMBI	GATC	3 cut(s)	76, 295, 463
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	4 cut(s)	284, 316, 386, 541
BstSCI	CCNGG	1 cut(s)	569
BstSFI	CTRYAG	1 cut(s)	42
BstUI	CGCG	2 cut(s)	37, 134
BstV1I	GCAGC	1 cut(s)	632
BstV2I	GAAGAC	1 cut(s)	375
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BstZI	CGGCCG	1 cut(s)	25
Bsu15I	ATCGAT	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	27
BsuTUI	ATCGAT	1 cut(s)	102
BtsCI	GGATG	3 cut(s)	93, 343, 575
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	3 cut(s)	39, 496, 567
CfoI	GCGC	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	71
ClaI	ATCGAT	1 cut(s)	102
CseI	GACGC	1 cut(s)	380
CviAII	CATG	2 cut(s)	238, 580
DdeI	CTNAG	5 cut(s)	80, 147, 174, 306, 363
DpnI	GATC	3 cut(s)	78, 297, 465
DpnII	GATC	3 cut(s)	76, 295, 463
DraIII	CACNNNGTG	1 cut(s)	434
EaeI	YGGCCR	1 cut(s)	25
EagI	CGGCCG	1 cut(s)	25
EclXI	CGGCCG	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	71
Eco52I	CGGCCG	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	624
FaeI	CATG	2 cut(s)	241, 583
FaiI	YATR	5 cut(s)	239, 317, 401, 581, 626
FalI	AAGNNNNNCTT	2 cut(s)	600, 632
FatI	CATG	2 cut(s)	237, 579
FauI	CCCGC	1 cut(s)	17
Fnu4HI	GCNGC	2 cut(s)	276, 621
FokI	GGATG	3 cut(s)	80, 350, 562
Fsp4HI	GCNGC	2 cut(s)	276, 621
FspBI	CTAG	4 cut(s)	479, 495, 554, 630
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	2 cut(s)	276, 621
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	2 cut(s)	69, 570
HgaI	GACGC	1 cut(s)	380
HhaI	GCGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	241, 583
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HinfI	GANTC	2 cut(s)	5, 521
HpaII	CCGG	2 cut(s)	69, 570
HphI	GGTGA	1 cut(s)	450
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	6 cut(s)	127, 148, 177, 468, 592, 643
Hpy188III	TCNNGA	3 cut(s)	69, 322, 630
Hpy8I	GTNNAC	1 cut(s)	428
Hpy99I	CGWCG	2 cut(s)	33, 158
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	2 cut(s)	330, 354
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	5 cut(s)	260, 287, 341, 437, 620
HpyF10VI	GCNNNNNNNGC	4 cut(s)	284, 316, 386, 541
HpyF3I	CTNAG	5 cut(s)	80, 147, 174, 306, 363
HpySE526I	ACGT	1 cut(s)	156
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	241, 583
HspAI	GCGC	1 cut(s)	132
Kpn2I	TCCGGA	1 cut(s)	68
Kzo9I	GATC	3 cut(s)	76, 295, 463
LmnI	GCTCC	2 cut(s)	214, 562
LpnPI	CCDG	4 cut(s)	82, 474, 583, 590
Lsp1109I	GCAGC	1 cut(s)	632
LweI	GCATC	3 cut(s)	262, 328, 584
MaeI	CTAG	4 cut(s)	479, 495, 554, 630
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	3 cut(s)	402, 510, 522
MalI	GATC	3 cut(s)	78, 297, 465
MboI	GATC	3 cut(s)	76, 295, 463
MboII	GAAGA	5 cut(s)	205, 208, 359, 380, 620
MflI	RGATCY	1 cut(s)	295
MluCI	AATT	4 cut(s)	136, 206, 447, 454
MlyI	GAGTC	1 cut(s)	530
MnlI	CCTC	6 cut(s)	100, 286, 337, 358, 525, 553
MroI	TCCGGA	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	637
MseI	TTAA	2 cut(s)	332, 500
MspI	CCGG	2 cut(s)	69, 570
MspR9I	CCNGG	1 cut(s)	571
Mva1269I	GAATGC	2 cut(s)	120, 205
MvnI	CGCG	2 cut(s)	37, 134
MwoI	GCNNNNNNNGC	4 cut(s)	284, 316, 386, 541
NciI	CCSGG	1 cut(s)	571
NdeII	GATC	3 cut(s)	76, 295, 463
NheI	GCTAGC	1 cut(s)	494
NlaIII	CATG	2 cut(s)	241, 583
NlaIV	GGNNCC	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	522
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PctI	GAATGC	2 cut(s)	120, 205
PdmI	GAANNNNTTC	1 cut(s)	637
PflFI	GACNNNGTC	1 cut(s)	374
PkrI	GCNGC	2 cut(s)	277, 622
PleI	GAGTC	1 cut(s)	529
PpsI	GAGTC	1 cut(s)	529
PspN4I	GGNNCC	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	295
PsyI	GACNNNGTC	1 cut(s)	374
SaqAI	TTAA	2 cut(s)	332, 500
SatI	GCNGC	2 cut(s)	276, 621
Sau3AI	GATC	3 cut(s)	76, 295, 463
Sau96I	GGNCC	1 cut(s)	71
SchI	GAGTC	1 cut(s)	530
ScrFI	CCNGG	1 cut(s)	571
SetI	ASST	8 cut(s)	43, 159, 307, 312, 364, 496, 500, 625
SfaNI	GCATC	3 cut(s)	262, 328, 584
SfcI	CTRYAG	1 cut(s)	42
SinI	GGWCC	1 cut(s)	71
SmlI	CTYRAG	2 cut(s)	320, 529
SmoI	CTYRAG	2 cut(s)	320, 529
Sse9I	AATT	4 cut(s)	136, 206, 447, 454
SsiI	CCGC	3 cut(s)	10, 203, 276
SspMI	CTAG	4 cut(s)	479, 495, 554, 630
StyD4I	CCNGG	1 cut(s)	569
TaaI	ACNGT	2 cut(s)	330, 354
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	102
TasI	AATT	4 cut(s)	136, 206, 447, 454
TauI	GCSGC	1 cut(s)	278
Tru1I	TTAA	2 cut(s)	332, 500
Tru9I	TTAA	2 cut(s)	332, 500
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	522
TseI	GCWGC	1 cut(s)	620
Tsp45I	GTSAC	1 cut(s)	522
TspDTI	ATGAA	1 cut(s)	455
TspRI	CASTG	1 cut(s)	166
Tth111I	GACNNNGTC	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	71
XbaI	TCTAGA	1 cut(s)	629
XmnI	GAANNNNTTC	1 cut(s)	637
XspI	CTAG	4 cut(s)	479, 495, 554, 630
ZraI	GACGTC	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.