Rh5BG454600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0004466
Physical Location & Seq
Reverse (-)
72880329 .. 72894029
13701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG454600.1

Sequence Viewer

Length: 1041 bp
ATGCCTCATCCTTCCATTATTCTGGAATCGAAACAAACCAAAACAGAGAGCCAGAAACGCCGTGCAGTGGCTGAAGAGGGAATGATAAGAGACTTGGATAGGAAGAATGCAGAACTGGAAGAACAAAACAAAAATTTGGCTTCCATGCTTGAAACAAAGGAAGCCGGGAGTAATGTGCTGCAGAAACGTTTGAATGATCTGGAGCAAAATACTGTACCGTCTTTGAGGAAAGCTCTCAAGGATGTCGCAATGGAGAAAGATGCAGCAGTTGTTGCACGGGAGGATCTCTCTGGCCAGCTGCGTATGCTCAAGAAACGTCTAAAGGATGCAGAAGAAGAACAATATCGAGCTGAGGAAGATGCAGCATCCCTGAGAGCAGAACTCAATATGATACAGCAACAAACAATGAATGGCTCACTTGGTGCACTAAACTCAATTGCTAATCCACCTGATCAGATAAAAACATTAGAAATTGAGTTAGCTAACATAAAGTCCGAGTTACAGCGCGAGTCAATGTTTAGACAGCAAGAACGACAACAATTAGGAGAGGAGCAGGCTCGAGCATCCATCCTTACATCTGAGAAGCAAGAATTGGAAGAAAAACTTGCAGCTTTGTCTAGAAAGTCCTCAGAAGTGTCAGACAAAGTGGCCAGCATGGGATTTTCATTAGAGGCTATGAGCATGGCTTTGCACTGGGAGAATCAGGTGAAAGACTGTCTTAGGCAAAATGAAGAGCTCCGAGGAATCTTAGATAAGTTAAGAACTGACCAGGCCAAGGGGTTGCTCGACTCCCATAGCAATGGTTCTAACAAGACTGGTTTAGCTGAATACACACCTGAAGTTCTCTCTATTAAGGATCAACTTGCAAAAGAACAGAGCAAAGCAGAGGCATTATCAGCTGAGGTATTACAGCTCTCAGCAAGACTCCAACAAACCACTCAAGCATACAATGGTCTTGCACGCCTCTATAAACCGGTGTTGCGAAACATAGAAAGCAGTCTCATTAAGATGAAACAAGATGGCCCTGTGACAGTGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

346

Amino Acids

38.9

Weight (kDa)

5.76

Isoelectric Point (pI)

58.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 507
AciI CCGC 1 cut(s) 1036
AclI AACGTT 1 cut(s) 187
AclWI GGATC 2 cut(s) 291, 864
AcoI YGGCCR 2 cut(s) 292, 648
AcsI RAATTY 1 cut(s) 133
AcuI CTGAAG 2 cut(s) 93, 858
AdeI CACNNNGTG 1 cut(s) 422
AfaI GTAC 1 cut(s) 216
AfiI CCNNNNNNNGG 2 cut(s) 67, 775
AgeI ACCGGT 1 cut(s) 973
AgsI TTSAA 2 cut(s) 152, 193
AjnI CCWGG 1 cut(s) 768
AjuI GAANNNNNNNTTGG 2 cut(s) 575, 607
AluBI AGCT 9 cut(s) 233, 298, 350, 482, 611, 736, 824, 899, 913
AluI AGCT 9 cut(s) 233, 298, 350, 482, 611, 736, 824, 899, 913
Alw21I GWGCWC 2 cut(s) 427, 738
Alw26I GTCTC 2 cut(s) 84, 1004
Alw44I GTGCAC 1 cut(s) 423
AlwI GGATC 2 cut(s) 291, 864
AlwNI CAGNNNCTG 1 cut(s) 71
Ama87I CYCGRG 1 cut(s) 558
AoxI GGCC 4 cut(s) 292, 648, 771, 1021
ApaLI GTGCAC 1 cut(s) 423
ApeKI GCWGC 5 cut(s) 178, 263, 298, 362, 608
ApoI RAATTY 1 cut(s) 133
AsiGI ACCGGT 1 cut(s) 973
AspLEI GCGC 1 cut(s) 507
AspS9I GGNCC 1 cut(s) 1022
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 718
AvaI CYCGRG 1 cut(s) 558
BaeGI GKGCMC 1 cut(s) 427
BalI TGGCCA 2 cut(s) 294, 650
BanII GRGCYC 1 cut(s) 738
Bbv12I GWGCWC 2 cut(s) 427, 738
BbvCI CCTCAGC 2 cut(s) 351, 900
BbvI GCAGC 5 cut(s) 165, 275, 285, 374, 620
BccI CCATC 2 cut(s) 575, 1013
BceAI ACGGC 1 cut(s) 45
BciT130I CCWGG 1 cut(s) 770
BclI TGATCA 1 cut(s) 451
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 2 cut(s) 84, 1004
BfaI CTAG 1 cut(s) 618
BfmI CTRYAG 1 cut(s) 179
BisI GCNGC 5 cut(s) 179, 264, 299, 363, 609
BlsI GCNGC 5 cut(s) 180, 265, 300, 364, 610
Bme1390I CCNGG 2 cut(s) 166, 770
BmeT110I CYCGRG 1 cut(s) 558
BmgT120I GGNCC 1 cut(s) 1022
BmrFI CCNGG 2 cut(s) 166, 770
BmrI ACTGGG 1 cut(s) 703
BmsI GCATC 5 cut(s) 250, 316, 349, 374, 572
BmuI ACTGGG 1 cut(s) 703
BplI GAGNNNNNCTC 6 cut(s) 217, 249, 272, 304, 366, 398
BpmI CTGGAG 1 cut(s) 221
Bpu10I CCTNAGC 2 cut(s) 351, 900
BpuEI CTTGAG 3 cut(s) 221, 293, 924
BpuMI CCSGG 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 739, 774
BsaWI WCCGGW 1 cut(s) 973
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 775
Bse118I RCCGGY 1 cut(s) 973
Bse1I ACTGG 3 cut(s) 120, 698, 820
Bse3DI GCAATG 2 cut(s) 255, 805
BseBI CCWGG 1 cut(s) 770
BseDI CCNNGG 2 cut(s) 739, 774
BseGI GGATG 6 cut(s) 7, 247, 331, 365, 563, 567
BseLI CCNNNNNNNGG 2 cut(s) 67, 775
BseMI GCAATG 2 cut(s) 255, 805
BseMII CTCAG 6 cut(s) 342, 362, 570, 642, 891, 930
BseNI ACTGG 3 cut(s) 120, 698, 820
BseRI GAGGAG 1 cut(s) 563
BseSI GKGCMC 1 cut(s) 427
BseXI GCAGC 5 cut(s) 165, 275, 285, 374, 620
BsgI GTGCAG 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 507
BshFI GGCC 4 cut(s) 294, 650, 773, 1023
BshTI ACCGGT 1 cut(s) 973
BsiHKAI GWGCWC 2 cut(s) 427, 738
BsiHKCI CYCGRG 1 cut(s) 558
BsiSI CCGG 2 cut(s) 165, 974
BslI CCNNNNNNNGG 2 cut(s) 67, 775
BsmAI GTCTC 2 cut(s) 84, 1004
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 4 cut(s) 294, 650, 773, 1023
BsoBI CYCGRG 1 cut(s) 558
Bsp1286I GDGCHC 2 cut(s) 427, 738
Bsp143I GATC 4 cut(s) 196, 283, 451, 856
BspACI CCGC 1 cut(s) 1036
BspANI GGCC 4 cut(s) 294, 650, 773, 1023
BspCNI CTCAG 6 cut(s) 343, 363, 571, 641, 892, 929
BspFNI CGCG 1 cut(s) 507
BspMAI CTGCAG 1 cut(s) 183
BspPI GGATC 2 cut(s) 291, 864
BspQI GCTCTTC 1 cut(s) 726
BsrDI GCAATG 2 cut(s) 255, 805
BsrFI RCCGGY 1 cut(s) 973
BsrI ACTGG 3 cut(s) 120, 698, 820
BssAI RCCGGY 1 cut(s) 973
BssECI CCNNGG 2 cut(s) 739, 774
BssMI GATC 4 cut(s) 196, 283, 451, 856
BssT1I CCWWGG 1 cut(s) 774
Bst2UI CCWGG 1 cut(s) 770
Bst4CI ACNGT 4 cut(s) 214, 219, 716, 1033
Bst6I CTCTTC 2 cut(s) 69, 726
BstAPI GCANNNNNTGC 1 cut(s) 272
BstC8I GCNNGC 4 cut(s) 296, 555, 652, 961
BstDEI CTNAG 8 cut(s) 351, 371, 579, 628, 719, 748, 900, 916
BstF5I GGATG 6 cut(s) 7, 247, 331, 365, 563, 567
BstFNI CGCG 1 cut(s) 507
BstHHI GCGC 1 cut(s) 507
BstKTI GATC 4 cut(s) 199, 286, 454, 859
BstMAI GTCTC 2 cut(s) 84, 1004
BstMBI GATC 4 cut(s) 196, 283, 451, 856
BstMWI GCNNNNNNNGC 4 cut(s) 57, 272, 304, 896
BstNI CCWGG 1 cut(s) 770
BstSCI CCNGG 2 cut(s) 164, 768
BstSFI CTRYAG 1 cut(s) 179
BstSLI GKGCMC 1 cut(s) 427
BstUI CGCG 1 cut(s) 507
BstV1I GCAGC 5 cut(s) 165, 275, 285, 374, 620
BstX2I RGATCY 1 cut(s) 283
BstXI CCANNNNNNTGG 2 cut(s) 22, 800
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 4 cut(s) 294, 650, 773, 1023
BtsCI GGATG 6 cut(s) 7, 247, 331, 365, 563, 567
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 3 cut(s) 72, 691, 1038
Cac8I GCNNGC 4 cut(s) 296, 555, 652, 961
CaiI CAGNNNCTG 1 cut(s) 71
CfoI GCGC 1 cut(s) 507
Cfr10I RCCGGY 1 cut(s) 973
Cfr13I GGNCC 1 cut(s) 1022
Csp6I GTAC 1 cut(s) 215
CspAI ACCGGT 1 cut(s) 973
CviAII CATG 3 cut(s) 145, 655, 682
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 8 cut(s) 351, 371, 579, 628, 719, 748, 900, 916
DpnI GATC 4 cut(s) 198, 285, 453, 858
DpnII GATC 4 cut(s) 196, 283, 451, 856
DraIII CACNNNGTG 1 cut(s) 422
EaeI YGGCCR 2 cut(s) 292, 648
Eam1104I CTCTTC 2 cut(s) 69, 726
EarI CTCTTC 2 cut(s) 69, 726
Ecl136II GAGCTC 1 cut(s) 736
Eco130I CCWWGG 1 cut(s) 774
Eco24I GRGCYC 1 cut(s) 738
Eco53kI GAGCTC 1 cut(s) 736
Eco57I CTGAAG 2 cut(s) 93, 858
Eco88I CYCGRG 1 cut(s) 558
EcoICRI GAGCTC 1 cut(s) 736
EcoRII CCWGG 1 cut(s) 768
EcoT14I CCWWGG 1 cut(s) 774
EcoT38I GRGCYC 1 cut(s) 738
ErhI CCWWGG 1 cut(s) 774
FaeI CATG 3 cut(s) 148, 658, 685
FalI AAGNNNNNCTT 4 cut(s) 588, 620, 702, 734
FatI CATG 3 cut(s) 144, 654, 681
FbaI TGATCA 1 cut(s) 451
Fnu4HI GCNGC 5 cut(s) 179, 264, 299, 363, 609
FokI GGATG 5 cut(s) 254, 338, 352, 550, 554
FriOI GRGCYC 1 cut(s) 738
Fsp4HI GCNGC 5 cut(s) 179, 264, 299, 363, 609
FspBI CTAG 1 cut(s) 618
GlaI GCGC 1 cut(s) 506
GluI GCNGC 5 cut(s) 179, 264, 299, 363, 609
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 4 cut(s) 294, 650, 773, 1023
HapII CCGG 2 cut(s) 165, 974
HhaI GCGC 1 cut(s) 507
Hin1II CATG 3 cut(s) 148, 658, 685
Hin6I GCGC 1 cut(s) 505
HinP1I GCGC 1 cut(s) 505
HinfI GANTC 6 cut(s) 26, 509, 700, 744, 788, 924
HpaII CCGG 2 cut(s) 165, 974
HphI GGTGA 1 cut(s) 718
Hpy166II GTNNAC 1 cut(s) 425
Hpy188I TCNGA 6 cut(s) 456, 496, 580, 631, 640, 740
Hpy188III TCNNGA 4 cut(s) 23, 200, 310, 618
Hpy8I GTNNAC 1 cut(s) 425
HpyAV CCTTC 1 cut(s) 21
HpyCH4III ACNGT 4 cut(s) 214, 219, 716, 1033
HpyCH4IV ACGT 2 cut(s) 187, 316
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 272, 304, 896
HpyF3I CTNAG 8 cut(s) 351, 371, 579, 628, 719, 748, 900, 916
HpySE526I ACGT 2 cut(s) 187, 316
Hsp92II CATG 3 cut(s) 148, 658, 685
HspAI GCGC 1 cut(s) 505
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 4 cut(s) 196, 283, 451, 856
LguI GCTCTTC 1 cut(s) 726
LmnI GCTCC 3 cut(s) 202, 550, 741
Lsp1109I GCAGC 5 cut(s) 165, 275, 285, 374, 620
LweI GCATC 5 cut(s) 250, 316, 349, 374, 572
MaeI CTAG 1 cut(s) 618
MaeII ACGT 2 cut(s) 187, 316
MaeIII GTNAC 2 cut(s) 498, 1027
MalI GATC 4 cut(s) 198, 285, 453, 858
MboI GATC 4 cut(s) 196, 283, 451, 856
MboII GAAGA 8 cut(s) 86, 115, 131, 344, 347, 368, 608, 743
MfeI CAATTG 1 cut(s) 435
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 2 cut(s) 427, 738
MlsI TGGCCA 2 cut(s) 294, 650
MluCI AATT 5 cut(s) 133, 435, 471, 539, 590
MluNI TGGCCA 2 cut(s) 294, 650
MlyI GAGTC 3 cut(s) 518, 782, 918
MmeI TCCRAC 1 cut(s) 952
Mox20I TGGCCA 2 cut(s) 294, 650
MscI TGGCCA 2 cut(s) 294, 650
MseI TTAA 3 cut(s) 758, 852, 1005
MslI CAYNNNNRTG 2 cut(s) 798, 1007
Msp20I TGGCCA 2 cut(s) 294, 650
MspA1I CMGCKG 2 cut(s) 298, 899
MspI CCGG 2 cut(s) 165, 974
MspR9I CCNGG 2 cut(s) 166, 770
MunI CAATTG 1 cut(s) 435
Mva1269I GAATGC 1 cut(s) 112
MvaI CCWGG 1 cut(s) 770
MvnI CGCG 1 cut(s) 507
MwoI GCNNNNNNNGC 4 cut(s) 57, 272, 304, 896
NciI CCSGG 1 cut(s) 166
NdeII GATC 4 cut(s) 196, 283, 451, 856
NlaIII CATG 3 cut(s) 148, 658, 685
NmuCI GTSAC 1 cut(s) 1027
PaeR7I CTCGAG 1 cut(s) 558
PciSI GCTCTTC 1 cut(s) 726
PctI GAATGC 1 cut(s) 112
PfeI GAWTC 3 cut(s) 26, 700, 744
PinAI ACCGGT 1 cut(s) 973
PkrI GCNGC 5 cut(s) 180, 265, 300, 364, 610
PleI GAGTC 3 cut(s) 517, 782, 918
PpsI GAGTC 3 cut(s) 517, 782, 918
Psp124BI GAGCTC 1 cut(s) 738
Psp1406I AACGTT 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 768
PspGI CCWGG 1 cut(s) 768
PspPI GGNCC 1 cut(s) 1022
PspXI VCTCGAGB 1 cut(s) 558
PstI CTGCAG 1 cut(s) 183
PstNI CAGNNNCTG 1 cut(s) 71
PsuI RGATCY 1 cut(s) 283
PvuII CAGCTG 2 cut(s) 298, 899
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
RseI CAYNNNNRTG 2 cut(s) 798, 1007
SacI GAGCTC 1 cut(s) 738
SapI GCTCTTC 1 cut(s) 726
SaqAI TTAA 3 cut(s) 758, 852, 1005
SatI GCNGC 5 cut(s) 179, 264, 299, 363, 609
Sau3AI GATC 4 cut(s) 196, 283, 451, 856
Sau96I GGNCC 1 cut(s) 1022
SchI GAGTC 3 cut(s) 518, 782, 918
ScrFI CCNGG 2 cut(s) 166, 770
SduI GDGCHC 2 cut(s) 427, 738
SfaNI GCATC 5 cut(s) 250, 316, 349, 374, 572
SfcI CTRYAG 1 cut(s) 179
Sfr274I CTCGAG 1 cut(s) 558
SlaI CTCGAG 1 cut(s) 558
SmiMI CAYNNNNRTG 2 cut(s) 798, 1007
SmlI CTYRAG 4 cut(s) 236, 308, 558, 939
SmoI CTYRAG 4 cut(s) 236, 308, 558, 939
Sse9I AATT 5 cut(s) 133, 435, 471, 539, 590
SsiI CCGC 1 cut(s) 1036
SspMI CTAG 1 cut(s) 618
SstI GAGCTC 1 cut(s) 738
StyD4I CCNGG 2 cut(s) 164, 768
StyI CCWWGG 1 cut(s) 774
TaaI ACNGT 4 cut(s) 214, 219, 716, 1033
TaiI ACGT 2 cut(s) 190, 319
TaqI TCGA 4 cut(s) 29, 346, 559, 786
TasI AATT 5 cut(s) 133, 435, 471, 539, 590
TfiI GAWTC 3 cut(s) 26, 700, 744
Tru1I TTAA 3 cut(s) 758, 852, 1005
Tru9I TTAA 3 cut(s) 758, 852, 1005
TscAI CASTG 3 cut(s) 72, 698, 1038
TseFI GTSAC 1 cut(s) 1027
TseI GCWGC 5 cut(s) 178, 263, 298, 362, 608
Tsp45I GTSAC 1 cut(s) 1027
TspDTI ATGAA 4 cut(s) 422, 654, 744, 1025
TspRI CASTG 3 cut(s) 72, 698, 1038
VneI GTGCAC 1 cut(s) 423
XapI RAATTY 1 cut(s) 133
XbaI TCTAGA 1 cut(s) 617
XhoI CTCGAG 1 cut(s) 558
XspI CTAG 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.