Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005386

Physical Location & Seq

Genomic Coordinates Reverse (-)

5007441 .. 5007848

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG064600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTCGTGCTCTCCGTGTCATCAGTATTGGGTCAAGGAGGGCAGCCGGAGACTGTCCTGGAAGCTCTATCTTATTGCTTGGAGCAGACCTGCTCTCCAGCTTTCAGACAGATGGGTGGCTTGCAGTTTGGACTAGGTCTCGTAGACGATGTAATAACCCTATTAACATTAGGAACCGCATTGCTGTGCTTGCTTTGTGATCTGCAGAGGATGGTCCAGGCCGGGGAGACCGAGCTGAAATCAGAGAAACCACGAAAATCAAGAAGAGCTGAAATTAGGAGTACGCTGAAGCAGGCCGAAAGGAAAATCTACTTCCTCAAGTGGTGGGTCCGCGAGCAACCTGGGGAAGCTTGGTCTTCCTTAGGAGTCATCGCAAGGGCAGAGAAAAAGTTCATAGCTAAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SHQ1 zf-HIT

Protein Analysis

135

Amino Acids

15.01

Weight (kDa)

9.0

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63830
fragaria_vesca	FvH4_4g16080 FvH4_4g16080 FvH4_4g16080 FvH4_4g16080
malus_domestica	MD06G1114600.v1.1
prunus_persica	Prupe.5G127300_v2.0.a1
pyrus_communis	pycom06g10740
rosa_chinensis	RchiOBHm_Chr7g0184121 RchiOBHm_Chr7g0186571
rosa_laevigata	RLG00000004831
rosa_multiflora	Rmu_sc0000645.1_g000018 Rmu_sc0004712.1_g000003 Rmu_sc0025350.1_g000008
rosa_roxburghii	Rroxscaffold_3G00268020 Rroxscaffold_3G00269860
rosa_rugosa	Rorug06G0463200 Rorug06G0475200
rosa_samantha	Rh7AG065800 Rh7AG082600 Rh7BG064400 Rh7BG081700 Rh7CG065000 Rh7CG082000 Rh7DG064600 Rh7DG083000
rosa_wichuraiana	Rw7G005300 Rw7G006900 Rw7G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	1 cut(s)	333
AciI	CCGC	2 cut(s)	177, 331
AcuI	CTGAAG	1 cut(s)	308
AfaI	GTAC	1 cut(s)	283
AfiI	CCNNNNNNNGG	1 cut(s)	223
AjnI	CCWGG	3 cut(s)	57, 216, 340
AluBI	AGCT	6 cut(s)	65, 101, 235, 269, 350, 398
AluI	AGCT	6 cut(s)	65, 101, 235, 269, 350, 398
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	3 cut(s)	44, 143, 221
AoxI	GGCC	2 cut(s)	219, 294
ApeKI	GCWGC	1 cut(s)	43
Asp700I	GAANNNNTTC	1 cut(s)	389
AspS9I	GGNCC	2 cut(s)	214, 328
AsuC2I	CCSGG	1 cut(s)	223
AvaII	GGWCC	2 cut(s)	214, 328
AxyI	CCTNAGG	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	2 cut(s)	106, 205
BciT130I	CCWGG	3 cut(s)	59, 218, 342
BcnI	CCSGG	1 cut(s)	223
BcoDI	GTCTC	3 cut(s)	44, 143, 221
BfaI	CTAG	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	98
BisI	GCNGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	45
Bme1390I	CCNGG	4 cut(s)	59, 218, 223, 342
Bme18I	GGWCC	2 cut(s)	214, 328
BmgT120I	GGNCC	2 cut(s)	214, 328
BmiI	GGNNCC	2 cut(s)	175, 329
BmrFI	CCNGG	4 cut(s)	59, 218, 223, 342
BpiI	GAAGAC	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	302
BpuMI	CCSGG	1 cut(s)	223
BsaI	GGTCTC	2 cut(s)	143, 221
BsaJI	CCNNGG	2 cut(s)	222, 341
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse21I	CCTNAGG	1 cut(s)	361
Bse3DI	GCAATG	1 cut(s)	179
BseBI	CCWGG	3 cut(s)	59, 218, 342
BseDI	CCNNGG	2 cut(s)	222, 341
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	55
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	2 cut(s)	221, 296
BsiHKAI	GWGCWC	1 cut(s)	12
BsiSI	CCGG	2 cut(s)	47, 222
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	3 cut(s)	44, 143, 221
BsnI	GGCC	2 cut(s)	221, 296
Bso31I	GGTCTC	2 cut(s)	143, 221
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	2 cut(s)	177, 331
BspANI	GGCC	2 cut(s)	221, 296
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	175, 329
BspMAI	CTGCAG	1 cut(s)	207
BspMI	ACCTGC	1 cut(s)	98
BspQI	GCTCTTC	1 cut(s)	259
BspTNI	GGTCTC	2 cut(s)	143, 221
BsrDI	GCAATG	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	222, 341
BssMI	GATC	1 cut(s)	199
Bst2UI	CCWGG	3 cut(s)	59, 218, 342
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	259
BstC8I	GCNNGC	4 cut(s)	122, 191, 294, 335
BstDEI	CTNAG	1 cut(s)	361
BstF5I	GGATG	1 cut(s)	216
BstFNI	CGCG	1 cut(s)	333
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	3 cut(s)	44, 143, 221
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstNI	CCWGG	3 cut(s)	59, 218, 342
BstSCI	CCNGG	4 cut(s)	57, 216, 221, 340
BstSFI	CTRYAG	1 cut(s)	203
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	55
BstV2I	GAAGAC	1 cut(s)	348
Bsu36I	CCTNAGG	1 cut(s)	361
BsuRI	GGCC	2 cut(s)	221, 296
BtgZI	GCGATG	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	216
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	4 cut(s)	122, 191, 294, 335
Cfr13I	GGNCC	2 cut(s)	214, 328
Csp6I	GTAC	1 cut(s)	282
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	1 cut(s)	361
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
Eco31I	GGTCTC	2 cut(s)	143, 221
Eco47I	GGWCC	2 cut(s)	214, 328
Eco57I	CTGAAG	1 cut(s)	308
Eco81I	CCTNAGG	1 cut(s)	361
EcoRII	CCWGG	3 cut(s)	57, 216, 340
FaiI	YATR	2 cut(s)	395, 406
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	44
FokI	GGATG	1 cut(s)	223
Fsp4HI	GCNGC	1 cut(s)	44
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	1 cut(s)	44
GsuI	CTGGAG	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	221, 296
HapII	CCGG	2 cut(s)	47, 222
HindIII	AAGCTT	1 cut(s)	348
HinfI	GANTC	1 cut(s)	366
HpaII	CCGG	2 cut(s)	47, 222
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	2 cut(s)	107, 244
Hpy188III	TCNNGA	1 cut(s)	261
Hpy8I	GTNNAC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4V	TGCA	2 cut(s)	124, 205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	1 cut(s)	361
Kzo9I	GATC	1 cut(s)	199
LguI	GCTCTTC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	82
Lsp1109I	GCAGC	1 cut(s)	55
MaeI	CTAG	1 cut(s)	134
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	2 cut(s)	276, 348
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	1 cut(s)	273
MlyI	GAGTC	1 cut(s)	375
MnlI	CCTC	3 cut(s)	32, 201, 326
MroXI	GAANNNNTTC	1 cut(s)	389
MseI	TTAA	1 cut(s)	164
MslI	CAYNNNNRTG	1 cut(s)	184
MspI	CCGG	2 cut(s)	47, 222
MspR9I	CCNGG	4 cut(s)	59, 218, 223, 342
MvaI	CCWGG	3 cut(s)	59, 218, 342
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	1 cut(s)	190
NciI	CCSGG	1 cut(s)	223
NdeII	GATC	1 cut(s)	199
NlaIV	GGNNCC	2 cut(s)	175, 329
PciSI	GCTCTTC	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	389
PflFI	GACNNNGTC	1 cut(s)	135
PfoI	TCCNGGA	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	45
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
Psp6I	CCWGG	3 cut(s)	57, 216, 340
PspGI	CCWGG	3 cut(s)	57, 216, 340
PspN4I	GGNNCC	2 cut(s)	175, 329
PspPI	GGNCC	2 cut(s)	214, 328
PstI	CTGCAG	1 cut(s)	207
PsyI	GACNNNGTC	1 cut(s)	135
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
RseI	CAYNNNNRTG	1 cut(s)	184
SapI	GCTCTTC	1 cut(s)	259
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	2 cut(s)	214, 328
SchI	GAGTC	1 cut(s)	375
ScrFI	CCNGG	4 cut(s)	59, 218, 223, 342
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	9 cut(s)	67, 92, 103, 139, 237, 271, 343, 352, 400
SfcI	CTRYAG	1 cut(s)	203
SinI	GGWCC	2 cut(s)	214, 328
SmiMI	CAYNNNNRTG	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	1 cut(s)	273
SsiI	CCGC	2 cut(s)	177, 331
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	4 cut(s)	57, 216, 221, 340
TaaI	ACNGT	1 cut(s)	55
TaqII	GACCGA	1 cut(s)	245
TasI	AATT	1 cut(s)	273
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TseI	GCWGC	1 cut(s)	43
TspDTI	ATGAA	1 cut(s)	382
TspGWI	ACGGA	1 cut(s)	4
Tth111I	GACNNNGTC	1 cut(s)	135
VpaK11BI	GGWCC	2 cut(s)	214, 328
XmiI	GTMKAC	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.