Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000645.1

Orthogroup ID

OG0005386

Physical Location & Seq

Genomic Coordinates Reverse (-)

64568 .. 66672

Gene Structure 2105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000645.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

atggcggactccataatcacctctgagaaaccctccacctcgtcccctctcgaccctccttcccgcatcgtctgccacgtttgccagaagcagttttcacagtacacgtgtcctcgatgcaactcacgctactgctctcttcactgctacaagtctcataacattcgatgcaccgagtcgtttatgcgaaataatgtggttggggagctagggcagttgggcccgaatgacgaaacgaagcagaagatgatggacatactgaaaaggtttcactctgaagatgaagctgatggcatggatgaggatgtggatgctgattctgcactgtctgaggagactattaaaaaagtgctgtctggaggtgaagttagttttgatgatctatctgcagaagagaagaaactattccaaagagctgttgcttctggagaactgagcaagatgattaagccttgggatccttggtggttgaagccttctgccaggacaatatccttcagcaaagaaggaacccaacttatccaaccgcttgccaaagaggacgaaccaatgtcaccagaagaggatcaagaaagcagtcaagcaagtgagattccaccaggtcctgagacaccactgcctcccctcagcaagcttagttccgcgaagccatcgccattcttagctgttcatctggtcgacattatatacagctactgctttgctcttcgtctctacaatggtgattggcaatcagatgccacaggctcagctatggtagtgctctccgtgtcatctgtattgggtcaaggagggcagccggagaccgtcctggaagctctatcttattgcttggagcagacctgctctccggctttcagacagatgggtggcttgcagtttggactaggtctcgtagatgatgtaataaccctattaacattaggaacccctgcattgctgtgcttgctttgtgatctgcagaggatggtccaggccggggagaccgagctgaaattagagaaaccacgaaaatcaagaagagctgaaattaggagtaagctgaagcaggccgaaaggaaaatctacttcctcatgtgttgggtccacgagcaacctggggaagcttggtcttccttaggagccatcgtaagggcagagaagagttcagctatgaactatgaagctgtctcaaggtctggcaaaccggacaacaaagcagaacccaggagcaaagttttgattcaagagattaaagatatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SHQ1 zf-HIT

Protein Analysis

414

Amino Acids

45.93

Weight (kDa)

5.26

Isoelectric Point (pI)

51.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63830
fragaria_vesca	FvH4_4g16080 FvH4_4g16080 FvH4_4g16080 FvH4_4g16080
malus_domestica	MD06G1114600.v1.1
prunus_persica	Prupe.5G127300_v2.0.a1
pyrus_communis	pycom06g10740
rosa_chinensis	RchiOBHm_Chr7g0184121 RchiOBHm_Chr7g0186571
rosa_laevigata	RLG00000004831
rosa_multiflora	Rmu_sc0000645.1_g000018 Rmu_sc0004712.1_g000003 Rmu_sc0025350.1_g000008
rosa_roxburghii	Rroxscaffold_3G00268020 Rroxscaffold_3G00269860
rosa_rugosa	Rorug06G0463200 Rorug06G0475200
rosa_samantha	Rh7AG065800 Rh7AG082600 Rh7BG064400 Rh7BG081700 Rh7CG065000 Rh7CG082000 Rh7DG064600 Rh7DG083000
rosa_wichuraiana	Rw7G005300 Rw7G006900 Rw7G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	851
AccI	GTMKAC	1 cut(s)	678
AccII	CGCG	1 cut(s)	644
AciI	CCGC	4 cut(s)	5, 64, 527, 642
AclWI	GGATC	3 cut(s)	452, 465, 573
AcuI	CTGAAG	3 cut(s)	297, 481, 1064
AcvI	CACGTG	1 cut(s)	108
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	979, 1131
AflIII	ACRYGT	2 cut(s)	105, 107
AgsI	TTSAA	2 cut(s)	472, 1226
AjnI	CCWGG	6 cut(s)	482, 598, 810, 972, 1096, 1205
Alw21I	GWGCWC	1 cut(s)	765
Alw26I	GTCTC	8 cut(s)	159, 329, 602, 716, 797, 896, 977, 1174
AlwI	GGATC	3 cut(s)	452, 465, 573
AlwNI	CAGNNNCTG	2 cut(s)	605, 696
AoxI	GGCC	3 cut(s)	220, 975, 1050
ApaI	GGGCCC	1 cut(s)	224
ApeKI	GCWGC	1 cut(s)	796
Asp700I	GAANNNNTTC	1 cut(s)	404
AspS9I	GGNCC	5 cut(s)	220, 221, 602, 970, 1084
AsuC2I	CCSGG	1 cut(s)	979
AsuHPI	GGTGA	4 cut(s)	10, 374, 546, 734
AvaII	GGWCC	3 cut(s)	602, 970, 1084
AxyI	CCTNAGG	1 cut(s)	1117
BaeGI	GKGCMC	1 cut(s)	224
BamHI	GGATCC	1 cut(s)	457
BanII	GRGCYC	1 cut(s)	224
BauI	CACGAG	1 cut(s)	1088
BbrPI	CACGTG	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	1104
Bbv12I	GWGCWC	1 cut(s)	765
BbvCI	CCTCAGC	1 cut(s)	626
BbvI	GCAGC	1 cut(s)	808
BccI	CCATC	6 cut(s)	244, 284, 658, 859, 961, 1133
BciT130I	CCWGG	6 cut(s)	484, 600, 812, 974, 1098, 1207
BcnI	CCSGG	1 cut(s)	979
BcoDI	GTCTC	8 cut(s)	159, 329, 602, 716, 797, 896, 977, 1174
BfaI	CTAG	3 cut(s)	209, 887, 1243
BfmI	CTRYAG	2 cut(s)	387, 959
BfuAI	ACCTGC	1 cut(s)	851
BisI	GCNGC	1 cut(s)	797
BlpI	GCTNAGC	1 cut(s)	748
BlsI	GCNGC	1 cut(s)	798
Bme1390I	CCNGG	7 cut(s)	484, 600, 812, 974, 979, 1098, 1207
Bme18I	GGWCC	3 cut(s)	602, 970, 1084
BmgT120I	GGNCC	5 cut(s)	220, 221, 602, 970, 1084
BmiI	GGNNCC	6 cut(s)	222, 459, 511, 928, 1085, 1123
BmrFI	CCNGG	7 cut(s)	484, 600, 812, 974, 979, 1098, 1207
BmsI	GCATC	5 cut(s)	75, 107, 158, 301, 727
BpiI	GAAGAC	1 cut(s)	1104
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpmI	CTGGAG	2 cut(s)	378, 447
Bpu10I	CCTNAGC	1 cut(s)	626
Bpu1102I	GCTNAGC	1 cut(s)	748
BpuEI	CTTGAG	1 cut(s)	1156
BpuMI	CCSGG	1 cut(s)	979
BsaAI	YACGTR	1 cut(s)	108
BsaI	GGTCTC	3 cut(s)	797, 896, 977
BsaJI	CCNNGG	5 cut(s)	452, 461, 978, 1097, 1205
BsaWI	WCCGGW	1 cut(s)	1186
BsaXI	ACNNNNNCTCC	6 cut(s)	351, 381, 832, 862, 1113, 1143
Bsc4I	CCNNNNNNNGG	2 cut(s)	979, 1131
Bse21I	CCTNAGG	1 cut(s)	1117
Bse3DI	GCAATG	1 cut(s)	935
BseBI	CCWGG	6 cut(s)	484, 600, 812, 974, 1098, 1207
BseDI	CCNNGG	5 cut(s)	452, 461, 978, 1097, 1205
BseGI	GGATG	4 cut(s)	304, 310, 316, 972
BseLI	CCNNNNNNNGG	2 cut(s)	979, 1131
BseMI	GCAATG	1 cut(s)	935
BseMII	CTCAG	6 cut(s)	15, 321, 425, 597, 640, 762
BseRI	GAGGAG	1 cut(s)	347
BseSI	GKGCMC	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	808
BsgI	GTGCAG	1 cut(s)	306
Bsh1236I	CGCG	1 cut(s)	644
BshFI	GGCC	3 cut(s)	222, 977, 1052
BsiHKAI	GWGCWC	1 cut(s)	765
BsiSI	CCGG	4 cut(s)	800, 851, 978, 1187
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	2 cut(s)	979, 1131
BsmAI	GTCTC	8 cut(s)	159, 329, 602, 716, 797, 896, 977, 1174
BsmBI	CGTCTC	1 cut(s)	716
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	3 cut(s)	222, 977, 1052
Bso31I	GGTCTC	3 cut(s)	797, 896, 977
Bsp120I	GGGCCC	1 cut(s)	220
Bsp1286I	GDGCHC	2 cut(s)	224, 765
Bsp143I	GATC	4 cut(s)	379, 457, 565, 955
Bsp1720I	GCTNAGC	1 cut(s)	748
BspACI	CCGC	4 cut(s)	5, 64, 527, 642
BspANI	GGCC	3 cut(s)	222, 977, 1052
BspCNI	CTCAG	6 cut(s)	16, 322, 426, 598, 639, 761
BspFNI	CGCG	1 cut(s)	644
BspLI	GGNNCC	6 cut(s)	222, 459, 511, 928, 1085, 1123
BspMAI	CTGCAG	2 cut(s)	391, 963
BspMI	ACCTGC	1 cut(s)	851
BspPI	GGATC	3 cut(s)	452, 465, 573
BspQI	GCTCTTC	2 cut(s)	711, 1015
BspTNI	GGTCTC	3 cut(s)	797, 896, 977
BsrDI	GCAATG	1 cut(s)	935
BssECI	CCNNGG	5 cut(s)	452, 461, 978, 1097, 1205
BssMI	GATC	4 cut(s)	379, 457, 565, 955
BssSI	CACGAG	1 cut(s)	1088
BssT1I	CCWWGG	2 cut(s)	452, 461
Bst2BI	CACGAG	1 cut(s)	1088
Bst2UI	CCWGG	6 cut(s)	484, 600, 812, 974, 1098, 1207
Bst4CI	ACNGT	3 cut(s)	102, 327, 808
Bst6I	CTCTTC	6 cut(s)	144, 387, 555, 711, 1015, 1136
BstAPI	GCANNNNNTGC	1 cut(s)	72
BstBAI	YACGTR	1 cut(s)	108
BstC8I	GCNNGC	5 cut(s)	531, 632, 875, 947, 1050
BstDEI	CTNAG	9 cut(s)	24, 330, 434, 606, 626, 635, 661, 748, 1117
BstF5I	GGATG	4 cut(s)	304, 310, 316, 972
BstFNI	CGCG	1 cut(s)	644
BstKTI	GATC	4 cut(s)	382, 460, 568, 958
BstMAI	GTCTC	8 cut(s)	159, 329, 602, 716, 797, 896, 977, 1174
BstMBI	GATC	4 cut(s)	379, 457, 565, 955
BstMWI	GCNNNNNNNGC	5 cut(s)	72, 81, 126, 320, 946
BstNI	CCWGG	6 cut(s)	484, 600, 812, 974, 1098, 1207
BstSCI	CCNGG	7 cut(s)	482, 598, 810, 972, 977, 1096, 1205
BstSFI	CTRYAG	2 cut(s)	387, 959
BstSLI	GKGCMC	1 cut(s)	224
BstUI	CGCG	1 cut(s)	644
BstV1I	GCAGC	1 cut(s)	808
BstV2I	GAAGAC	1 cut(s)	1104
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
Bsu36I	CCTNAGG	1 cut(s)	1117
BsuRI	GGCC	3 cut(s)	222, 977, 1052
BtgZI	GCGATG	1 cut(s)	636
BtsCI	GGATG	4 cut(s)	304, 310, 316, 972
BtsI	GCAGTG	2 cut(s)	142, 614
BtsIMutI	CAGTG	3 cut(s)	142, 323, 614
BveI	ACCTGC	1 cut(s)	851
Cac8I	GCNNGC	5 cut(s)	531, 632, 875, 947, 1050
CaiI	CAGNNNCTG	2 cut(s)	605, 696
Cfr13I	GGNCC	5 cut(s)	220, 221, 602, 970, 1084
CsiI	ACCWGGT	1 cut(s)	598
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	2 cut(s)	295, 1075
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	9 cut(s)	24, 330, 434, 606, 626, 635, 661, 748, 1117
DpnI	GATC	4 cut(s)	381, 459, 567, 957
DpnII	GATC	4 cut(s)	379, 457, 565, 955
Eam1104I	CTCTTC	6 cut(s)	144, 387, 555, 711, 1015, 1136
EarI	CTCTTC	6 cut(s)	144, 387, 555, 711, 1015, 1136
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	452, 461
Eco24I	GRGCYC	1 cut(s)	224
Eco31I	GGTCTC	3 cut(s)	797, 896, 977
Eco32I	GATATC	1 cut(s)	1240
Eco47I	GGWCC	3 cut(s)	602, 970, 1084
Eco57I	CTGAAG	3 cut(s)	297, 481, 1064
Eco72I	CACGTG	1 cut(s)	108
Eco81I	CCTNAGG	1 cut(s)	1117
EcoO109I	RGGNCCY	1 cut(s)	602
EcoRII	CCWGG	6 cut(s)	482, 598, 810, 972, 1096, 1205
EcoRV	GATATC	1 cut(s)	1240
EcoT14I	CCWWGG	2 cut(s)	452, 461
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	2 cut(s)	452, 461
Esp3I	CGTCTC	1 cut(s)	716
FaeI	CATG	2 cut(s)	298, 1078
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	2 cut(s)	294, 1074
FauI	CCCGC	1 cut(s)	71
FblI	GTMKAC	1 cut(s)	678
Fnu4HI	GCNGC	1 cut(s)	797
FokI	GGATG	4 cut(s)	311, 317, 323, 979
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	1 cut(s)	797
FspBI	CTAG	3 cut(s)	209, 887, 1243
GluI	GCNGC	1 cut(s)	797
GsuI	CTGGAG	2 cut(s)	378, 447
HaeIII	GGCC	3 cut(s)	222, 977, 1052
HapII	CCGG	4 cut(s)	800, 851, 978, 1187
Hin1II	CATG	2 cut(s)	298, 1078
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HindIII	AAGCTT	2 cut(s)	632, 1104
HinfI	GANTC	5 cut(s)	8, 176, 317, 592, 1222
HpaII	CCGG	4 cut(s)	800, 851, 978, 1187
HphI	GGTGA	4 cut(s)	10, 374, 546, 734
Hpy166II	GTNNAC	3 cut(s)	105, 679, 1087
Hpy188I	TCNGA	5 cut(s)	25, 277, 331, 736, 860
Hpy188III	TCNNGA	7 cut(s)	50, 357, 426, 569, 605, 1017, 1226
Hpy8I	GTNNAC	3 cut(s)	105, 679, 1087
HpyAV	CCTTC	4 cut(s)	69, 486, 500, 505
HpyCH4III	ACNGT	3 cut(s)	102, 327, 808
HpyCH4IV	ACGT	2 cut(s)	78, 107
HpyCH4V	TGCA	7 cut(s)	120, 171, 323, 389, 877, 935, 961
HpyF10VI	GCNNNNNNNGC	5 cut(s)	72, 81, 126, 320, 946
HpyF3I	CTNAG	9 cut(s)	24, 330, 434, 606, 626, 635, 661, 748, 1117
HpySE526I	ACGT	2 cut(s)	78, 107
Hsp92II	CATG	2 cut(s)	298, 1078
Kzo9I	GATC	4 cut(s)	379, 457, 565, 955
LguI	GCTCTTC	2 cut(s)	711, 1015
LmnI	GCTCC	4 cut(s)	205, 835, 1121, 1209
Lsp1109I	GCAGC	1 cut(s)	808
LweI	GCATC	5 cut(s)	75, 107, 158, 301, 727
MabI	ACCWGGT	1 cut(s)	598
MaeI	CTAG	3 cut(s)	209, 887, 1243
MaeII	ACGT	2 cut(s)	78, 107
MaeIII	GTNAC	1 cut(s)	552
MalI	GATC	4 cut(s)	381, 459, 567, 957
MboI	GATC	4 cut(s)	379, 457, 565, 955
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	2 cut(s)	224, 765
MluCI	AATT	2 cut(s)	995, 1029
MlyI	GAGTC	2 cut(s)	2, 185
MmeI	TCCRAC	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	404
MseI	TTAA	4 cut(s)	342, 447, 917, 1233
MslI	CAYNNNNRTG	1 cut(s)	940
MspI	CCGG	4 cut(s)	800, 851, 978, 1187
MspR9I	CCNGG	7 cut(s)	484, 600, 812, 974, 979, 1098, 1207
MvaI	CCWGG	6 cut(s)	484, 600, 812, 974, 1098, 1207
MvnI	CGCG	1 cut(s)	644
MwoI	GCNNNNNNNGC	5 cut(s)	72, 81, 126, 320, 946
NciI	CCSGG	1 cut(s)	979
NdeII	GATC	4 cut(s)	379, 457, 565, 955
NlaIII	CATG	2 cut(s)	298, 1078
NlaIV	GGNNCC	6 cut(s)	222, 459, 511, 928, 1085, 1123
NmuCI	GTSAC	1 cut(s)	552
PciSI	GCTCTTC	2 cut(s)	711, 1015
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	404
PfeI	GAWTC	3 cut(s)	317, 592, 1222
PflFI	GACNNNGTC	1 cut(s)	888
PfoI	TCCNGGA	1 cut(s)	810
PkrI	GCNGC	1 cut(s)	798
PleI	GAGTC	2 cut(s)	2, 184
PmaCI	CACGTG	1 cut(s)	108
PmlI	CACGTG	1 cut(s)	108
PpsI	GAGTC	2 cut(s)	2, 184
Ppu21I	YACGTR	1 cut(s)	108
PpuMI	RGGWCCY	1 cut(s)	602
Psp5II	RGGWCCY	1 cut(s)	602
Psp6I	CCWGG	6 cut(s)	482, 598, 810, 972, 1096, 1205
PspCI	CACGTG	1 cut(s)	108
PspGI	CCWGG	6 cut(s)	482, 598, 810, 972, 1096, 1205
PspN4I	GGNNCC	6 cut(s)	222, 459, 511, 928, 1085, 1123
PspOMI	GGGCCC	1 cut(s)	220
PspPI	GGNCC	5 cut(s)	220, 221, 602, 970, 1084
PspPPI	RGGWCCY	1 cut(s)	602
PstI	CTGCAG	2 cut(s)	391, 963
PstNI	CAGNNNCTG	2 cut(s)	605, 696
PsuI	RGATCY	1 cut(s)	457
PsyI	GACNNNGTC	1 cut(s)	888
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	940
SalI	GTCGAC	1 cut(s)	677
SapI	GCTCTTC	2 cut(s)	711, 1015
SaqAI	TTAA	4 cut(s)	342, 447, 917, 1233
SatI	GCNGC	1 cut(s)	797
Sau3AI	GATC	4 cut(s)	379, 457, 565, 955
Sau96I	GGNCC	5 cut(s)	220, 221, 602, 970, 1084
SchI	GAGTC	2 cut(s)	2, 185
ScrFI	CCNGG	7 cut(s)	484, 600, 812, 974, 979, 1098, 1207
SduI	GDGCHC	2 cut(s)	224, 765
SexAI	ACCWGGT	1 cut(s)	598
SfaNI	GCATC	5 cut(s)	75, 107, 158, 301, 727
SfcI	CTRYAG	2 cut(s)	387, 959
SinI	GGWCC	3 cut(s)	602, 970, 1084
SmiMI	CAYNNNNRTG	1 cut(s)	940
SmlI	CTYRAG	1 cut(s)	1171
SmoI	CTYRAG	1 cut(s)	1171
Sse9I	AATT	2 cut(s)	995, 1029
SsiI	CCGC	4 cut(s)	5, 64, 527, 642
SspMI	CTAG	3 cut(s)	209, 887, 1243
StyD4I	CCNGG	7 cut(s)	482, 598, 810, 972, 977, 1096, 1205
StyI	CCWWGG	2 cut(s)	452, 461
TaaI	ACNGT	3 cut(s)	102, 327, 808
TaiI	ACGT	2 cut(s)	81, 110
TaqI	TCGA	4 cut(s)	51, 115, 166, 678
TaqII	GACCGA	1 cut(s)	1001
TasI	AATT	2 cut(s)	995, 1029
TatI	WGTACW	1 cut(s)	102
TfiI	GAWTC	3 cut(s)	317, 592, 1222
Tru1I	TTAA	4 cut(s)	342, 447, 917, 1233
Tru9I	TTAA	4 cut(s)	342, 447, 917, 1233
TscAI	CASTG	3 cut(s)	149, 330, 621
TseFI	GTSAC	1 cut(s)	552
TseI	GCWGC	1 cut(s)	796
Tsp45I	GTSAC	1 cut(s)	552
TspDTI	ATGAA	4 cut(s)	297, 659, 1169, 1176
TspGWI	ACGGA	1 cut(s)	757
TspRI	CASTG	3 cut(s)	149, 330, 621
Tth111I	GACNNNGTC	1 cut(s)	888
VpaK11BI	GGWCC	3 cut(s)	602, 970, 1084
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1094
XmiI	GTMKAC	1 cut(s)	678
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	3 cut(s)	209, 887, 1243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.