Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005386

Physical Location & Seq

Genomic Coordinates Forward (+)

12438522 .. 12441216

Gene Structure 2695 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G127300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGCGGAGCCTATTATCACCTCTGAAAAACCCTCCACCACGCCTCTTTTGGACCCACCTTCCCGAATCGTCTGCCACGTTTGCCAGAAGCAATTTTCACAATACACATGCCCTCGCTGCAACTCTCGATACTGTTCTCTGCACTGCTACAAGTCTCATAATCTTCGATGCACCGAATCGTTCATGCGGGAAAATGTGGAGGGGGAGCTTGGGCAATTGGGACCGGACGACGAAACTAAACAGAAAATGCTGGACATACTGAAAAGATTTCATTCTGAAGAAGAAGCTGATGCCATGGATGATGATGAAGCTGGTTCTACTCTGTCTGAGGAGACCATTCAAAAAGTGCTTTCTGGAGGTCAAGTTAGTTTTGATGATCTATCTGCAGAAGAGAAGAAACTATTCCAAAAAGCTGTTGTATCCGGTGAACTAAGCAAGATGATTAAGCCTTGGGATCCATGGTGGTTGAAGCCTTCTGCCAGAGCAATAACATTCAGCAAGGAAGGAACACAACTTATCAAACCGCTTGCCAATGAGGAGGAATCAATGTCAACAGAAGATGATCTAGAAAGTAATCAAGCGAGTGAGATTCCACCTGGGCCTGACACCCCGCTGCCTCCAGTCAGCAAGCTTAGTTCTACAAAGCCATCACCAACCTTAGCTGTTCATCTGGTTGACATTATATATAGCTACTGTTTCACACTCCGTCTTTACAATGGAGATTGGCTATCAGACGCCACAGGATCAGCCATGGTACTACTGTCAGTGTCCTCTGTATTGGGCCAAGGTGGACAACCAGAGACCGTCCTGGAAGCTCTGTCTTATTGCCTGGAACAAACCTGCTCTCCTGCTTTCAGACAGATGGGTGGCTTGCAATTTGGACTTGGTCTTATAGATGATGTAATAACCCTATTAACGTTAGGAACCCCTGCTTTGTTGTGCTTGCTTTCTGATCTGCAGAGGATGGTTCAGGCTGGGGAGAGGGAACTGAAATCAGAGAAACCACGAAAGTCGAGAAGAGCTGAAATTAGGAGTAAGCTGAAGGTGGCCGAGAGGAAAATTTATTTCATCATGTGTTGGGTCCATGAGCAACCCGGGGAAGCTTGGTCTTCCTTGGCAGCCATTGTAAAGGCAGAGAAAGGTTCGGCTTTGAATTATGAAGCTGCTGCTTCAAGGCCCGGGAAAGTGGACAAGAAAGCAGAACCAAGAAGCAAGGTTTTGATTCAGGAGATCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SHQ1 zf-HIT

Protein Analysis

413

Amino Acids

45.66

Weight (kDa)

5.35

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63830
fragaria_vesca	FvH4_4g16080 FvH4_4g16080 FvH4_4g16080 FvH4_4g16080
malus_domestica	MD06G1114600.v1.1
prunus_persica	Prupe.5G127300_v2.0.a1
pyrus_communis	pycom06g10740
rosa_chinensis	RchiOBHm_Chr7g0184121 RchiOBHm_Chr7g0186571
rosa_laevigata	RLG00000004831
rosa_multiflora	Rmu_sc0000645.1_g000018 Rmu_sc0004712.1_g000003 Rmu_sc0025350.1_g000008
rosa_roxburghii	Rroxscaffold_3G00268020 Rroxscaffold_3G00269860
rosa_rugosa	Rorug06G0463200 Rorug06G0475200
rosa_samantha	Rh7AG065800 Rh7AG082600 Rh7BG064400 Rh7BG081700 Rh7CG065000 Rh7CG082000 Rh7DG064600 Rh7DG083000
rosa_wichuraiana	Rw7G005300 Rw7G006900 Rw7G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	848
AciI	CCGC	4 cut(s)	5, 187, 524, 611
AclI	AACGTT	1 cut(s)	917
AclWI	GGATC	3 cut(s)	449, 462, 751
AcoI	YGGCCR	1 cut(s)	1047
AcsI	RAATTY	1 cut(s)	1059
AcuI	CTGAAG	2 cut(s)	297, 1061
AcyI	GRCGYC	1 cut(s)	735
AfaI	GTAC	1 cut(s)	756
AgsI	TTSAA	4 cut(s)	341, 469, 1153, 1173
AjnI	CCWGG	3 cut(s)	595, 807, 828
Alw26I	GTCTC	3 cut(s)	159, 326, 794
AlwI	GGATC	3 cut(s)	449, 462, 751
Ama87I	CYCGRG	2 cut(s)	1094, 1178
AoxI	GGCC	4 cut(s)	599, 781, 1047, 1175
ApeKI	GCWGC	5 cut(s)	117, 613, 1118, 1163, 1166
ApoI	RAATTY	1 cut(s)	1059
Asp700I	GAANNNNTTC	1 cut(s)	401
AspS9I	GGNCC	6 cut(s)	52, 221, 599, 781, 1081, 1176
AsuC2I	CCSGG	4 cut(s)	1095, 1096, 1179, 1180
AsuHPI	GGTGA	3 cut(s)	10, 437, 642
AvaI	CYCGRG	2 cut(s)	1094, 1178
AvaII	GGWCC	3 cut(s)	52, 221, 1081
BaeI	ACNNNNGTAYC	2 cut(s)	746, 779
BamHI	GGATCC	1 cut(s)	454
BbsI	GAAGAC	1 cut(s)	1101
BbvI	GCAGC	5 cut(s)	104, 600, 1130, 1150, 1153
BccI	CCATC	3 cut(s)	655, 856, 958
BcgI	CGANNNNNNTGC	2 cut(s)	54, 88
BciT130I	CCWGG	3 cut(s)	597, 809, 830
BciVI	GTATCC	1 cut(s)	430
BcnI	CCSGG	4 cut(s)	1095, 1096, 1179, 1180
BcoDI	GTCTC	3 cut(s)	159, 326, 794
BfaI	CTAG	1 cut(s)	566
BfmI	CTRYAG	2 cut(s)	384, 956
BfuAI	ACCTGC	1 cut(s)	848
BfuI	GTATCC	1 cut(s)	430
BisI	GCNGC	5 cut(s)	118, 614, 1119, 1164, 1167
BlsI	GCNGC	5 cut(s)	119, 615, 1120, 1165, 1168
Bme1390I	CCNGG	7 cut(s)	597, 809, 830, 1095, 1096, 1179, 1180
Bme18I	GGWCC	3 cut(s)	52, 221, 1081
BmeT110I	CYCGRG	2 cut(s)	1094, 1178
BmgT120I	GGNCC	6 cut(s)	52, 221, 599, 781, 1081, 1176
BmiI	GGNNCC	6 cut(s)	9, 54, 222, 456, 925, 1082
BmrFI	CCNGG	7 cut(s)	597, 809, 830, 1095, 1096, 1179, 1180
BmsI	GCATC	2 cut(s)	158, 280
BpiI	GAAGAC	1 cut(s)	1101
BpmI	CTGGAG	2 cut(s)	375, 603
Bpu10I	CCTNAGC	1 cut(s)	658
BpuMI	CCSGG	4 cut(s)	1095, 1096, 1179, 1180
BsaHI	GRCGYC	1 cut(s)	735
BsaI	GGTCTC	2 cut(s)	326, 794
BsaWI	WCCGGW	2 cut(s)	223, 422
BsaXI	ACNNNNNCTCC	5 cut(s)	348, 378, 829, 859, 1220
Bse1I	ACTGG	1 cut(s)	620
BseBI	CCWGG	3 cut(s)	597, 809, 830
BseGI	GGATG	2 cut(s)	304, 969
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	620
BseRI	GAGGAG	2 cut(s)	344, 551
BseXI	GCAGC	5 cut(s)	104, 600, 1130, 1150, 1153
BseYI	CCCAGC	1 cut(s)	974
BsgI	GTGCAG	1 cut(s)	125
BshFI	GGCC	4 cut(s)	601, 783, 1049, 1177
BsiHKCI	CYCGRG	2 cut(s)	1094, 1178
BsiSI	CCGG	4 cut(s)	224, 423, 1095, 1179
BslFI	GGGAC	1 cut(s)	234
BsmAI	GTCTC	3 cut(s)	159, 326, 794
BsmFI	GGGAC	1 cut(s)	234
BsnI	GGCC	4 cut(s)	601, 783, 1049, 1177
Bso31I	GGTCTC	2 cut(s)	326, 794
BsoBI	CYCGRG	2 cut(s)	1094, 1178
Bsp143I	GATC	6 cut(s)	376, 454, 562, 743, 952, 1230
Bsp19I	CCATGG	3 cut(s)	294, 458, 750
BspACI	CCGC	4 cut(s)	5, 187, 524, 611
BspANI	GGCC	4 cut(s)	601, 783, 1049, 1177
BspCNI	CTCAG	1 cut(s)	319
BspLI	GGNNCC	6 cut(s)	9, 54, 222, 456, 925, 1082
BspMAI	CTGCAG	2 cut(s)	388, 960
BspMI	ACCTGC	1 cut(s)	848
BspPI	GGATC	3 cut(s)	449, 462, 751
BspQI	GCTCTTC	1 cut(s)	1012
BspTNI	GGTCTC	2 cut(s)	326, 794
BsrI	ACTGG	1 cut(s)	620
BssMI	GATC	6 cut(s)	376, 454, 562, 743, 952, 1230
BssNI	GRCGYC	1 cut(s)	735
BssT1I	CCWWGG	6 cut(s)	294, 449, 458, 750, 784, 1113
Bst2UI	CCWGG	3 cut(s)	597, 809, 830
Bst4CI	ACNGT	4 cut(s)	134, 695, 762, 805
Bst6I	CTCTTC	2 cut(s)	384, 1012
BstACI	GRCGYC	1 cut(s)	735
BstC8I	GCNNGC	4 cut(s)	528, 629, 872, 944
BstDEI	CTNAG	4 cut(s)	327, 431, 632, 658
BstDSI	CCRYGG	3 cut(s)	294, 458, 750
BstF5I	GGATG	2 cut(s)	304, 969
BstKTI	GATC	6 cut(s)	379, 457, 565, 746, 955, 1233
BstMAI	GTCTC	3 cut(s)	159, 326, 794
BstMBI	GATC	6 cut(s)	376, 454, 562, 743, 952, 1230
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 117
BstNI	CCWGG	3 cut(s)	597, 809, 830
BstNSI	RCATGY	1 cut(s)	111
BstSCI	CCNGG	7 cut(s)	595, 807, 828, 1093, 1094, 1177, 1178
BstSFI	CTRYAG	2 cut(s)	384, 956
BstV1I	GCAGC	5 cut(s)	104, 600, 1130, 1150, 1153
BstV2I	GAAGAC	1 cut(s)	1101
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BsuI	GTATCC	1 cut(s)	430
BsuRI	GGCC	4 cut(s)	601, 783, 1049, 1177
BtgI	CCRYGG	3 cut(s)	294, 458, 750
BtsCI	GGATG	2 cut(s)	304, 969
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	2 cut(s)	142, 771
BveI	ACCTGC	1 cut(s)	848
Cac8I	GCNNGC	4 cut(s)	528, 629, 872, 944
Cfr13I	GGNCC	6 cut(s)	52, 221, 599, 781, 1081, 1176
Cfr9I	CCCGGG	2 cut(s)	1094, 1178
CseI	GACGC	1 cut(s)	743
Csp6I	GTAC	1 cut(s)	755
CviAII	CATG	7 cut(s)	108, 184, 295, 459, 751, 1072, 1085
CviQI	GTAC	1 cut(s)	755
DdeI	CTNAG	4 cut(s)	327, 431, 632, 658
DpnI	GATC	6 cut(s)	378, 456, 564, 745, 954, 1232
DpnII	GATC	6 cut(s)	376, 454, 562, 743, 952, 1230
EaeI	YGGCCR	1 cut(s)	1047
Eam1104I	CTCTTC	2 cut(s)	384, 1012
EarI	CTCTTC	2 cut(s)	384, 1012
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	6 cut(s)	294, 449, 458, 750, 784, 1113
Eco31I	GGTCTC	2 cut(s)	326, 794
Eco47I	GGWCC	3 cut(s)	52, 221, 1081
Eco57I	CTGAAG	2 cut(s)	297, 1061
Eco88I	CYCGRG	2 cut(s)	1094, 1178
EcoRII	CCWGG	3 cut(s)	595, 807, 828
EcoT14I	CCWWGG	6 cut(s)	294, 449, 458, 750, 784, 1113
ErhI	CCWWGG	6 cut(s)	294, 449, 458, 750, 784, 1113
FaeI	CATG	7 cut(s)	111, 187, 298, 462, 754, 1075, 1088
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	7 cut(s)	107, 183, 294, 458, 750, 1071, 1084
FauI	CCCGC	2 cut(s)	180, 618
Fnu4HI	GCNGC	5 cut(s)	118, 614, 1119, 1164, 1167
FokI	GGATG	2 cut(s)	311, 976
Fsp4HI	GCNGC	5 cut(s)	118, 614, 1119, 1164, 1167
FspBI	CTAG	1 cut(s)	566
GluI	GCNGC	5 cut(s)	118, 614, 1119, 1164, 1167
GsaI	CCCAGC	1 cut(s)	978
GsuI	CTGGAG	2 cut(s)	375, 603
HaeIII	GGCC	4 cut(s)	601, 783, 1049, 1177
HapII	CCGG	4 cut(s)	224, 423, 1095, 1179
HgaI	GACGC	1 cut(s)	743
Hin1I	GRCGYC	1 cut(s)	735
Hin1II	CATG	7 cut(s)	111, 187, 298, 462, 754, 1075, 1088
HincII	GTYRAC	2 cut(s)	552, 676
HindII	GTYRAC	2 cut(s)	552, 676
HindIII	AAGCTT	2 cut(s)	629, 1101
HinfI	GANTC	5 cut(s)	66, 176, 542, 589, 1222
HpaII	CCGG	4 cut(s)	224, 423, 1095, 1179
HphI	GGTGA	3 cut(s)	10, 437, 642
Hpy166II	GTNNAC	5 cut(s)	428, 552, 676, 791, 1189
Hpy188I	TCNGA	7 cut(s)	25, 277, 328, 733, 857, 952, 997
Hpy188III	TCNNGA	6 cut(s)	63, 126, 354, 566, 1014, 1226
Hpy8I	GTNNAC	5 cut(s)	428, 552, 676, 791, 1189
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	4 cut(s)	69, 483, 497, 1036
HpyCH4III	ACNGT	4 cut(s)	134, 695, 762, 805
HpyCH4IV	ACGT	2 cut(s)	78, 917
HpyCH4V	TGCA	6 cut(s)	120, 142, 171, 386, 874, 958
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 117
HpyF3I	CTNAG	4 cut(s)	327, 431, 632, 658
HpySE526I	ACGT	2 cut(s)	78, 917
Hsp92I	GRCGYC	1 cut(s)	735
Hsp92II	CATG	7 cut(s)	111, 187, 298, 462, 754, 1075, 1088
Kzo9I	GATC	6 cut(s)	376, 454, 562, 743, 952, 1230
LguI	GCTCTTC	1 cut(s)	1012
LmnI	GCTCC	2 cut(s)	7, 205
Lsp1109I	GCAGC	5 cut(s)	104, 600, 1130, 1150, 1153
LweI	GCATC	2 cut(s)	158, 280
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	2 cut(s)	78, 917
MalI	GATC	6 cut(s)	378, 456, 564, 745, 954, 1232
MboI	GATC	6 cut(s)	376, 454, 562, 743, 952, 1230
MboII	GAAGA	8 cut(s)	155, 290, 293, 401, 406, 569, 1029, 1101
MfeI	CAATTG	1 cut(s)	215
MflI	RGATCY	1 cut(s)	454
MluCI	AATT	6 cut(s)	92, 215, 875, 1026, 1059, 1153
MroXI	GAANNNNTTC	1 cut(s)	401
MseI	TTAA	2 cut(s)	444, 914
MspA1I	CMGCKG	1 cut(s)	613
MspI	CCGG	4 cut(s)	224, 423, 1095, 1179
MspR9I	CCNGG	7 cut(s)	597, 809, 830, 1095, 1096, 1179, 1180
MunI	CAATTG	1 cut(s)	215
MvaI	CCWGG	3 cut(s)	597, 809, 830
MwoI	GCNNNNNNNGC	2 cut(s)	81, 117
NciI	CCSGG	4 cut(s)	1095, 1096, 1179, 1180
NcoI	CCATGG	3 cut(s)	294, 458, 750
NdeII	GATC	6 cut(s)	376, 454, 562, 743, 952, 1230
NlaIII	CATG	7 cut(s)	111, 187, 298, 462, 754, 1075, 1088
NlaIV	GGNNCC	6 cut(s)	9, 54, 222, 456, 925, 1082
NmeAIII	GCCGAG	1 cut(s)	1075
NspI	RCATGY	1 cut(s)	111
PciSI	GCTCTTC	1 cut(s)	1012
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	401
PfeI	GAWTC	5 cut(s)	66, 176, 542, 589, 1222
PflFI	GACNNNGTC	1 cut(s)	885
PfoI	TCCNGGA	1 cut(s)	807
PkrI	GCNGC	5 cut(s)	119, 615, 1120, 1165, 1168
Psp1406I	AACGTT	1 cut(s)	917
Psp6I	CCWGG	3 cut(s)	595, 807, 828
PspFI	CCCAGC	1 cut(s)	974
PspGI	CCWGG	3 cut(s)	595, 807, 828
PspN4I	GGNNCC	6 cut(s)	9, 54, 222, 456, 925, 1082
PspPI	GGNCC	6 cut(s)	52, 221, 599, 781, 1081, 1176
PstI	CTGCAG	2 cut(s)	388, 960
PsuI	RGATCY	1 cut(s)	454
PsyI	GACNNNGTC	1 cut(s)	885
RsaI	GTAC	1 cut(s)	756
RsaNI	GTAC	1 cut(s)	755
SapI	GCTCTTC	1 cut(s)	1012
SaqAI	TTAA	2 cut(s)	444, 914
SatI	GCNGC	5 cut(s)	118, 614, 1119, 1164, 1167
Sau3AI	GATC	6 cut(s)	376, 454, 562, 743, 952, 1230
Sau96I	GGNCC	6 cut(s)	52, 221, 599, 781, 1081, 1176
ScrFI	CCNGG	7 cut(s)	597, 809, 830, 1095, 1096, 1179, 1180
SfaNI	GCATC	2 cut(s)	158, 280
SfcI	CTRYAG	2 cut(s)	384, 956
SinI	GGWCC	3 cut(s)	52, 221, 1081
SmaI	CCCGGG	2 cut(s)	1096, 1180
Sse9I	AATT	6 cut(s)	92, 215, 875, 1026, 1059, 1153
SsiI	CCGC	4 cut(s)	5, 187, 524, 611
SspMI	CTAG	1 cut(s)	566
StyD4I	CCNGG	7 cut(s)	595, 807, 828, 1093, 1094, 1177, 1178
StyI	CCWWGG	6 cut(s)	294, 449, 458, 750, 784, 1113
TaaI	ACNGT	4 cut(s)	134, 695, 762, 805
TaiI	ACGT	2 cut(s)	81, 920
TaqI	TCGA	3 cut(s)	127, 166, 1013
TasI	AATT	6 cut(s)	92, 215, 875, 1026, 1059, 1153
TfiI	GAWTC	5 cut(s)	66, 176, 542, 589, 1222
Tru1I	TTAA	2 cut(s)	444, 914
Tru9I	TTAA	2 cut(s)	444, 914
TscAI	CASTG	2 cut(s)	149, 771
TseI	GCWGC	5 cut(s)	117, 613, 1118, 1163, 1166
TspDTI	ATGAA	6 cut(s)	172, 260, 321, 656, 1057, 1173
TspGWI	ACGGA	1 cut(s)	695
TspMI	CCCGGG	2 cut(s)	1094, 1178
TspRI	CASTG	2 cut(s)	149, 771
Tth111I	GACNNNGTC	1 cut(s)	885
VpaK11BI	GGWCC	3 cut(s)	52, 221, 1081
XapI	RAATTY	1 cut(s)	1059
XbaI	TCTAGA	1 cut(s)	565
XceI	RCATGY	1 cut(s)	111
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XmaI	CCCGGG	2 cut(s)	1094, 1178
XmnI	GAANNNNTTC	1 cut(s)	401
XspI	CTAG	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.