Prupe.6G068200_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
4691512 .. 4696594
5083 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G068200.1

Sequence Viewer

Length: 1314 bp
ATGGATTCACGCCACGCATCTCTAGGCCGACGAACGTTGGAAGATATTCGCCAAAAGAGAGCTGCAGAAAAATTGAGCAAAACTTCTTCGGGACCCGATCTCAGCAAAGCCTCAATCCCTATCGACCATGTAGGAATGAGAAAATCGGAGAGTGCAAGTCGGCTATCTGAGAGCGACGTTGGGGTTTTGGTTGCTCAGATACAAGACTTGGAGAGGAAGAATGCAGAACTGGAAGAACAAAACAAAAACTTGGCTTCCATGCTTGAAACAAAGGAAGCTGGGGGTGACGTGCTGCAGAAACGTTTGAATGATCTGGAGAAAAACACTGTACCGTCTCTCAGAAAAGCTCTCAAGGACGTTGCAATGGAGAAAGATGCGGCAGTTGTTGCACGGGAGGATCTTTCAGCTCAGCTTCGTACGCTCAAGAAACGTCTGAAAGATGCAGAAGAAGAACAGTATCGTGCTGAGGAAGATGCAGCATCCTTGAGAGCCGAACTGAATATGATACAACAACAAGCAATGAGTGGTACACTTAGTGCAGTAACCTCAATTGCTAATTCACCAGATCAGATACAAACCTTAGAAAAGGAGTTAGCTAGCTTAAAATTTGAGTTACAGCGAGAGTCGCAATTGAGGCAGCAAGAGCGACAACAATTAGCAGAGGAGCAAGCCCGGGCATCCACCCTTACATCTGAAAAGCAGGAATTGGAAGAAAAGCTTGCAGCTATTTCTAGAAAGGCTTCAGAAGTCTCAGAGAAAGTGGCTGGCAAGGAATTTTCATTAGAGGACAAGGAGAAACTTGAGAAGCAGTTGCATGACATGGCTGTAGTGATTGAGAAATTGGAAAGCAGTAGACAAAAGCTTTTGATAGAGATTGATTCCCAATCTTCAGAGATAGAAAGGCTTTTTGAGGAAAATTCTAATCTCTCGAGTTCCTATCAGGAGTCGATGAACATATCAGTGCACTGGGAGAATCAGGTGAAAGACTGTCTTAAGCAAAATGAAGAGCTCCGTGGAACTTTAGATAAGCTGAGAACAGACCAGGCCAAGGGGACGCCAGAATCCCACGAAGGCAGGGATAATGAGACTGGTTCAGCTGCATATACAACTGAAGTTCTCTCCATCAAGGATCAAATTGCAAAAGAACAAAGCAGAGCAGAGGCATTATCAGCCGAGGTATTGCAGCTGTCCGCACGACTCCAACAATCCACCCAAGCATACAATGGGCTTGCACGCCTCTATAAACCAGTGTTACGAAACATAGAAAGCAGTCTCATCAAGTTGAAACAAGATGGCCCAGTGACTGTGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

438

Amino Acids

49.01

Weight (kDa)

5.37

Isoelectric Point (pI)

58.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 853
AciI CCGC 3 cut(s) 377, 1191, 1309
AclI AACGTT 2 cut(s) 35, 301
AclWI GGATC 2 cut(s) 405, 1137
AcsI RAATTY 3 cut(s) 605, 773, 916
AcuI CTGAAG 3 cut(s) 726, 873, 1131
AcyI GRCGYC 1 cut(s) 1055
AdeI CACNNNGTG 1 cut(s) 536
AfaI GTAC 3 cut(s) 330, 418, 529
AfiI CCNNNNNNNGG 1 cut(s) 1048
AflII CTTAAG 1 cut(s) 992
AgsI TTSAA 3 cut(s) 266, 307, 1285
AjiI CACGTC 1 cut(s) 289
AjnI CCWGG 1 cut(s) 1041
Alw21I GWGCWC 2 cut(s) 966, 1011
Alw26I GTCTC 4 cut(s) 339, 754, 1079, 1277
Alw44I GTGCAC 1 cut(s) 962
AlwI GGATC 2 cut(s) 405, 1137
AlwNI CAGNNNCTG 1 cut(s) 1304
Ama87I CYCGRG 2 cut(s) 672, 928
AoxI GGCC 3 cut(s) 25, 1044, 1294
ApaLI GTGCAC 1 cut(s) 962
ApeKI GCWGC 7 cut(s) 62, 292, 476, 637, 722, 1097, 1183
ApoI RAATTY 3 cut(s) 605, 773, 916
Asp700I GAANNNNTTC 2 cut(s) 45, 739
AspS9I GGNCC 2 cut(s) 92, 1295
AsuC2I CCSGG 2 cut(s) 673, 674
AsuHPI GGTGA 3 cut(s) 296, 552, 991
AsuNHI GCTAGC 1 cut(s) 596
AvaI CYCGRG 2 cut(s) 672, 928
AvaII GGWCC 1 cut(s) 92
BaeGI GKGCMC 1 cut(s) 966
BanII GRGCYC 1 cut(s) 1011
Bbv12I GWGCWC 2 cut(s) 966, 1011
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 7 cut(s) 49, 279, 488, 649, 734, 1084, 1195
BccI CCATC 2 cut(s) 1130, 1286
BciT130I CCWGG 1 cut(s) 1043
BcnI CCSGG 2 cut(s) 673, 674
BcoDI GTCTC 4 cut(s) 339, 754, 1079, 1277
BfaI CTAG 3 cut(s) 23, 597, 732
BfmI CTRYAG 3 cut(s) 63, 293, 825
BfrI CTTAAG 1 cut(s) 992
BisI GCNGC 8 cut(s) 63, 293, 378, 477, 638, 723, 1098, 1184
BlpI GCTNAGC 1 cut(s) 408
BlsI GCNGC 8 cut(s) 64, 294, 379, 478, 639, 724, 1099, 1185
Bme1390I CCNGG 3 cut(s) 673, 674, 1043
Bme18I GGWCC 1 cut(s) 92
BmeT110I CYCGRG 2 cut(s) 672, 928
BmgBI CACGTC 1 cut(s) 289
BmgT120I GGNCC 2 cut(s) 92, 1295
BmiI GGNNCC 2 cut(s) 93, 94
BmrFI CCNGG 3 cut(s) 673, 674, 1043
BmrI ACTGGG 2 cut(s) 976, 1292
BmsI GCATC 6 cut(s) 26, 364, 430, 463, 488, 686
BmtI GCTAGC 1 cut(s) 600
BmuI ACTGGG 2 cut(s) 976, 1292
BpmI CTGGAG 1 cut(s) 335
Bpu10I CCTNAGC 1 cut(s) 465
Bpu1102I GCTNAGC 1 cut(s) 408
BpuEI CTTGAG 4 cut(s) 335, 407, 505, 821
BpuMI CCSGG 2 cut(s) 673, 674
BsaHI GRCGYC 1 cut(s) 1055
BsaJI CCNNGG 4 cut(s) 672, 1012, 1047, 1173
Bsc4I CCNNNNNNNGG 1 cut(s) 1048
Bse1I ACTGG 5 cut(s) 234, 971, 1093, 1247, 1298
Bse3DI GCAATG 2 cut(s) 369, 525
BseBI CCWGG 1 cut(s) 1043
BseDI CCNNGG 4 cut(s) 672, 1012, 1047, 1173
BseGI GGATG 2 cut(s) 479, 677
BseLI CCNNNNNNNGG 1 cut(s) 1048
BseMI GCAATG 2 cut(s) 369, 525
BseMII CTCAG 8 cut(s) 115, 159, 209, 352, 422, 456, 765, 1022
BseNI ACTGG 5 cut(s) 234, 971, 1093, 1247, 1298
BseRI GAGGAG 1 cut(s) 677
BseSI GKGCMC 1 cut(s) 966
BseXI GCAGC 7 cut(s) 49, 279, 488, 649, 734, 1084, 1195
BseYI CCCAGC 1 cut(s) 278
BsgI GTGCAG 1 cut(s) 558
BshFI GGCC 3 cut(s) 27, 1046, 1296
BsiHKAI GWGCWC 2 cut(s) 966, 1011
BsiHKCI CYCGRG 2 cut(s) 672, 928
BsiSI CCGG 1 cut(s) 673
BsiWI CGTACG 1 cut(s) 416
BslFI GGGAC 2 cut(s) 105, 1066
BslI CCNNNNNNNGG 1 cut(s) 1048
BsmAI GTCTC 4 cut(s) 339, 754, 1079, 1277
BsmBI CGTCTC 1 cut(s) 339
BsmFI GGGAC 2 cut(s) 105, 1066
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 3 cut(s) 27, 1046, 1296
BsoBI CYCGRG 2 cut(s) 672, 928
Bsp1286I GDGCHC 2 cut(s) 966, 1011
Bsp143I GATC 5 cut(s) 97, 310, 397, 565, 1129
Bsp1720I GCTNAGC 1 cut(s) 408
BspACI CCGC 3 cut(s) 377, 1191, 1309
BspANI GGCC 3 cut(s) 27, 1046, 1296
BspCNI CTCAG 8 cut(s) 114, 160, 208, 351, 421, 457, 764, 1023
BspLI GGNNCC 2 cut(s) 93, 94
BspMAI CTGCAG 2 cut(s) 67, 297
BspOI GCTAGC 1 cut(s) 600
BspPI GGATC 2 cut(s) 405, 1137
BspQI GCTCTTC 1 cut(s) 999
BspTI CTTAAG 1 cut(s) 992
BsrDI GCAATG 2 cut(s) 369, 525
BsrI ACTGG 5 cut(s) 234, 971, 1093, 1247, 1298
BssECI CCNNGG 4 cut(s) 672, 1012, 1047, 1173
BssMI GATC 5 cut(s) 97, 310, 397, 565, 1129
BssNI GRCGYC 1 cut(s) 1055
BssT1I CCWWGG 1 cut(s) 1047
Bst2UI CCWGG 1 cut(s) 1043
Bst4CI ACNGT 5 cut(s) 328, 333, 456, 989, 1306
Bst6I CTCTTC 1 cut(s) 999
BstACI GRCGYC 1 cut(s) 1055
BstAFI CTTAAG 1 cut(s) 992
BstAPI GCANNNNNTGC 1 cut(s) 386
BstC8I GCNNGC 6 cut(s) 598, 669, 720, 766, 1230, 1234
BstDSI CCRYGG 1 cut(s) 1012
BstF5I GGATG 2 cut(s) 479, 677
BstKTI GATC 5 cut(s) 100, 313, 400, 568, 1132
BstMAI GTCTC 4 cut(s) 339, 754, 1079, 1277
BstMBI GATC 5 cut(s) 97, 310, 397, 565, 1129
BstMWI GCNNNNNNNGC 6 cut(s) 386, 418, 625, 634, 643, 1169
BstNI CCWGG 1 cut(s) 1043
BstSCI CCNGG 3 cut(s) 671, 672, 1041
BstSFI CTRYAG 3 cut(s) 63, 293, 825
BstSLI GKGCMC 1 cut(s) 966
BstV1I GCAGC 7 cut(s) 49, 279, 488, 649, 734, 1084, 1195
BstX2I RGATCY 1 cut(s) 397
BstYI RGATCY 1 cut(s) 397
BsuRI GGCC 3 cut(s) 27, 1046, 1296
BtgI CCRYGG 1 cut(s) 1012
BtrI CACGTC 1 cut(s) 289
BtsCI GGATG 2 cut(s) 479, 677
BtsIMutI CAGTG 5 cut(s) 324, 964, 966, 1254, 1305
Cac8I GCNNGC 6 cut(s) 598, 669, 720, 766, 1230, 1234
CaiI CAGNNNCTG 1 cut(s) 1304
Cfr13I GGNCC 2 cut(s) 92, 1295
Cfr9I CCCGGG 1 cut(s) 672
CseI GACGC 1 cut(s) 1063
Csp6I GTAC 3 cut(s) 329, 417, 528
CviAII CATG 4 cut(s) 128, 259, 815, 820
CviQI GTAC 3 cut(s) 329, 417, 528
DpnI GATC 5 cut(s) 99, 312, 399, 567, 1131
DpnII GATC 5 cut(s) 97, 310, 397, 565, 1129
DraIII CACNNNGTG 1 cut(s) 536
Eam1104I CTCTTC 1 cut(s) 999
EarI CTCTTC 1 cut(s) 999
Ecl136II GAGCTC 1 cut(s) 1009
Eco130I CCWWGG 1 cut(s) 1047
Eco24I GRGCYC 1 cut(s) 1011
Eco47I GGWCC 1 cut(s) 92
Eco53kI GAGCTC 1 cut(s) 1009
Eco57I CTGAAG 3 cut(s) 726, 873, 1131
Eco88I CYCGRG 2 cut(s) 672, 928
EcoICRI GAGCTC 1 cut(s) 1009
EcoO109I RGGNCCY 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 1041
EcoT14I CCWWGG 1 cut(s) 1047
EcoT38I GRGCYC 1 cut(s) 1011
ErhI CCWWGG 1 cut(s) 1047
Esp3I CGTCTC 1 cut(s) 339
FaeI CATG 4 cut(s) 131, 262, 818, 823
FalI AAGNNNNNCTT 4 cut(s) 702, 734, 975, 1007
FaqI GGGAC 2 cut(s) 105, 1066
FatI CATG 4 cut(s) 127, 258, 814, 819
FblI GTMKAC 1 cut(s) 853
Fnu4HI GCNGC 8 cut(s) 63, 293, 378, 477, 638, 723, 1098, 1184
FokI GGATG 2 cut(s) 466, 664
FriOI GRGCYC 1 cut(s) 1011
Fsp4HI GCNGC 8 cut(s) 63, 293, 378, 477, 638, 723, 1098, 1184
FspBI CTAG 3 cut(s) 23, 597, 732
GluI GCNGC 8 cut(s) 63, 293, 378, 477, 638, 723, 1098, 1184
GsaI CCCAGC 1 cut(s) 282
GsuI CTGGAG 1 cut(s) 335
HaeIII GGCC 3 cut(s) 27, 1046, 1296
HapII CCGG 1 cut(s) 673
HgaI GACGC 1 cut(s) 1063
Hin1I GRCGYC 1 cut(s) 1055
Hin1II CATG 4 cut(s) 131, 262, 818, 823
HindIII AAGCTT 2 cut(s) 716, 860
HinfI GANTC 7 cut(s) 5, 623, 878, 944, 973, 1061, 1197
HpaII CCGG 1 cut(s) 673
HphI GGTGA 3 cut(s) 296, 552, 991
Hpy166II GTNNAC 3 cut(s) 530, 854, 964
Hpy188III TCNNGA 6 cut(s) 90, 314, 424, 732, 928, 941
Hpy8I GTNNAC 3 cut(s) 530, 854, 964
Hpy99I CGWCG 2 cut(s) 33, 179
HpyAV CCTTC 1 cut(s) 1064
HpyCH4III ACNGT 5 cut(s) 328, 333, 456, 989, 1306
HpyCH4IV ACGT 6 cut(s) 35, 177, 288, 301, 357, 430
HpyF10VI GCNNNNNNNGC 6 cut(s) 386, 418, 625, 634, 643, 1169
HpySE526I ACGT 6 cut(s) 35, 177, 288, 301, 357, 430
Hsp92I GRCGYC 1 cut(s) 1055
Hsp92II CATG 4 cut(s) 131, 262, 818, 823
KflI GGGWCCC 1 cut(s) 92
Kzo9I GATC 5 cut(s) 97, 310, 397, 565, 1129
LguI GCTCTTC 1 cut(s) 999
LmnI GCTCC 2 cut(s) 664, 1014
Lsp1109I GCAGC 7 cut(s) 49, 279, 488, 649, 734, 1084, 1195
LweI GCATC 6 cut(s) 26, 364, 430, 463, 488, 686
MaeI CTAG 3 cut(s) 23, 597, 732
MaeII ACGT 6 cut(s) 35, 177, 288, 301, 357, 430
MaeIII GTNAC 5 cut(s) 284, 541, 612, 1251, 1300
MalI GATC 5 cut(s) 99, 312, 399, 567, 1131
MboI GATC 5 cut(s) 97, 310, 397, 565, 1129
MfeI CAATTG 2 cut(s) 549, 629
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 2 cut(s) 966, 1011
MlyI GAGTC 3 cut(s) 632, 953, 1191
MmeI TCCRAC 2 cut(s) 18, 1225
MroXI GAANNNNTTC 2 cut(s) 45, 739
MseI TTAA 2 cut(s) 602, 993
MslI CAYNNNNRTG 1 cut(s) 959
MspA1I CMGCKG 2 cut(s) 1097, 1186
MspCI CTTAAG 1 cut(s) 992
MspI CCGG 1 cut(s) 673
MspR9I CCNGG 3 cut(s) 673, 674, 1043
MunI CAATTG 2 cut(s) 549, 629
Mva1269I GAATGC 1 cut(s) 226
MvaI CCWGG 1 cut(s) 1043
MwoI GCNNNNNNNGC 6 cut(s) 386, 418, 625, 634, 643, 1169
NciI CCSGG 2 cut(s) 673, 674
NdeII GATC 5 cut(s) 97, 310, 397, 565, 1129
NheI GCTAGC 1 cut(s) 596
NlaIII CATG 4 cut(s) 131, 262, 818, 823
NlaIV GGNNCC 2 cut(s) 93, 94
NmeAIII GCCGAG 1 cut(s) 1198
NmuCI GTSAC 2 cut(s) 284, 1300
PaeR7I CTCGAG 1 cut(s) 928
PciSI GCTCTTC 1 cut(s) 999
PctI GAATGC 1 cut(s) 226
PdmI GAANNNNTTC 2 cut(s) 45, 739
PfeI GAWTC 4 cut(s) 5, 878, 973, 1061
Pfl23II CGTACG 1 cut(s) 416
PkrI GCNGC 8 cut(s) 64, 294, 379, 478, 639, 724, 1099, 1185
PleI GAGTC 3 cut(s) 631, 952, 1191
PpsI GAGTC 3 cut(s) 631, 952, 1191
PpuMI RGGWCCY 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 1011
Psp1406I AACGTT 2 cut(s) 35, 301
Psp5II RGGWCCY 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 1041
PspFI CCCAGC 1 cut(s) 278
PspGI CCWGG 1 cut(s) 1041
PspLI CGTACG 1 cut(s) 416
PspN4I GGNNCC 2 cut(s) 93, 94
PspPI GGNCC 2 cut(s) 92, 1295
PspPPI RGGWCCY 1 cut(s) 92
PstI CTGCAG 2 cut(s) 67, 297
PstNI CAGNNNCTG 1 cut(s) 1304
PsuI RGATCY 1 cut(s) 397
PvuII CAGCTG 2 cut(s) 1097, 1186
RsaI GTAC 3 cut(s) 330, 418, 529
RsaNI GTAC 3 cut(s) 329, 417, 528
RseI CAYNNNNRTG 1 cut(s) 959
SacI GAGCTC 1 cut(s) 1011
SapI GCTCTTC 1 cut(s) 999
SaqAI TTAA 2 cut(s) 602, 993
SatI GCNGC 8 cut(s) 63, 293, 378, 477, 638, 723, 1098, 1184
Sau3AI GATC 5 cut(s) 97, 310, 397, 565, 1129
Sau96I GGNCC 2 cut(s) 92, 1295
SchI GAGTC 3 cut(s) 632, 953, 1191
ScrFI CCNGG 3 cut(s) 673, 674, 1043
SduI GDGCHC 2 cut(s) 966, 1011
SfaNI GCATC 6 cut(s) 26, 364, 430, 463, 488, 686
SfcI CTRYAG 3 cut(s) 63, 293, 825
Sfr274I CTCGAG 1 cut(s) 928
SinI GGWCC 1 cut(s) 92
SlaI CTCGAG 1 cut(s) 928
SmaI CCCGGG 1 cut(s) 674
SmiMI CAYNNNNRTG 1 cut(s) 959
SmlI CTYRAG 6 cut(s) 350, 422, 484, 800, 928, 992
SmoI CTYRAG 6 cut(s) 350, 422, 484, 800, 928, 992
SrfI GCCCGGGC 1 cut(s) 674
SsiI CCGC 3 cut(s) 377, 1191, 1309
SspMI CTAG 3 cut(s) 23, 597, 732
SstI GAGCTC 1 cut(s) 1011
StyD4I CCNGG 3 cut(s) 671, 672, 1041
StyI CCWWGG 1 cut(s) 1047
TaaI ACNGT 5 cut(s) 328, 333, 456, 989, 1306
TaiI ACGT 6 cut(s) 38, 180, 291, 304, 360, 433
TaqI TCGA 3 cut(s) 123, 929, 947
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 4 cut(s) 5, 878, 973, 1061
Tru1I TTAA 2 cut(s) 602, 993
Tru9I TTAA 2 cut(s) 602, 993
TscAI CASTG 5 cut(s) 331, 966, 971, 1254, 1305
TseFI GTSAC 2 cut(s) 284, 1300
TseI GCWGC 7 cut(s) 62, 292, 476, 637, 722, 1097, 1183
Tsp45I GTSAC 2 cut(s) 284, 1300
TspDTI ATGAA 3 cut(s) 768, 965, 1017
TspGWI ACGGA 1 cut(s) 1001
TspMI CCCGGG 1 cut(s) 672
TspRI CASTG 5 cut(s) 331, 966, 971, 1254, 1305
Vha464I CTTAAG 1 cut(s) 992
VneI GTGCAC 1 cut(s) 962
VpaK11BI GGWCC 1 cut(s) 92
XapI RAATTY 3 cut(s) 605, 773, 916
XbaI TCTAGA 1 cut(s) 731
XcmI CCANNNNNNNNNTGG 1 cut(s) 1220
XhoI CTCGAG 1 cut(s) 928
XmaI CCCGGG 1 cut(s) 672
XmiI GTMKAC 1 cut(s) 853
XmnI GAANNNNTTC 2 cut(s) 45, 739
XspI CTAG 3 cut(s) 23, 597, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.