Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004466

Physical Location & Seq

Genomic Coordinates Reverse (-)

72809390 .. 72813355

Gene Structure 3966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG454000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGATTCCCGGCGCGCATCTCTAGGCCGCCGAATGATAAGAGACTTGGATAGGAAGAATGCAGAACTGGAAGAACAAAACAAAAATTTGGCTTCCATGCTTGAAACAAAGGAAGCCGGGAGTAATGTGCTGCAGAAACGTTTGAATGATCTGGAGCAAAATACTGTACCGTCTTTGAGGAAAGCTCTCAAGGATGTCGCAATGGAGAAAGATGCAGCAGTTGTTGCATGGGAGGATCTCTCTGCTCAGGTGCAACTCAATATGATACAGCAACAAACAATGAGTGGCTCACTTGGTGCACTAAACTCAATTGCTAATCCACCTGATCAGATAAAAACATTAGAAATTGAGTTAGCTAACATAAAGTCTGAGTTACAGATTGATTCTCAATCTTCGGAGATAGAAAGGCTTTTTGAGGAAAACTCTAATTTATCTAGTTCTCATCAGGAGGCTATGAGCATAGCTTTGCACTGGGAGAATCAGGTGAAAGACTGTCTTAAGCAAAATGAAGAGCTCCGAGGAATCTTAGATAAGTTAAGAACTGACCAGGCCAAGGGGTTGCTCGACTCCCATAGCAATGGTTCGAACAAGACTGGTTTAGCTGAATATACACCTGAAGTTCTCTCTATCAAGGATCAACTTGCAAAAGAACAGAGCAAAGCAGAGGCATTATCAGCTGAGGTATTACAGCTCTCAGCAAGACTCCAACAAACCACTCAAGCATACAATGGTCTTGCACGCCTCTATAAACCGGTGTTGCGAAACATAGAAAGCAGTCTCATTAAGATGAAACAAGATGGCCCTGATCGACAGTGCGGTAAATACAAAACTCTTGCACTACCCGTTTACATAAAGTTGGTGGAATTAGCATGTTTTTGTTCTTTAATTTTCGTAATTGTGCTCGGCATCCTTCATGTACCAAAATGTTCACTAGCCAAAACAAGGTATCCAAATCTTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

320

Amino Acids

35.81

Weight (kDa)

6.56

Isoelectric Point (pI)

54.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59210 AT5G59210
fragaria_vesca	FvH4_2g37740 FvH4_3g37100 FvH4_3g37100
malus_domestica	MD03G1084900.v1.1 MD11G1092400.v1.1
prunus_persica	Prupe.6G068200_v2.0.a1
pyrus_communis	pycom11g07770
rosa_chinensis	RchiOBHm_Chr5g0066731 RchiOBHm_Chr5g0066821
rosa_laevigata	RLG00000035876
rosa_multiflora	Rmu_sc0000605.1_g000050
rosa_roxburghii	Rroxscaffold_1G00014280 Rroxscaffold_1G00014310 Rroxscaffold_1G00014340 Rroxscaffold_1G00014360 Rroxscaffold_1G00014490 Rroxscaffold_1G00014520
rosa_rugosa	Rorug05G0379000 Rorug05G0379000
rosa_samantha	Rh5AG438200 Rh5AG438400 Rh5BG454000 Rh5BG454600 Rh5BG455400 Rh5CG476300 Rh5CG476900 Rh5CG477500 Rh5DG469100 Rh5DG470200
rosa_wichuraiana	Rw5G040960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	15
AciI	CCGC	2 cut(s)	28, 816
AclI	AACGTT	1 cut(s)	139
AclWI	GGATC	2 cut(s)	243, 642
AcsI	RAATTY	1 cut(s)	85
AcuI	CTGAAG	1 cut(s)	636
AdeI	CACNNNGTG	1 cut(s)	296
AfaI	GTAC	2 cut(s)	168, 918
AfiI	CCNNNNNNNGG	2 cut(s)	553, 942
AflII	CTTAAG	1 cut(s)	497
AgeI	ACCGGT	1 cut(s)	751
AgsI	TTSAA	2 cut(s)	104, 145
AjnI	CCWGG	1 cut(s)	546
AluBI	AGCT	7 cut(s)	185, 356, 464, 514, 602, 677, 691
AluI	AGCT	7 cut(s)	185, 356, 464, 514, 602, 677, 691
Alw21I	GWGCWC	3 cut(s)	301, 516, 903
Alw26I	GTCTC	2 cut(s)	36, 782
Alw44I	GTGCAC	1 cut(s)	297
AlwI	GGATC	2 cut(s)	243, 642
AoxI	GGCC	3 cut(s)	25, 549, 799
ApaLI	GTGCAC	1 cut(s)	297
ApeKI	GCWGC	2 cut(s)	130, 215
ApoI	RAATTY	1 cut(s)	85
AsiGI	ACCGGT	1 cut(s)	751
AspLEI	GCGC	2 cut(s)	15, 17
AspS9I	GGNCC	1 cut(s)	800
AsuC2I	CCSGG	2 cut(s)	10, 118
AsuHPI	GGTGA	1 cut(s)	496
AsuII	TTCGAA	1 cut(s)	584
BaeGI	GKGCMC	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	516
Bbv12I	GWGCWC	3 cut(s)	301, 516, 903
BbvCI	CCTCAGC	1 cut(s)	678
BbvI	GCAGC	2 cut(s)	117, 227
BccI	CCATC	1 cut(s)	791
BciT130I	CCWGG	1 cut(s)	548
BciVI	GTATCC	1 cut(s)	957
BclI	TGATCA	1 cut(s)	325
BcnI	CCSGG	2 cut(s)	10, 118
BcoDI	GTCTC	2 cut(s)	36, 782
BfaI	CTAG	3 cut(s)	23, 435, 932
BfmI	CTRYAG	1 cut(s)	131
BfrI	CTTAAG	1 cut(s)	497
BfuI	GTATCC	1 cut(s)	957
BisI	GCNGC	3 cut(s)	28, 131, 216
BlsI	GCNGC	3 cut(s)	29, 132, 217
Bme1390I	CCNGG	3 cut(s)	10, 118, 548
BmgT120I	GGNCC	1 cut(s)	800
BmrFI	CCNGG	3 cut(s)	10, 118, 548
BmrI	ACTGGG	1 cut(s)	481
BmsI	GCATC	3 cut(s)	26, 202, 915
BmuI	ACTGGG	1 cut(s)	481
BplI	GAGNNNNNCTC	6 cut(s)	169, 201, 224, 256, 407, 439
BpmI	CTGGAG	1 cut(s)	173
Bpu10I	CCTNAGC	2 cut(s)	246, 678
Bpu14I	TTCGAA	1 cut(s)	584
BpuEI	CTTGAG	2 cut(s)	173, 702
BpuMI	CCSGG	2 cut(s)	10, 118
BsaJI	CCNNGG	2 cut(s)	517, 552
BsaWI	WCCGGW	1 cut(s)	751
Bsc4I	CCNNNNNNNGG	2 cut(s)	553, 942
Bse118I	RCCGGY	1 cut(s)	751
Bse1I	ACTGG	3 cut(s)	72, 476, 598
Bse3DI	GCAATG	2 cut(s)	207, 583
BseBI	CCWGG	1 cut(s)	548
BseDI	CCNNGG	2 cut(s)	517, 552
BseGI	GGATG	2 cut(s)	199, 906
BseLI	CCNNNNNNNGG	2 cut(s)	553, 942
BseMI	GCAATG	2 cut(s)	207, 583
BseMII	CTCAG	4 cut(s)	260, 360, 669, 708
BseNI	ACTGG	3 cut(s)	72, 476, 598
BsePI	GCGCGC	1 cut(s)	13
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	2 cut(s)	117, 227
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	3 cut(s)	27, 551, 801
BshTI	ACCGGT	1 cut(s)	751
BsiHKAI	GWGCWC	3 cut(s)	301, 516, 903
BsiSI	CCGG	3 cut(s)	10, 117, 752
BslI	CCNNNNNNNGG	2 cut(s)	553, 942
BsmAI	GTCTC	2 cut(s)	36, 782
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	3 cut(s)	27, 551, 801
Bsp119I	TTCGAA	1 cut(s)	584
Bsp1286I	GDGCHC	3 cut(s)	301, 516, 903
Bsp143I	GATC	5 cut(s)	148, 235, 325, 634, 805
BspACI	CCGC	2 cut(s)	28, 816
BspANI	GGCC	3 cut(s)	27, 551, 801
BspCNI	CTCAG	4 cut(s)	259, 361, 670, 707
BspFNI	CGCG	1 cut(s)	15
BspMAI	CTGCAG	1 cut(s)	135
BspPI	GGATC	2 cut(s)	243, 642
BspQI	GCTCTTC	1 cut(s)	504
BspT104I	TTCGAA	1 cut(s)	584
BspTI	CTTAAG	1 cut(s)	497
BsrDI	GCAATG	2 cut(s)	207, 583
BsrFI	RCCGGY	1 cut(s)	751
BsrI	ACTGG	3 cut(s)	72, 476, 598
BssAI	RCCGGY	1 cut(s)	751
BssECI	CCNNGG	2 cut(s)	517, 552
BssHII	GCGCGC	1 cut(s)	13
BssMI	GATC	5 cut(s)	148, 235, 325, 634, 805
BssT1I	CCWWGG	1 cut(s)	552
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	4 cut(s)	166, 171, 494, 813
Bst6I	CTCTTC	1 cut(s)	504
BstAFI	CTTAAG	1 cut(s)	497
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstBI	TTCGAA	1 cut(s)	584
BstC8I	GCNNGC	2 cut(s)	15, 739
BstDEI	CTNAG	5 cut(s)	246, 369, 526, 678, 694
BstF5I	GGATG	2 cut(s)	199, 906
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	2 cut(s)	15, 17
BstKTI	GATC	5 cut(s)	151, 238, 328, 637, 808
BstMAI	GTCTC	2 cut(s)	36, 782
BstMBI	GATC	5 cut(s)	148, 235, 325, 634, 805
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 674
BstNI	CCWGG	1 cut(s)	548
BstNSI	RCATGY	1 cut(s)	873
BstSCI	CCNGG	3 cut(s)	8, 116, 546
BstSFI	CTRYAG	1 cut(s)	131
BstSLI	GKGCMC	1 cut(s)	301
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	2 cut(s)	117, 227
BstX2I	RGATCY	1 cut(s)	235
BstXI	CCANNNNNNTGG	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	235
BsuI	GTATCC	1 cut(s)	957
BsuRI	GGCC	3 cut(s)	27, 551, 801
BtsCI	GGATG	2 cut(s)	199, 906
BtsIMutI	CAGTG	3 cut(s)	469, 818, 958
Cac8I	GCNNGC	2 cut(s)	15, 739
CfoI	GCGC	2 cut(s)	15, 17
Cfr10I	RCCGGY	1 cut(s)	751
Cfr13I	GGNCC	1 cut(s)	800
Csp6I	GTAC	2 cut(s)	167, 917
CspAI	ACCGGT	1 cut(s)	751
CviAII	CATG	4 cut(s)	97, 228, 870, 914
CviQI	GTAC	2 cut(s)	167, 917
DdeI	CTNAG	5 cut(s)	246, 369, 526, 678, 694
DpnI	GATC	5 cut(s)	150, 237, 327, 636, 807
DpnII	GATC	5 cut(s)	148, 235, 325, 634, 805
DraIII	CACNNNGTG	1 cut(s)	296
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
Ecl136II	GAGCTC	1 cut(s)	514
Eco130I	CCWWGG	1 cut(s)	552
Eco24I	GRGCYC	1 cut(s)	516
Eco53kI	GAGCTC	1 cut(s)	514
Eco57I	CTGAAG	1 cut(s)	636
EcoICRI	GAGCTC	1 cut(s)	514
EcoRII	CCWGG	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	552
EcoT38I	GRGCYC	1 cut(s)	516
ErhI	CCWWGG	1 cut(s)	552
FaeI	CATG	4 cut(s)	100, 231, 873, 917
FalI	AAGNNNNNCTT	2 cut(s)	480, 512
FatI	CATG	4 cut(s)	96, 227, 869, 913
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	3 cut(s)	28, 131, 216
FokI	GGATG	2 cut(s)	206, 893
FriOI	GRGCYC	1 cut(s)	516
Fsp4HI	GCNGC	3 cut(s)	28, 131, 216
FspBI	CTAG	3 cut(s)	23, 435, 932
GlaI	GCGC	2 cut(s)	14, 16
GluI	GCNGC	3 cut(s)	28, 131, 216
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	3 cut(s)	27, 551, 801
HapII	CCGG	3 cut(s)	10, 117, 752
HhaI	GCGC	2 cut(s)	15, 17
Hin1II	CATG	4 cut(s)	100, 231, 873, 917
Hin6I	GCGC	2 cut(s)	13, 15
HinP1I	GCGC	2 cut(s)	13, 15
HinfI	GANTC	6 cut(s)	5, 383, 478, 522, 566, 702
HpaII	CCGG	3 cut(s)	10, 117, 752
HphI	GGTGA	1 cut(s)	496
Hpy166II	GTNNAC	3 cut(s)	299, 847, 929
Hpy188I	TCNGA	4 cut(s)	330, 370, 397, 518
Hpy188III	TCNNGA	2 cut(s)	152, 446
Hpy8I	GTNNAC	3 cut(s)	299, 847, 929
HpyAV	CCTTC	1 cut(s)	920
HpyCH4III	ACNGT	4 cut(s)	166, 171, 494, 813
HpyCH4IV	ACGT	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 674
HpyF3I	CTNAG	5 cut(s)	246, 369, 526, 678, 694
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	4 cut(s)	100, 231, 873, 917
HspAI	GCGC	2 cut(s)	13, 15
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	5 cut(s)	148, 235, 325, 634, 805
LguI	GCTCTTC	1 cut(s)	504
LmnI	GCTCC	2 cut(s)	154, 519
Lsp1109I	GCAGC	2 cut(s)	117, 227
LweI	GCATC	3 cut(s)	26, 202, 915
MaeI	CTAG	3 cut(s)	23, 435, 932
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	1 cut(s)	372
MalI	GATC	5 cut(s)	150, 237, 327, 636, 807
MboI	GATC	5 cut(s)	148, 235, 325, 634, 805
MboII	GAAGA	5 cut(s)	67, 83, 384, 521, 947
MfeI	CAATTG	1 cut(s)	309
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	3 cut(s)	301, 516, 903
MluCI	AATT	7 cut(s)	85, 309, 345, 427, 863, 885, 894
MlyI	GAGTC	2 cut(s)	560, 696
MmeI	TCCRAC	1 cut(s)	730
MnlI	CCTC	8 cut(s)	171, 226, 409, 442, 512, 658, 673, 752
MseI	TTAA	4 cut(s)	498, 536, 783, 884
MslI	CAYNNNNRTG	2 cut(s)	576, 785
MspA1I	CMGCKG	1 cut(s)	677
MspCI	CTTAAG	1 cut(s)	497
MspI	CCGG	3 cut(s)	10, 117, 752
MspR9I	CCNGG	3 cut(s)	10, 118, 548
MunI	CAATTG	1 cut(s)	309
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	548
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	224, 674
NciI	CCSGG	2 cut(s)	10, 118
NdeII	GATC	5 cut(s)	148, 235, 325, 634, 805
NlaIII	CATG	4 cut(s)	100, 231, 873, 917
NmeAIII	GCCGAG	1 cut(s)	882
NspI	RCATGY	1 cut(s)	873
NspV	TTCGAA	1 cut(s)	584
PauI	GCGCGC	1 cut(s)	13
PciSI	GCTCTTC	1 cut(s)	504
PctI	GAATGC	1 cut(s)	64
PfeI	GAWTC	4 cut(s)	5, 383, 478, 522
PinAI	ACCGGT	1 cut(s)	751
PkrI	GCNGC	3 cut(s)	29, 132, 217
PleI	GAGTC	2 cut(s)	560, 696
PpsI	GAGTC	2 cut(s)	560, 696
Psp124BI	GAGCTC	1 cut(s)	516
Psp1406I	AACGTT	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PspPI	GGNCC	1 cut(s)	800
PstI	CTGCAG	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	235
PteI	GCGCGC	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	677
RsaI	GTAC	2 cut(s)	168, 918
RsaNI	GTAC	2 cut(s)	167, 917
RseI	CAYNNNNRTG	2 cut(s)	576, 785
SacI	GAGCTC	1 cut(s)	516
SapI	GCTCTTC	1 cut(s)	504
SaqAI	TTAA	4 cut(s)	498, 536, 783, 884
SatI	GCNGC	3 cut(s)	28, 131, 216
Sau3AI	GATC	5 cut(s)	148, 235, 325, 634, 805
Sau96I	GGNCC	1 cut(s)	800
SchI	GAGTC	2 cut(s)	560, 696
ScrFI	CCNGG	3 cut(s)	10, 118, 548
SduI	GDGCHC	3 cut(s)	301, 516, 903
SfaNI	GCATC	3 cut(s)	26, 202, 915
SfcI	CTRYAG	1 cut(s)	131
SfuI	TTCGAA	1 cut(s)	584
SmiMI	CAYNNNNRTG	2 cut(s)	576, 785
SmlI	CTYRAG	3 cut(s)	188, 497, 717
SmoI	CTYRAG	3 cut(s)	188, 497, 717
Sse9I	AATT	7 cut(s)	85, 309, 345, 427, 863, 885, 894
SsiI	CCGC	2 cut(s)	28, 816
SspMI	CTAG	3 cut(s)	23, 435, 932
SstI	GAGCTC	1 cut(s)	516
StyD4I	CCNGG	3 cut(s)	8, 116, 546
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	4 cut(s)	166, 171, 494, 813
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	3 cut(s)	564, 584, 808
TasI	AATT	7 cut(s)	85, 309, 345, 427, 863, 885, 894
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	4 cut(s)	5, 383, 478, 522
Tru1I	TTAA	4 cut(s)	498, 536, 783, 884
Tru9I	TTAA	4 cut(s)	498, 536, 783, 884
TscAI	CASTG	2 cut(s)	476, 818
TseI	GCWGC	2 cut(s)	130, 215
TspDTI	ATGAA	3 cut(s)	522, 803, 902
TspRI	CASTG	2 cut(s)	476, 818
Vha464I	CTTAAG	1 cut(s)	497
VneI	GTGCAC	1 cut(s)	297
XapI	RAATTY	1 cut(s)	85
XceI	RCATGY	1 cut(s)	873
XspI	CTAG	3 cut(s)	23, 435, 932

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.