Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005386

Physical Location & Seq

Genomic Coordinates Reverse (-)

4837109 .. 4837734

Gene Structure 626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16428

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTCACCAGAAGATGATCAAGAAAGCAGTCAAGCAAGTGAGATTCCACCAGGTCCTGAGACACCACTGCCTCCCCTCAGCAAGCTTAGTTCCGCAAAGCCATCACCATTCTTAGCTGTTCATCTGGTTGACATTATATACAGCTACTGCTTCGCTCTTAGTCTCTACAATAGTGATTGGCAATCAGATGCCACAGGCTCAGCTATGGTCGTGCTCTCCGTGTCATCAGTATTGGGTCAAGGAGGGCAGCCGGAGACTGTCCTGGAAGCTCTATCTTATTGCTTGGAGCAGACCTGCTCTCCAGCTTTCAGACAGATGGGTGGCTTGCAGTTTGGACTAGGTCTCGTAGACGATGTAATAACCCTATTAACATTAGGAACCGCATTGCTGTGCTTGCTTTGTGATCTGCAGAGGATGGTCCAGGCCGGGGAGACCGAGCTGAAATCAGAGAAACCACGAAAATCAAGAAGAGCTGAAATTAGGAGTACGCTGAAGCAGGCCGAAAGGAAAATCTACTTCCTCAAGTGGTGGGTCCGCGAGCAACCTGGGGAAGCTTGGTCTTCCTTAGGAGTCATCGCAAGGGCAGAGAAAAAGTTCATAGCTAAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SHQ1 zf-HIT

Protein Analysis

203

Amino Acids

22.28

Weight (kDa)

5.32

Isoelectric Point (pI)

52.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63830
fragaria_vesca	FvH4_4g16080 FvH4_4g16080 FvH4_4g16080 FvH4_4g16080
malus_domestica	MD06G1114600.v1.1
prunus_persica	Prupe.5G127300_v2.0.a1
pyrus_communis	pycom06g10740
rosa_chinensis	RchiOBHm_Chr7g0184121 RchiOBHm_Chr7g0186571
rosa_laevigata	RLG00000004831
rosa_multiflora	Rmu_sc0000645.1_g000018 Rmu_sc0004712.1_g000003 Rmu_sc0025350.1_g000008
rosa_roxburghii	Rroxscaffold_3G00268020 Rroxscaffold_3G00269860
rosa_rugosa	Rorug06G0463200 Rorug06G0475200
rosa_samantha	Rh7AG065800 Rh7AG082600 Rh7BG064400 Rh7BG081700 Rh7CG065000 Rh7CG082000 Rh7DG064600 Rh7DG083000
rosa_wichuraiana	Rw7G005300 Rw7G006900 Rw7G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	302
AccI	GTMKAC	1 cut(s)	348
AccII	CGCG	1 cut(s)	537
AciI	CCGC	3 cut(s)	93, 381, 535
AcuI	CTGAAG	1 cut(s)	512
AfaI	GTAC	1 cut(s)	487
AfiI	CCNNNNNNNGG	1 cut(s)	427
AjnI	CCWGG	4 cut(s)	49, 261, 420, 544
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	5 cut(s)	53, 167, 248, 347, 425
AlwNI	CAGNNNCTG	2 cut(s)	56, 147
AoxI	GGCC	2 cut(s)	423, 498
ApeKI	GCWGC	1 cut(s)	247
Asp700I	GAANNNNTTC	1 cut(s)	593
AspS9I	GGNCC	3 cut(s)	53, 418, 532
AsuC2I	CCSGG	1 cut(s)	427
AsuHPI	GGTGA	1 cut(s)	96
AvaII	GGWCC	3 cut(s)	53, 418, 532
AxyI	CCTNAGG	1 cut(s)	565
BbsI	GAAGAC	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	216
BbvCI	CCTCAGC	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	3 cut(s)	109, 310, 409
BciT130I	CCWGG	4 cut(s)	51, 263, 422, 546
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	427
BcoDI	GTCTC	5 cut(s)	53, 167, 248, 347, 425
BfaI	CTAG	1 cut(s)	338
BfmI	CTRYAG	1 cut(s)	407
BfuAI	ACCTGC	1 cut(s)	302
BisI	GCNGC	1 cut(s)	248
BlpI	GCTNAGC	1 cut(s)	199
BlsI	GCNGC	1 cut(s)	249
Bme1390I	CCNGG	5 cut(s)	51, 263, 422, 427, 546
Bme18I	GGWCC	3 cut(s)	53, 418, 532
BmgT120I	GGNCC	3 cut(s)	53, 418, 532
BmiI	GGNNCC	2 cut(s)	379, 533
BmrFI	CCNGG	5 cut(s)	51, 263, 422, 427, 546
BmsI	GCATC	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	552
BpmI	CTGGAG	1 cut(s)	285
Bpu10I	CCTNAGC	1 cut(s)	77
Bpu1102I	GCTNAGC	1 cut(s)	199
BpuEI	CTTGAG	1 cut(s)	506
BpuMI	CCSGG	1 cut(s)	427
BsaI	GGTCTC	2 cut(s)	347, 425
BsaJI	CCNNGG	2 cut(s)	426, 545
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse21I	CCTNAGG	1 cut(s)	565
Bse3DI	GCAATG	1 cut(s)	383
BseBI	CCWGG	4 cut(s)	51, 263, 422, 546
BseDI	CCNNGG	2 cut(s)	426, 545
BseGI	GGATG	1 cut(s)	420
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMI	GCAATG	1 cut(s)	383
BseMII	CTCAG	3 cut(s)	48, 91, 213
BseXI	GCAGC	1 cut(s)	259
Bsh1236I	CGCG	1 cut(s)	537
BshFI	GGCC	2 cut(s)	425, 500
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	2 cut(s)	251, 426
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	5 cut(s)	53, 167, 248, 347, 425
BsnI	GGCC	2 cut(s)	425, 500
Bso31I	GGTCTC	2 cut(s)	347, 425
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	16, 403
Bsp1720I	GCTNAGC	1 cut(s)	199
BspACI	CCGC	3 cut(s)	93, 381, 535
BspANI	GGCC	2 cut(s)	425, 500
BspCNI	CTCAG	3 cut(s)	49, 90, 212
BspFNI	CGCG	1 cut(s)	537
BspLI	GGNNCC	2 cut(s)	379, 533
BspMAI	CTGCAG	1 cut(s)	411
BspMI	ACCTGC	1 cut(s)	302
BspQI	GCTCTTC	1 cut(s)	463
BspTNI	GGTCTC	2 cut(s)	347, 425
BsrDI	GCAATG	1 cut(s)	383
BssECI	CCNNGG	2 cut(s)	426, 545
BssMI	GATC	2 cut(s)	16, 403
Bst2UI	CCWGG	4 cut(s)	51, 263, 422, 546
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	1 cut(s)	463
BstC8I	GCNNGC	5 cut(s)	83, 326, 395, 498, 539
BstDEI	CTNAG	7 cut(s)	57, 77, 86, 112, 158, 199, 565
BstF5I	GGATG	1 cut(s)	420
BstFNI	CGCG	1 cut(s)	537
BstKTI	GATC	2 cut(s)	19, 406
BstMAI	GTCTC	5 cut(s)	53, 167, 248, 347, 425
BstMBI	GATC	2 cut(s)	16, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	394
BstNI	CCWGG	4 cut(s)	51, 263, 422, 546
BstSCI	CCNGG	5 cut(s)	49, 261, 420, 425, 544
BstSFI	CTRYAG	1 cut(s)	407
BstUI	CGCG	1 cut(s)	537
BstV1I	GCAGC	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	552
Bsu36I	CCTNAGG	1 cut(s)	565
BsuRI	GGCC	2 cut(s)	425, 500
BtgZI	GCGATG	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	420
BtsI	GCAGTG	1 cut(s)	65
BtsIMutI	CAGTG	1 cut(s)	65
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	5 cut(s)	83, 326, 395, 498, 539
CaiI	CAGNNNCTG	2 cut(s)	56, 147
Cfr13I	GGNCC	3 cut(s)	53, 418, 532
CsiI	ACCWGGT	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	486
CviQI	GTAC	1 cut(s)	486
DdeI	CTNAG	7 cut(s)	57, 77, 86, 112, 158, 199, 565
DpnI	GATC	2 cut(s)	18, 405
DpnII	GATC	2 cut(s)	16, 403
Eam1104I	CTCTTC	1 cut(s)	463
EarI	CTCTTC	1 cut(s)	463
Eco31I	GGTCTC	2 cut(s)	347, 425
Eco47I	GGWCC	3 cut(s)	53, 418, 532
Eco57I	CTGAAG	1 cut(s)	512
Eco81I	CCTNAGG	1 cut(s)	565
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRII	CCWGG	4 cut(s)	49, 261, 420, 544
FaiI	YATR	5 cut(s)	137, 139, 206, 599, 610
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	1 cut(s)	248
FokI	GGATG	1 cut(s)	427
Fsp4HI	GCNGC	1 cut(s)	248
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	1 cut(s)	248
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	2 cut(s)	425, 500
HapII	CCGG	2 cut(s)	251, 426
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	2 cut(s)	83, 552
HinfI	GANTC	2 cut(s)	43, 570
HpaII	CCGG	2 cut(s)	251, 426
HphI	GGTGA	1 cut(s)	96
Hpy166II	GTNNAC	2 cut(s)	130, 349
Hpy188I	TCNGA	3 cut(s)	187, 311, 448
Hpy188III	TCNNGA	3 cut(s)	20, 56, 465
Hpy8I	GTNNAC	2 cut(s)	130, 349
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4V	TGCA	2 cut(s)	328, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	394
HpyF3I	CTNAG	7 cut(s)	57, 77, 86, 112, 158, 199, 565
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	16, 403
LguI	GCTCTTC	1 cut(s)	463
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	1 cut(s)	178
MabI	ACCWGGT	1 cut(s)	49
MaeI	CTAG	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	2 cut(s)	18, 405
MboI	GATC	2 cut(s)	16, 403
MboII	GAAGA	3 cut(s)	23, 480, 552
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	1 cut(s)	477
MlyI	GAGTC	1 cut(s)	579
MnlI	CCTC	5 cut(s)	81, 86, 236, 405, 530
MroXI	GAANNNNTTC	1 cut(s)	593
MseI	TTAA	1 cut(s)	368
MslI	CAYNNNNRTG	1 cut(s)	388
MspI	CCGG	2 cut(s)	251, 426
MspR9I	CCNGG	5 cut(s)	51, 263, 422, 427, 546
MvaI	CCWGG	4 cut(s)	51, 263, 422, 546
MvnI	CGCG	1 cut(s)	537
MwoI	GCNNNNNNNGC	1 cut(s)	394
NciI	CCSGG	1 cut(s)	427
NdeII	GATC	2 cut(s)	16, 403
NlaIV	GGNNCC	2 cut(s)	379, 533
NmuCI	GTSAC	1 cut(s)	3
PciSI	GCTCTTC	1 cut(s)	463
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	593
PfeI	GAWTC	1 cut(s)	43
PflFI	GACNNNGTC	1 cut(s)	339
PfoI	TCCNGGA	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	249
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
PpuMI	RGGWCCY	1 cut(s)	53
Psp5II	RGGWCCY	1 cut(s)	53
Psp6I	CCWGG	4 cut(s)	49, 261, 420, 544
PspGI	CCWGG	4 cut(s)	49, 261, 420, 544
PspN4I	GGNNCC	2 cut(s)	379, 533
PspPI	GGNCC	3 cut(s)	53, 418, 532
PspPPI	RGGWCCY	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	411
PstNI	CAGNNNCTG	2 cut(s)	56, 147
PsyI	GACNNNGTC	1 cut(s)	339
RsaI	GTAC	1 cut(s)	487
RsaNI	GTAC	1 cut(s)	486
RseI	CAYNNNNRTG	1 cut(s)	388
SapI	GCTCTTC	1 cut(s)	463
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	1 cut(s)	248
Sau3AI	GATC	2 cut(s)	16, 403
Sau96I	GGNCC	3 cut(s)	53, 418, 532
SchI	GAGTC	1 cut(s)	579
ScrFI	CCNGG	5 cut(s)	51, 263, 422, 427, 546
SduI	GDGCHC	1 cut(s)	216
SexAI	ACCWGGT	1 cut(s)	49
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	1 cut(s)	407
SinI	GGWCC	3 cut(s)	53, 418, 532
SmiMI	CAYNNNNRTG	1 cut(s)	388
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	1 cut(s)	477
SsiI	CCGC	3 cut(s)	93, 381, 535
SspMI	CTAG	1 cut(s)	338
StyD4I	CCNGG	5 cut(s)	49, 261, 420, 425, 544
TaaI	ACNGT	1 cut(s)	259
TaqII	GACCGA	1 cut(s)	449
TasI	AATT	1 cut(s)	477
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TscAI	CASTG	1 cut(s)	72
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	2 cut(s)	110, 586
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	1 cut(s)	72
Tth111I	GACNNNGTC	1 cut(s)	339
VpaK11BI	GGWCC	3 cut(s)	53, 418, 532
XmiI	GTMKAC	1 cut(s)	348
XmnI	GAANNNNTTC	1 cut(s)	593
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.