AT5G63830

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005386
Physical Location & Seq
Reverse (-)
25543331 .. 25544898
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G63830.1

Sequence Viewer

Length: 1221 bp
ATGATGCCGGAGAAGACGATTATTTCGTCGGAGAGTTCAAATTCGTCTCCGTTAAACCCTTCTTCTACGCGGATTATCTGCCATGTATGTAATAAGCAGTTCTCGCAGTACACTTGTCCTCGCTGCAACTTCCGGTACTGTTCCCTTCCTTGTTACAAATCTCACAGTGTCCAATGTACTGAATCATTCATGAGAGATAATGTAAACGATGAATTGAAGCAAGTTCGATCTGATGATCAAACGAAAAGGAAGATGCTCGAAATTTTGAAAAGGTTTCACGAAGAAGAAGAGGAAGATGATGGGGGAATTGATAGCATCACGGATGATGAAGGTTTGAGCTTACCGGAGGAGATTATTCAGAAGATAATGAACGGAGATGAAGTGAGTCTTGATGATTTGAGCTTAGAAGAGAGAAAAGGATTCCAAAGAGCCTTAGCTTCTGGAGAATTAAGCAAAATGATCCAACCATGGGATCCTTGGTGGTTACTTGCTTCAGCTCGAACGATCAATCTTGGACTCGGAGGTACACAACTTGTTCAATGCGTTGAAGACGAAGAAGAGACCACAGTTGTGAGTGAAATCCCACGAGGGCCTGATACACCTTTGATCTCACTAAGCAAGCTTACCTCCACGAATCCATCTCCTCTCTTACCAATCCATTTGATTGACATTGCATATAGTTATTGCTTTACGCTCCGTATCTATAATGGAGAGTGGCAATCTGATTCGCTTGGTGCAGCAACAATGGTGTTGACTGTTTCATCAGTTTTGGGTCACAATGGACAACCAGAGACCATAAAGGAAGTGTTGTCCTTTTGCTTGGAACAGACATGCTCTTCAGCTTATAAAAACCTTGGTGGTGGTCTGAAGTTCGGATTGAATCTGGTGGATGATGTGATTTGTTTTCTTTCTCTTGGCTCTGGAGCTATGGTATGTCTGCTCGGTGATCTCCAAAGGTTGATTCTTGGTGCAATAAAGGAAGTAAAATCATCATCAGGGCGTGATCTGAAGAAGAAACTAAAGCTTGCAGAGAGGAAAGTGTTCTACATGATGTGTTGGGTCAATGAGCAGAATTCTGAAGTATGGGAAGCTCTGGAACCATCTGTAAGGGCAGAGAAGAACTCGGTGGTTGAGCTCAACGATTACAGAGGGTTTCCAGAAATGAAGAAGAAAGATCAATTTCGAAAAGGTGGTGGCGTGGTGATTGAGGAGATAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SHQ1 zf-HIT

Protein Analysis

406

Amino Acids

45.51

Weight (kDa)

4.93

Isoelectric Point (pI)

47.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-HIT PF04438 24 - 53 5.2e-11 HIT zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 846
AccII CGCG 1 cut(s) 70
AciI CCGC 1 cut(s) 70
AclWI GGATC 3 cut(s) 454, 467, 480
AcsI RAATTY 3 cut(s) 40, 261, 1072
AcuI CTGAAG 5 cut(s) 477, 822, 887, 1028, 1098
AfaI GTAC 4 cut(s) 110, 137, 178, 526
AfiI CCNNNNNNNGG 1 cut(s) 469
AgsI TTSAA 6 cut(s) 39, 217, 268, 539, 548, 880
AjuI GAANNNNNNNTTGG 2 cut(s) 945, 977
AleI CACNNNNGTG 1 cut(s) 569
Alw21I GWGCWC 1 cut(s) 1137
Alw26I GTCTC 3 cut(s) 51, 554, 785
AlwI GGATC 3 cut(s) 454, 467, 480
AoxI GGCC 1 cut(s) 590
ApeKI GCWGC 2 cut(s) 123, 737
ApoI RAATTY 3 cut(s) 40, 261, 1072
ArsI GACNNNNNNTTYG 2 cut(s) 7, 39
Asp700I GAANNNNTTC 1 cut(s) 1040
AspS9I GGNCC 1 cut(s) 590
AsuHPI GGTGA 2 cut(s) 956, 1213
AsuII TTCGAA 1 cut(s) 1183
BamHI GGATCC 1 cut(s) 472
BanII GRGCYC 1 cut(s) 1137
BauI CACGAG 1 cut(s) 585
BbsI GAAGAC 2 cut(s) 20, 555
Bbv12I GWGCWC 1 cut(s) 1137
BbvI GCAGC 2 cut(s) 110, 749
BccI CCATC 3 cut(s) 293, 646, 1108
BclI TGATCA 1 cut(s) 235
BcoDI GTCTC 3 cut(s) 51, 554, 785
BisI GCNGC 2 cut(s) 124, 738
BlsI GCNGC 2 cut(s) 125, 739
BmgT120I GGNCC 1 cut(s) 590
BmiI GGNNCC 2 cut(s) 474, 1098
BmsI GCATC 2 cut(s) 243, 324
BpiI GAAGAC 2 cut(s) 20, 555
BplI GAGNNNNNCTC 2 cut(s) 1106, 1138
BpmI CTGGAG 2 cut(s) 462, 942
Bpu10I CCTNAGC 1 cut(s) 433
Bpu14I TTCGAA 1 cut(s) 1183
BsaI GGTCTC 2 cut(s) 554, 785
BsaJI CCNNGG 3 cut(s) 467, 476, 853
BsaWI WCCGGW 2 cut(s) 132, 343
BsaXI ACNNNNNCTCC 4 cut(s) 366, 396, 915, 945
Bsc4I CCNNNNNNNGG 1 cut(s) 469
Bse3DI GCAATG 1 cut(s) 669
BseDI CCNNGG 3 cut(s) 467, 476, 853
BseGI GGATG 2 cut(s) 328, 895
BseLI CCNNNNNNNGG 1 cut(s) 469
BseMI GCAATG 1 cut(s) 669
BseRI GAGGAG 2 cut(s) 362, 633
BseXI GCAGC 2 cut(s) 110, 749
BsgI GTGCAG 1 cut(s) 756
Bsh1236I CGCG 1 cut(s) 70
BshFI GGCC 1 cut(s) 592
BsiHKAI GWGCWC 1 cut(s) 1137
BsiSI CCGG 3 cut(s) 8, 133, 344
BslI CCNNNNNNNGG 1 cut(s) 469
BsmAI GTCTC 3 cut(s) 51, 554, 785
BsmBI CGTCTC 1 cut(s) 51
BsnI GGCC 1 cut(s) 592
Bso31I GGTCTC 2 cut(s) 554, 785
Bsp119I TTCGAA 1 cut(s) 1183
Bsp1286I GDGCHC 1 cut(s) 1137
Bsp143I GATC 9 cut(s) 227, 235, 459, 472, 504, 606, 946, 1003, 1174
Bsp19I CCATGG 1 cut(s) 467
BspACI CCGC 1 cut(s) 70
BspANI GGCC 1 cut(s) 592
BspFNI CGCG 1 cut(s) 70
BspHI TCATGA 1 cut(s) 189
BspLI GGNNCC 2 cut(s) 474, 1098
BspPI GGATC 3 cut(s) 454, 467, 480
BspQI GCTCTTC 1 cut(s) 841
BspT104I TTCGAA 1 cut(s) 1183
BspTNI GGTCTC 2 cut(s) 554, 785
BsrDI GCAATG 1 cut(s) 669
BssECI CCNNGG 3 cut(s) 467, 476, 853
BssMI GATC 9 cut(s) 227, 235, 459, 472, 504, 606, 946, 1003, 1174
BssSI CACGAG 1 cut(s) 585
BssT1I CCWWGG 3 cut(s) 467, 476, 853
Bst2BI CACGAG 1 cut(s) 585
Bst4CI ACNGT 4 cut(s) 140, 167, 568, 757
Bst6I CTCTTC 4 cut(s) 282, 402, 552, 841
BstBI TTCGAA 1 cut(s) 1183
BstC8I GCNNGC 2 cut(s) 620, 1026
BstDEI CTNAG 3 cut(s) 403, 433, 614
BstDSI CCRYGG 1 cut(s) 467
BstF5I GGATG 2 cut(s) 328, 895
BstFNI CGCG 1 cut(s) 70
BstKTI GATC 9 cut(s) 230, 238, 462, 475, 507, 609, 949, 1006, 1177
BstMAI GTCTC 3 cut(s) 51, 554, 785
BstMBI GATC 9 cut(s) 227, 235, 459, 472, 504, 606, 946, 1003, 1174
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 834
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 110, 749
BstV2I GAAGAC 2 cut(s) 20, 555
BstX2I RGATCY 1 cut(s) 472
BstYI RGATCY 1 cut(s) 472
BsuRI GGCC 1 cut(s) 592
BtgI CCRYGG 1 cut(s) 467
BtsCI GGATG 2 cut(s) 328, 895
BtsIMutI CAGTG 1 cut(s) 172
Cac8I GCNNGC 2 cut(s) 620, 1026
CciI TCATGA 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 590
Csp6I GTAC 4 cut(s) 109, 136, 177, 525
CviAII CATG 5 cut(s) 83, 190, 468, 831, 1048
CviQI GTAC 4 cut(s) 109, 136, 177, 525
DdeI CTNAG 3 cut(s) 403, 433, 614
DpnI GATC 9 cut(s) 229, 237, 461, 474, 506, 608, 948, 1005, 1176
DpnII GATC 9 cut(s) 227, 235, 459, 472, 504, 606, 946, 1003, 1174
Eam1104I CTCTTC 4 cut(s) 282, 402, 552, 841
EarI CTCTTC 4 cut(s) 282, 402, 552, 841
Ecl136II GAGCTC 1 cut(s) 1135
Eco130I CCWWGG 3 cut(s) 467, 476, 853
Eco24I GRGCYC 1 cut(s) 1137
Eco31I GGTCTC 2 cut(s) 554, 785
Eco53kI GAGCTC 1 cut(s) 1135
Eco57I CTGAAG 5 cut(s) 477, 822, 887, 1028, 1098
EcoICRI GAGCTC 1 cut(s) 1135
EcoO109I RGGNCCY 1 cut(s) 590
EcoRI GAATTC 1 cut(s) 1072
EcoT14I CCWWGG 3 cut(s) 467, 476, 853
EcoT38I GRGCYC 1 cut(s) 1137
ErhI CCWWGG 3 cut(s) 467, 476, 853
Esp3I CGTCTC 1 cut(s) 51
FaeI CATG 5 cut(s) 86, 193, 471, 834, 1051
FalI AAGNNNNNCTT 2 cut(s) 372, 404
FatI CATG 5 cut(s) 82, 189, 467, 830, 1047
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 2 cut(s) 124, 738
FokI GGATG 2 cut(s) 335, 902
FriOI GRGCYC 1 cut(s) 1137
Fsp4HI GCNGC 2 cut(s) 124, 738
GluI GCNGC 2 cut(s) 124, 738
GsuI CTGGAG 2 cut(s) 462, 942
HaeIII GGCC 1 cut(s) 592
HapII CCGG 3 cut(s) 8, 133, 344
Hin1II CATG 5 cut(s) 86, 193, 471, 834, 1051
HincII GTYRAC 1 cut(s) 753
HindII GTYRAC 1 cut(s) 753
HindIII AAGCTT 2 cut(s) 620, 1022
HinfI GANTC 8 cut(s) 182, 385, 420, 516, 634, 725, 880, 961
HpaII CCGG 3 cut(s) 8, 133, 344
HphI GGTGA 2 cut(s) 956, 1213
Hpy166II GTNNAC 4 cut(s) 111, 205, 527, 753
Hpy188I TCNGA 9 cut(s) 31, 232, 360, 521, 724, 867, 875, 1008, 1078
Hpy188III TCNNGA 7 cut(s) 190, 278, 389, 441, 921, 1094, 1157
Hpy8I GTNNAC 4 cut(s) 111, 205, 527, 753
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 3 cut(s) 69, 155, 323
HpyCH4III ACNGT 4 cut(s) 140, 167, 568, 757
HpyCH4V TGCA 5 cut(s) 126, 674, 737, 971, 1028
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 3 cut(s) 403, 433, 614
Hsp92II CATG 5 cut(s) 86, 193, 471, 834, 1051
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 9 cut(s) 227, 235, 459, 472, 504, 606, 946, 1003, 1174
LguI GCTCTTC 1 cut(s) 841
LmnI GCTCC 2 cut(s) 699, 923
Lsp1109I GCAGC 2 cut(s) 110, 749
LweI GCATC 2 cut(s) 243, 324
MaeIII GTNAC 3 cut(s) 152, 483, 773
MalI GATC 9 cut(s) 229, 237, 461, 474, 506, 608, 948, 1005, 1176
MboI GATC 9 cut(s) 227, 235, 459, 472, 504, 606, 946, 1003, 1174
MflI RGATCY 1 cut(s) 472
MhlI GDGCHC 1 cut(s) 1137
MluCI AATT 7 cut(s) 40, 212, 261, 306, 446, 1072, 1178
MlyI GAGTC 2 cut(s) 394, 510
MmeI TCCRAC 2 cut(s) 9, 487
MroXI GAANNNNTTC 1 cut(s) 1040
MseI TTAA 2 cut(s) 53, 449
MslI CAYNNNNRTG 1 cut(s) 569
MspI CCGG 3 cut(s) 8, 133, 344
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 103
NcoI CCATGG 1 cut(s) 467
NdeII GATC 9 cut(s) 227, 235, 459, 472, 504, 606, 946, 1003, 1174
NlaIII CATG 5 cut(s) 86, 193, 471, 834, 1051
NlaIV GGNNCC 2 cut(s) 474, 1098
NmuCI GTSAC 1 cut(s) 773
NspI RCATGY 1 cut(s) 834
NspV TTCGAA 1 cut(s) 1183
OliI CACNNNNGTG 1 cut(s) 569
PagI TCATGA 1 cut(s) 189
PciSI GCTCTTC 1 cut(s) 841
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 1040
PfeI GAWTC 6 cut(s) 182, 420, 634, 725, 880, 961
PkrI GCNGC 2 cut(s) 125, 739
PleI GAGTC 2 cut(s) 393, 510
PpsI GAGTC 2 cut(s) 393, 510
PsiI TTATAA 1 cut(s) 846
Psp124BI GAGCTC 1 cut(s) 1137
PspN4I GGNNCC 2 cut(s) 474, 1098
PspPI GGNCC 1 cut(s) 590
PsuI RGATCY 1 cut(s) 472
RsaI GTAC 4 cut(s) 110, 137, 178, 526
RsaNI GTAC 4 cut(s) 109, 136, 177, 525
RseI CAYNNNNRTG 1 cut(s) 569
SacI GAGCTC 1 cut(s) 1137
SapI GCTCTTC 1 cut(s) 841
SaqAI TTAA 2 cut(s) 53, 449
SatI GCNGC 2 cut(s) 124, 738
Sau3AI GATC 9 cut(s) 227, 235, 459, 472, 504, 606, 946, 1003, 1174
Sau96I GGNCC 1 cut(s) 590
SchI GAGTC 2 cut(s) 394, 510
SduI GDGCHC 1 cut(s) 1137
SfaNI GCATC 2 cut(s) 243, 324
SfuI TTCGAA 1 cut(s) 1183
SmiMI CAYNNNNRTG 1 cut(s) 569
Sse9I AATT 7 cut(s) 40, 212, 261, 306, 446, 1072, 1178
SsiI CCGC 1 cut(s) 70
SstI GAGCTC 1 cut(s) 1137
StyI CCWWGG 3 cut(s) 467, 476, 853
TaaI ACNGT 4 cut(s) 140, 167, 568, 757
TaqI TCGA 4 cut(s) 226, 258, 499, 1183
TasI AATT 7 cut(s) 40, 212, 261, 306, 446, 1072, 1178
TatI WGTACW 2 cut(s) 108, 176
TfiI GAWTC 6 cut(s) 182, 420, 634, 725, 880, 961
Tru1I TTAA 2 cut(s) 53, 449
Tru9I TTAA 2 cut(s) 53, 449
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 1 cut(s) 773
TseI GCWGC 2 cut(s) 123, 737
Tsp45I GTSAC 1 cut(s) 773
TspDTI ATGAA 7 cut(s) 178, 225, 342, 383, 393, 750, 1178
TspGWI ACGGA 4 cut(s) 39, 335, 387, 686
TspRI CASTG 1 cut(s) 172
XapI RAATTY 3 cut(s) 40, 261, 1072
XceI RCATGY 1 cut(s) 834
XcmI CCANNNNNNNNNTGG 1 cut(s) 474
XmnI GAANNNNTTC 1 cut(s) 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.