Rw7G006900

Zinc finger HIT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0005386
Physical Location & Seq
Forward (+)
5898523 .. 5900625
2103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G006900.1

Sequence Viewer

Length: 1245 bp
ATGGCGGACTCCATAATCACCTCTGAGAAACCCTCCACCTCGTCCCCTCTCGACCCTCCTTCCCGCATCGTCTGCCACGTTTGCCAGAAGCAGTTTTCACAGTACACGTGTCCTCGATGCAACTCACGCTACTGCTCTCTTCACTGCTACAAGTCTCATAATATTCGATGCACCGAGTCGTTTATGCGAGATAATGTGGTTGGGGAGCTAGGGCAATTGGGGCCGAATGACCAAACGAAGCAGAAGATGATGGACATTCTGAAAAGGTTTCACTCTGAAGATGAAGCTGATGGCATGGATGAGGATGTGGATGCTGATTCTGCACTGTCTGAGGAGACTATTAAAAAAGTGCTGTCTGGAGGTGAAGTTAGTTTTGATGATCTATCTGCAGAAGAGAAGAAACTATTCCAAAGAGCTGTTGCTTCTGGAGAACTGAGCAAGATGATTAAGCCTTGGGATCCTTGGTGGTTGAAGCCTTCTGCCAGGACAATATCCTTCAGCAAAGAAGGAACCCAACTTATCCAACCGCTTGCCAAAGAGGACGAACCAATGTCACCAGAAGAGGATCAAGAAAGCAGTCAAGCAAGTGAGATTCCACCAGGTCCTGAGACACCACTGCCTCCCCTCAGCAAGCTTAGTTCCGCGAAGCCATCGCCATTCTTAGCTGTTCATCTGGTCGACATTATATACAGCTACTGCTTTGCTCTTCGTCTCTACAATGGTGATTGGCAATCAGATGCCACAGGCTCAGCTATGGTAGTGCTCTCCGTGTCATCTGTATTGGGTCAAGGAGGGCAGCCGGGGACCGTCCTGGAAGCTCTATCTTATTGCTTGGAGCAGACCTGCTCTCCGGCTTTCAGACAGATGGGTGGCTTGCAGTTTGGACTAGGTCTCGTAGATGATGTAATAACCCTATTAACATTAGGAACCCCTGCATTGCTGTGCTTGCTTTGTGACCTGCAGAGGATGGTCCAGGCCGGGGAGACCGAGCTGAAATCAGAGAAACCACGAAAATCAAGAAGAGCTGAAATTAGGAGTAAGCTGAAGCAGGCCGAAAGGAAAATCTACTTCCTCATGTGTTGGGTCCACGAGCAACCTGGGGAAGCTTGGTCTTCCTTAGGAGCCATCGTAAGGGCAGAGAAGAGTTCAGCTATGAACTATGAAGCTGTCTCAAGGTCTGGCAAACCGGACAACAAAGCAGAACCCAGGAGCAAAGTTTTGATTCAAGAGATTAAAGATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SHQ1 zf-HIT

Protein Analysis

414

Amino Acids

45.84

Weight (kDa)

5.32

Isoelectric Point (pI)

50.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-HIT PF04438 22 - 51 2e-10 HIT zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 851, 966
AccI GTMKAC 1 cut(s) 678
AccII CGCG 1 cut(s) 644
AciI CCGC 4 cut(s) 5, 64, 527, 642
AclWI GGATC 3 cut(s) 452, 465, 573
AcuI CTGAAG 3 cut(s) 297, 481, 1064
AcvI CACGTG 1 cut(s) 108
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 2 cut(s) 979, 1131
AflIII ACRYGT 2 cut(s) 105, 107
AgsI TTSAA 2 cut(s) 472, 1226
AjnI CCWGG 6 cut(s) 482, 598, 810, 972, 1096, 1205
Alw21I GWGCWC 1 cut(s) 765
Alw26I GTCTC 7 cut(s) 159, 329, 602, 716, 896, 977, 1174
AlwI GGATC 3 cut(s) 452, 465, 573
AlwNI CAGNNNCTG 2 cut(s) 605, 696
AoxI GGCC 3 cut(s) 221, 975, 1050
ApeKI GCWGC 1 cut(s) 796
Asp700I GAANNNNTTC 1 cut(s) 404
AspS9I GGNCC 5 cut(s) 221, 602, 804, 970, 1084
AsuC2I CCSGG 2 cut(s) 801, 979
AsuHPI GGTGA 4 cut(s) 10, 374, 546, 734
AvaII GGWCC 4 cut(s) 602, 804, 970, 1084
AxyI CCTNAGG 1 cut(s) 1117
BamHI GGATCC 1 cut(s) 457
BauI CACGAG 1 cut(s) 1088
BbrPI CACGTG 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 1104
Bbv12I GWGCWC 1 cut(s) 765
BbvCI CCTCAGC 1 cut(s) 626
BbvI GCAGC 1 cut(s) 808
BccI CCATC 6 cut(s) 244, 284, 658, 859, 961, 1133
BciT130I CCWGG 6 cut(s) 484, 600, 812, 974, 1098, 1207
BcnI CCSGG 2 cut(s) 801, 979
BcoDI GTCTC 7 cut(s) 159, 329, 602, 716, 896, 977, 1174
BfaI CTAG 3 cut(s) 209, 887, 1243
BfmI CTRYAG 2 cut(s) 387, 959
BfuAI ACCTGC 2 cut(s) 851, 966
BisI GCNGC 1 cut(s) 797
BlpI GCTNAGC 1 cut(s) 748
BlsI GCNGC 1 cut(s) 798
Bme1390I CCNGG 8 cut(s) 484, 600, 801, 812, 974, 979, 1098, 1207
Bme18I GGWCC 4 cut(s) 602, 804, 970, 1084
BmgT120I GGNCC 5 cut(s) 221, 602, 804, 970, 1084
BmiI GGNNCC 7 cut(s) 222, 459, 511, 805, 928, 1085, 1123
BmrFI CCNGG 8 cut(s) 484, 600, 801, 812, 974, 979, 1098, 1207
BmsI GCATC 5 cut(s) 75, 107, 158, 301, 727
BpiI GAAGAC 1 cut(s) 1104
BplI GAGNNNNNCTC 2 cut(s) 17, 49
BpmI CTGGAG 2 cut(s) 378, 447
Bpu10I CCTNAGC 1 cut(s) 626
Bpu1102I GCTNAGC 1 cut(s) 748
BpuEI CTTGAG 1 cut(s) 1156
BpuMI CCSGG 2 cut(s) 801, 979
BsaAI YACGTR 1 cut(s) 108
BsaI GGTCTC 2 cut(s) 896, 977
BsaJI CCNNGG 6 cut(s) 452, 461, 800, 978, 1097, 1205
BsaWI WCCGGW 1 cut(s) 1186
BsaXI ACNNNNNCTCC 6 cut(s) 351, 381, 832, 862, 1113, 1143
Bsc4I CCNNNNNNNGG 2 cut(s) 979, 1131
Bse21I CCTNAGG 1 cut(s) 1117
Bse3DI GCAATG 1 cut(s) 935
BseBI CCWGG 6 cut(s) 484, 600, 812, 974, 1098, 1207
BseDI CCNNGG 6 cut(s) 452, 461, 800, 978, 1097, 1205
BseGI GGATG 4 cut(s) 304, 310, 316, 972
BseLI CCNNNNNNNGG 2 cut(s) 979, 1131
BseMI GCAATG 1 cut(s) 935
BseMII CTCAG 6 cut(s) 15, 321, 425, 597, 640, 762
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 1 cut(s) 808
BsgI GTGCAG 1 cut(s) 306
Bsh1236I CGCG 1 cut(s) 644
BshFI GGCC 3 cut(s) 223, 977, 1052
BsiHKAI GWGCWC 1 cut(s) 765
BsiSI CCGG 4 cut(s) 800, 851, 978, 1187
BslFI GGGAC 2 cut(s) 28, 817
BslI CCNNNNNNNGG 2 cut(s) 979, 1131
BsmAI GTCTC 7 cut(s) 159, 329, 602, 716, 896, 977, 1174
BsmBI CGTCTC 1 cut(s) 716
BsmFI GGGAC 2 cut(s) 28, 817
BsnI GGCC 3 cut(s) 223, 977, 1052
Bso31I GGTCTC 2 cut(s) 896, 977
Bsp1286I GDGCHC 1 cut(s) 765
Bsp143I GATC 3 cut(s) 379, 457, 565
Bsp1720I GCTNAGC 1 cut(s) 748
BspACI CCGC 4 cut(s) 5, 64, 527, 642
BspANI GGCC 3 cut(s) 223, 977, 1052
BspCNI CTCAG 6 cut(s) 16, 322, 426, 598, 639, 761
BspFNI CGCG 1 cut(s) 644
BspLI GGNNCC 7 cut(s) 222, 459, 511, 805, 928, 1085, 1123
BspMAI CTGCAG 2 cut(s) 391, 963
BspMI ACCTGC 2 cut(s) 851, 966
BspPI GGATC 3 cut(s) 452, 465, 573
BspQI GCTCTTC 2 cut(s) 711, 1015
BspTNI GGTCTC 2 cut(s) 896, 977
BsrDI GCAATG 1 cut(s) 935
BssECI CCNNGG 6 cut(s) 452, 461, 800, 978, 1097, 1205
BssMI GATC 3 cut(s) 379, 457, 565
BssSI CACGAG 1 cut(s) 1088
BssT1I CCWWGG 2 cut(s) 452, 461
Bst2BI CACGAG 1 cut(s) 1088
Bst2UI CCWGG 6 cut(s) 484, 600, 812, 974, 1098, 1207
Bst4CI ACNGT 3 cut(s) 102, 327, 808
Bst6I CTCTTC 6 cut(s) 144, 387, 555, 711, 1015, 1136
BstAPI GCANNNNNTGC 1 cut(s) 72
BstBAI YACGTR 1 cut(s) 108
BstC8I GCNNGC 5 cut(s) 531, 632, 875, 947, 1050
BstDEI CTNAG 9 cut(s) 24, 330, 434, 606, 626, 635, 661, 748, 1117
BstF5I GGATG 4 cut(s) 304, 310, 316, 972
BstFNI CGCG 1 cut(s) 644
BstKTI GATC 3 cut(s) 382, 460, 568
BstMAI GTCTC 7 cut(s) 159, 329, 602, 716, 896, 977, 1174
BstMBI GATC 3 cut(s) 379, 457, 565
BstMWI GCNNNNNNNGC 6 cut(s) 72, 81, 126, 220, 320, 946
BstNI CCWGG 6 cut(s) 484, 600, 812, 974, 1098, 1207
BstSCI CCNGG 8 cut(s) 482, 598, 799, 810, 972, 977, 1096, 1205
BstSFI CTRYAG 2 cut(s) 387, 959
BstUI CGCG 1 cut(s) 644
BstV1I GCAGC 1 cut(s) 808
BstV2I GAAGAC 1 cut(s) 1104
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
Bsu36I CCTNAGG 1 cut(s) 1117
BsuRI GGCC 3 cut(s) 223, 977, 1052
BtgZI GCGATG 1 cut(s) 636
BtsCI GGATG 4 cut(s) 304, 310, 316, 972
BtsI GCAGTG 2 cut(s) 142, 614
BtsIMutI CAGTG 3 cut(s) 142, 323, 614
BveI ACCTGC 2 cut(s) 851, 966
Cac8I GCNNGC 5 cut(s) 531, 632, 875, 947, 1050
CaiI CAGNNNCTG 2 cut(s) 605, 696
Cfr13I GGNCC 5 cut(s) 221, 602, 804, 970, 1084
CsiI ACCWGGT 1 cut(s) 598
Csp6I GTAC 1 cut(s) 103
CviAII CATG 2 cut(s) 295, 1075
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 9 cut(s) 24, 330, 434, 606, 626, 635, 661, 748, 1117
DpnI GATC 3 cut(s) 381, 459, 567
DpnII GATC 3 cut(s) 379, 457, 565
Eam1104I CTCTTC 6 cut(s) 144, 387, 555, 711, 1015, 1136
EarI CTCTTC 6 cut(s) 144, 387, 555, 711, 1015, 1136
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 452, 461
Eco31I GGTCTC 2 cut(s) 896, 977
Eco32I GATATC 1 cut(s) 1240
Eco47I GGWCC 4 cut(s) 602, 804, 970, 1084
Eco57I CTGAAG 3 cut(s) 297, 481, 1064
Eco72I CACGTG 1 cut(s) 108
Eco81I CCTNAGG 1 cut(s) 1117
EcoO109I RGGNCCY 1 cut(s) 602
EcoRII CCWGG 6 cut(s) 482, 598, 810, 972, 1096, 1205
EcoRV GATATC 1 cut(s) 1240
EcoT14I CCWWGG 2 cut(s) 452, 461
ErhI CCWWGG 2 cut(s) 452, 461
Esp3I CGTCTC 1 cut(s) 716
FaeI CATG 2 cut(s) 298, 1078
FaqI GGGAC 2 cut(s) 28, 817
FatI CATG 2 cut(s) 294, 1074
FauI CCCGC 1 cut(s) 71
FblI GTMKAC 1 cut(s) 678
Fnu4HI GCNGC 1 cut(s) 797
FokI GGATG 4 cut(s) 311, 317, 323, 979
Fsp4HI GCNGC 1 cut(s) 797
FspBI CTAG 3 cut(s) 209, 887, 1243
GluI GCNGC 1 cut(s) 797
GsuI CTGGAG 2 cut(s) 378, 447
HaeIII GGCC 3 cut(s) 223, 977, 1052
HapII CCGG 4 cut(s) 800, 851, 978, 1187
Hin1II CATG 2 cut(s) 298, 1078
HincII GTYRAC 1 cut(s) 679
HindII GTYRAC 1 cut(s) 679
HindIII AAGCTT 2 cut(s) 632, 1104
HinfI GANTC 5 cut(s) 8, 176, 317, 592, 1222
HpaII CCGG 4 cut(s) 800, 851, 978, 1187
HphI GGTGA 4 cut(s) 10, 374, 546, 734
Hpy166II GTNNAC 3 cut(s) 105, 679, 1087
Hpy188I TCNGA 7 cut(s) 25, 261, 277, 331, 736, 860, 1000
Hpy188III TCNNGA 7 cut(s) 50, 357, 426, 569, 605, 1017, 1226
Hpy8I GTNNAC 3 cut(s) 105, 679, 1087
HpyAV CCTTC 4 cut(s) 69, 486, 500, 505
HpyCH4III ACNGT 3 cut(s) 102, 327, 808
HpyCH4IV ACGT 2 cut(s) 78, 107
HpyCH4V TGCA 7 cut(s) 120, 171, 323, 389, 877, 935, 961
HpyF10VI GCNNNNNNNGC 6 cut(s) 72, 81, 126, 220, 320, 946
HpyF3I CTNAG 9 cut(s) 24, 330, 434, 606, 626, 635, 661, 748, 1117
HpySE526I ACGT 2 cut(s) 78, 107
Hsp92II CATG 2 cut(s) 298, 1078
Kzo9I GATC 3 cut(s) 379, 457, 565
LguI GCTCTTC 2 cut(s) 711, 1015
LmnI GCTCC 4 cut(s) 205, 835, 1121, 1209
Lsp1109I GCAGC 1 cut(s) 808
LweI GCATC 5 cut(s) 75, 107, 158, 301, 727
MabI ACCWGGT 1 cut(s) 598
MaeI CTAG 3 cut(s) 209, 887, 1243
MaeII ACGT 2 cut(s) 78, 107
MaeIII GTNAC 2 cut(s) 552, 953
MalI GATC 3 cut(s) 381, 459, 567
MboI GATC 3 cut(s) 379, 457, 565
MfeI CAATTG 1 cut(s) 215
MflI RGATCY 1 cut(s) 457
MhlI GDGCHC 1 cut(s) 765
MluCI AATT 2 cut(s) 215, 1029
MlyI GAGTC 2 cut(s) 2, 185
MmeI TCCRAC 1 cut(s) 547
MroXI GAANNNNTTC 1 cut(s) 404
MseI TTAA 4 cut(s) 342, 447, 917, 1233
MslI CAYNNNNRTG 1 cut(s) 940
MspI CCGG 4 cut(s) 800, 851, 978, 1187
MspR9I CCNGG 8 cut(s) 484, 600, 801, 812, 974, 979, 1098, 1207
MunI CAATTG 1 cut(s) 215
MvaI CCWGG 6 cut(s) 484, 600, 812, 974, 1098, 1207
MvnI CGCG 1 cut(s) 644
MwoI GCNNNNNNNGC 6 cut(s) 72, 81, 126, 220, 320, 946
NciI CCSGG 2 cut(s) 801, 979
NdeII GATC 3 cut(s) 379, 457, 565
NlaIII CATG 2 cut(s) 298, 1078
NlaIV GGNNCC 7 cut(s) 222, 459, 511, 805, 928, 1085, 1123
NmuCI GTSAC 2 cut(s) 552, 953
PciSI GCTCTTC 2 cut(s) 711, 1015
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 404
PfeI GAWTC 3 cut(s) 317, 592, 1222
PflFI GACNNNGTC 1 cut(s) 888
PfoI TCCNGGA 1 cut(s) 810
PkrI GCNGC 1 cut(s) 798
PleI GAGTC 2 cut(s) 2, 184
PmaCI CACGTG 1 cut(s) 108
PmlI CACGTG 1 cut(s) 108
PpsI GAGTC 2 cut(s) 2, 184
Ppu21I YACGTR 1 cut(s) 108
PpuMI RGGWCCY 1 cut(s) 602
Psp5II RGGWCCY 1 cut(s) 602
Psp6I CCWGG 6 cut(s) 482, 598, 810, 972, 1096, 1205
PspCI CACGTG 1 cut(s) 108
PspGI CCWGG 6 cut(s) 482, 598, 810, 972, 1096, 1205
PspN4I GGNNCC 7 cut(s) 222, 459, 511, 805, 928, 1085, 1123
PspPI GGNCC 5 cut(s) 221, 602, 804, 970, 1084
PspPPI RGGWCCY 1 cut(s) 602
PstI CTGCAG 2 cut(s) 391, 963
PstNI CAGNNNCTG 2 cut(s) 605, 696
PsuI RGATCY 1 cut(s) 457
PsyI GACNNNGTC 1 cut(s) 888
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
RseI CAYNNNNRTG 1 cut(s) 940
SalI GTCGAC 1 cut(s) 677
SapI GCTCTTC 2 cut(s) 711, 1015
SaqAI TTAA 4 cut(s) 342, 447, 917, 1233
SatI GCNGC 1 cut(s) 797
Sau3AI GATC 3 cut(s) 379, 457, 565
Sau96I GGNCC 5 cut(s) 221, 602, 804, 970, 1084
SchI GAGTC 2 cut(s) 2, 185
ScrFI CCNGG 8 cut(s) 484, 600, 801, 812, 974, 979, 1098, 1207
SduI GDGCHC 1 cut(s) 765
SexAI ACCWGGT 1 cut(s) 598
SfaNI GCATC 5 cut(s) 75, 107, 158, 301, 727
SfcI CTRYAG 2 cut(s) 387, 959
SinI GGWCC 4 cut(s) 602, 804, 970, 1084
SmiMI CAYNNNNRTG 1 cut(s) 940
SmlI CTYRAG 1 cut(s) 1171
SmoI CTYRAG 1 cut(s) 1171
Sse9I AATT 2 cut(s) 215, 1029
SsiI CCGC 4 cut(s) 5, 64, 527, 642
SspI AATATT 1 cut(s) 163
SspMI CTAG 3 cut(s) 209, 887, 1243
StyD4I CCNGG 8 cut(s) 482, 598, 799, 810, 972, 977, 1096, 1205
StyI CCWWGG 2 cut(s) 452, 461
TaaI ACNGT 3 cut(s) 102, 327, 808
TaiI ACGT 2 cut(s) 81, 110
TaqI TCGA 4 cut(s) 51, 115, 166, 678
TaqII GACCGA 1 cut(s) 1001
TasI AATT 2 cut(s) 215, 1029
TatI WGTACW 1 cut(s) 102
TfiI GAWTC 3 cut(s) 317, 592, 1222
Tru1I TTAA 4 cut(s) 342, 447, 917, 1233
Tru9I TTAA 4 cut(s) 342, 447, 917, 1233
TscAI CASTG 3 cut(s) 149, 330, 621
TseFI GTSAC 2 cut(s) 552, 953
TseI GCWGC 1 cut(s) 796
Tsp45I GTSAC 2 cut(s) 552, 953
TspDTI ATGAA 4 cut(s) 297, 659, 1169, 1176
TspGWI ACGGA 1 cut(s) 757
TspRI CASTG 3 cut(s) 149, 330, 621
Tth111I GACNNNGTC 1 cut(s) 888
VpaK11BI GGWCC 4 cut(s) 602, 804, 970, 1084
XcmI CCANNNNNNNNNTGG 1 cut(s) 1094
XmiI GTMKAC 1 cut(s) 678
XmnI GAANNNNTTC 1 cut(s) 404
XspI CTAG 3 cut(s) 209, 887, 1243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.