Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025350.1

Orthogroup ID

OG0005386

Physical Location & Seq

Genomic Coordinates Forward (+)

19536 .. 20402

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025350.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atggatggggatgtggatgctgattctgcactgtctgaagagactatccaaaaagtgctggctggaggtgaagttagttttgattatctatctgcagaagaaaagaaactattccaaagagctgttgcttctggagaactgagcaagacgattaagccttggaatccttggtggttgaagccgtctgccaggacaatatcgttcagcaaagaaggaacccaactaatccaaccgcttgccaaagaggacgaaccaatgtcaccagaagatgatcaagaaagcagtcaagcaagtgagattccaccaggtcctgagacaccactgcctcccctcagcaagcttagttccgcaaagccatcaccattcttagctgttcatctggttgacagtatatacagctactgcttcgctctgagtgtctacaatagtgactggcaatcagatgccacaggctcagctatggtcgtgctctccgtgtcatcagtattgggtcaaggagggcagccggagactgtcctggaagctctatcttattgcttggagcagacctgctctccagctttcagacagatgggtggcttgcagtttggactaggtctcgtagacgatgtaataaccctattaacattaggaaccgcattgctgtgcttgctttgtgatctgcagaggatggtccaggcgggggagaccgagctgaaatcagagaaaccacgaaaatcaagaagagctgaaattaggagtacgctgaagcaggccgaaaggaaaatctacttcctcaagtgttgggtccgcgagcaaccttgggaagcttggtcttccttaggagtcatcgcaagggcagagaataagttcatagataaactatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SHQ1 zf-HIT

Protein Analysis

288

Amino Acids

31.71

Weight (kDa)

4.84

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63830
fragaria_vesca	FvH4_4g16080 FvH4_4g16080 FvH4_4g16080 FvH4_4g16080
malus_domestica	MD06G1114600.v1.1
prunus_persica	Prupe.5G127300_v2.0.a1
pyrus_communis	pycom06g10740
rosa_chinensis	RchiOBHm_Chr7g0184121 RchiOBHm_Chr7g0186571
rosa_laevigata	RLG00000004831
rosa_multiflora	Rmu_sc0000645.1_g000018 Rmu_sc0004712.1_g000003 Rmu_sc0025350.1_g000008
rosa_roxburghii	Rroxscaffold_3G00268020 Rroxscaffold_3G00269860
rosa_rugosa	Rorug06G0463200 Rorug06G0475200
rosa_samantha	Rh7AG065800 Rh7AG082600 Rh7BG064400 Rh7BG081700 Rh7CG065000 Rh7CG082000 Rh7DG064600 Rh7DG083000
rosa_wichuraiana	Rw7G005300 Rw7G006900 Rw7G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	557
AccI	GTMKAC	2 cut(s)	420, 603
AccII	CGCG	1 cut(s)	792
AciI	CCGC	5 cut(s)	233, 348, 636, 680, 790
AcuI	CTGAAG	2 cut(s)	57, 767
AfaI	GTAC	1 cut(s)	742
AfiI	CCNNNNNNNGG	1 cut(s)	682
AgsI	TTSAA	1 cut(s)	178
AjnI	CCWGG	4 cut(s)	188, 304, 516, 675
Alw21I	GWGCWC	1 cut(s)	471
Alw26I	GTCTC	5 cut(s)	35, 308, 503, 602, 680
AlwNI	CAGNNNCTG	2 cut(s)	311, 402
AoxI	GGCC	1 cut(s)	753
ApeKI	GCWGC	1 cut(s)	502
Asp700I	GAANNNNTTC	2 cut(s)	110, 848
AspS9I	GGNCC	3 cut(s)	308, 673, 787
AsuHPI	GGTGA	3 cut(s)	80, 252, 351
AvaII	GGWCC	3 cut(s)	308, 673, 787
AxyI	CCTNAGG	1 cut(s)	820
BbsI	GAAGAC	1 cut(s)	807
Bbv12I	GWGCWC	1 cut(s)	471
BbvCI	CCTCAGC	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	3 cut(s)	364, 565, 664
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	4 cut(s)	190, 306, 518, 677
BclI	TGATCA	1 cut(s)	271
BcoDI	GTCTC	5 cut(s)	35, 308, 503, 602, 680
BfaI	CTAG	1 cut(s)	593
BfmI	CTRYAG	2 cut(s)	93, 662
BfuAI	ACCTGC	1 cut(s)	557
BisI	GCNGC	1 cut(s)	503
BlpI	GCTNAGC	1 cut(s)	454
BlsI	GCNGC	1 cut(s)	504
Bme1390I	CCNGG	4 cut(s)	190, 306, 518, 677
Bme18I	GGWCC	3 cut(s)	308, 673, 787
BmgT120I	GGNCC	3 cut(s)	308, 673, 787
BmiI	GGNNCC	3 cut(s)	217, 634, 788
BmrFI	CCNGG	4 cut(s)	190, 306, 518, 677
BmsI	GCATC	2 cut(s)	7, 433
BpiI	GAAGAC	1 cut(s)	807
BpmI	CTGGAG	3 cut(s)	84, 153, 540
Bpu10I	CCTNAGC	1 cut(s)	332
Bpu1102I	GCTNAGC	1 cut(s)	454
BpuEI	CTTGAG	1 cut(s)	761
BsaI	GGTCTC	2 cut(s)	602, 680
BsaJI	CCNNGG	3 cut(s)	158, 167, 800
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 538, 568
Bsc4I	CCNNNNNNNGG	1 cut(s)	682
Bse1I	ACTGG	1 cut(s)	437
Bse21I	CCTNAGG	1 cut(s)	820
Bse3DI	GCAATG	1 cut(s)	638
BseBI	CCWGG	4 cut(s)	190, 306, 518, 677
BseDI	CCNNGG	3 cut(s)	158, 167, 800
BseGI	GGATG	4 cut(s)	10, 16, 22, 675
BseLI	CCNNNNNNNGG	1 cut(s)	682
BseMI	GCAATG	1 cut(s)	638
BseMII	CTCAG	5 cut(s)	131, 303, 346, 404, 468
BseNI	ACTGG	1 cut(s)	437
BseXI	GCAGC	1 cut(s)	514
BsgI	GTGCAG	1 cut(s)	12
Bsh1236I	CGCG	1 cut(s)	792
BshFI	GGCC	1 cut(s)	755
BsiHKAI	GWGCWC	1 cut(s)	471
BsiSI	CCGG	1 cut(s)	506
BslI	CCNNNNNNNGG	1 cut(s)	682
BsmAI	GTCTC	5 cut(s)	35, 308, 503, 602, 680
BsnI	GGCC	1 cut(s)	755
Bso31I	GGTCTC	2 cut(s)	602, 680
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp143I	GATC	2 cut(s)	271, 658
Bsp1720I	GCTNAGC	1 cut(s)	454
BspACI	CCGC	5 cut(s)	233, 348, 636, 680, 790
BspANI	GGCC	1 cut(s)	755
BspCNI	CTCAG	5 cut(s)	132, 304, 345, 405, 467
BspFNI	CGCG	1 cut(s)	792
BspLI	GGNNCC	3 cut(s)	217, 634, 788
BspMAI	CTGCAG	2 cut(s)	97, 666
BspMI	ACCTGC	1 cut(s)	557
BspQI	GCTCTTC	1 cut(s)	718
BspTNI	GGTCTC	2 cut(s)	602, 680
BsrDI	GCAATG	1 cut(s)	638
BsrI	ACTGG	1 cut(s)	437
BssECI	CCNNGG	3 cut(s)	158, 167, 800
BssMI	GATC	2 cut(s)	271, 658
BssT1I	CCWWGG	3 cut(s)	158, 167, 800
Bst2UI	CCWGG	4 cut(s)	190, 306, 518, 677
Bst4CI	ACNGT	3 cut(s)	33, 389, 514
Bst6I	CTCTTC	2 cut(s)	33, 718
BstC8I	GCNNGC	7 cut(s)	60, 237, 338, 581, 650, 753, 794
BstDEI	CTNAG	8 cut(s)	140, 312, 332, 341, 367, 413, 454, 820
BstF5I	GGATG	4 cut(s)	10, 16, 22, 675
BstFNI	CGCG	1 cut(s)	792
BstKTI	GATC	2 cut(s)	274, 661
BstMAI	GTCTC	5 cut(s)	35, 308, 503, 602, 680
BstMBI	GATC	2 cut(s)	271, 658
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 649
BstNI	CCWGG	4 cut(s)	190, 306, 518, 677
BstSCI	CCNGG	4 cut(s)	188, 304, 516, 675
BstSFI	CTRYAG	2 cut(s)	93, 662
BstUI	CGCG	1 cut(s)	792
BstV1I	GCAGC	1 cut(s)	514
BstV2I	GAAGAC	1 cut(s)	807
Bsu36I	CCTNAGG	1 cut(s)	820
BsuRI	GGCC	1 cut(s)	755
BtgZI	GCGATG	1 cut(s)	814
BtsCI	GGATG	4 cut(s)	10, 16, 22, 675
BtsI	GCAGTG	1 cut(s)	320
BtsIMutI	CAGTG	2 cut(s)	29, 320
BveI	ACCTGC	1 cut(s)	557
Cac8I	GCNNGC	7 cut(s)	60, 237, 338, 581, 650, 753, 794
CaiI	CAGNNNCTG	2 cut(s)	311, 402
Cfr13I	GGNCC	3 cut(s)	308, 673, 787
CsiI	ACCWGGT	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	741
CviQI	GTAC	1 cut(s)	741
DdeI	CTNAG	8 cut(s)	140, 312, 332, 341, 367, 413, 454, 820
DpnI	GATC	2 cut(s)	273, 660
DpnII	GATC	2 cut(s)	271, 658
Eam1104I	CTCTTC	2 cut(s)	33, 718
EarI	CTCTTC	2 cut(s)	33, 718
Eco130I	CCWWGG	3 cut(s)	158, 167, 800
Eco31I	GGTCTC	2 cut(s)	602, 680
Eco47I	GGWCC	3 cut(s)	308, 673, 787
Eco57I	CTGAAG	2 cut(s)	57, 767
Eco81I	CCTNAGG	1 cut(s)	820
EcoO109I	RGGNCCY	1 cut(s)	308
EcoRII	CCWGG	4 cut(s)	188, 304, 516, 675
EcoT14I	CCWWGG	3 cut(s)	158, 167, 800
ErhI	CCWWGG	3 cut(s)	158, 167, 800
FaiI	YATR	5 cut(s)	392, 394, 461, 854, 865
FauI	CCCGC	1 cut(s)	673
FbaI	TGATCA	1 cut(s)	271
FblI	GTMKAC	2 cut(s)	420, 603
Fnu4HI	GCNGC	1 cut(s)	503
FokI	GGATG	4 cut(s)	17, 23, 29, 682
Fsp4HI	GCNGC	1 cut(s)	503
FspBI	CTAG	1 cut(s)	593
GluI	GCNGC	1 cut(s)	503
GsuI	CTGGAG	3 cut(s)	84, 153, 540
HaeIII	GGCC	1 cut(s)	755
HapII	CCGG	1 cut(s)	506
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HindIII	AAGCTT	2 cut(s)	338, 807
HinfI	GANTC	4 cut(s)	23, 163, 298, 825
HpaII	CCGG	1 cut(s)	506
HphI	GGTGA	3 cut(s)	80, 252, 351
Hpy166II	GTNNAC	3 cut(s)	385, 421, 604
Hpy188I	TCNGA	5 cut(s)	37, 414, 442, 566, 703
Hpy188III	TCNNGA	4 cut(s)	132, 275, 311, 720
Hpy8I	GTNNAC	3 cut(s)	385, 421, 604
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	3 cut(s)	33, 389, 514
HpyCH4V	TGCA	4 cut(s)	29, 95, 583, 664
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 649
HpyF3I	CTNAG	8 cut(s)	140, 312, 332, 341, 367, 413, 454, 820
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	271, 658
LguI	GCTCTTC	1 cut(s)	718
LmnI	GCTCC	1 cut(s)	541
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	2 cut(s)	7, 433
MabI	ACCWGGT	1 cut(s)	304
MaeI	CTAG	1 cut(s)	593
MaeIII	GTNAC	2 cut(s)	258, 428
MalI	GATC	2 cut(s)	273, 660
MboI	GATC	2 cut(s)	271, 658
MboII	GAAGA	5 cut(s)	50, 110, 278, 735, 807
MhlI	GDGCHC	1 cut(s)	471
MluCI	AATT	1 cut(s)	732
MlyI	GAGTC	1 cut(s)	834
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	7 cut(s)	59, 238, 336, 341, 491, 660, 785
MroXI	GAANNNNTTC	2 cut(s)	110, 848
MseI	TTAA	2 cut(s)	153, 623
MslI	CAYNNNNRTG	1 cut(s)	643
MspI	CCGG	1 cut(s)	506
MspR9I	CCNGG	4 cut(s)	190, 306, 518, 677
MvaI	CCWGG	4 cut(s)	190, 306, 518, 677
MvnI	CGCG	1 cut(s)	792
MwoI	GCNNNNNNNGC	2 cut(s)	26, 649
NdeII	GATC	2 cut(s)	271, 658
NlaIV	GGNNCC	3 cut(s)	217, 634, 788
NmuCI	GTSAC	2 cut(s)	258, 428
PciSI	GCTCTTC	1 cut(s)	718
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PdmI	GAANNNNTTC	2 cut(s)	110, 848
PfeI	GAWTC	3 cut(s)	23, 163, 298
PflFI	GACNNNGTC	1 cut(s)	594
PfoI	TCCNGGA	1 cut(s)	516
PkrI	GCNGC	1 cut(s)	504
PleI	GAGTC	1 cut(s)	833
PpsI	GAGTC	1 cut(s)	833
PpuMI	RGGWCCY	1 cut(s)	308
Psp5II	RGGWCCY	1 cut(s)	308
Psp6I	CCWGG	4 cut(s)	188, 304, 516, 675
PspGI	CCWGG	4 cut(s)	188, 304, 516, 675
PspN4I	GGNNCC	3 cut(s)	217, 634, 788
PspPI	GGNCC	3 cut(s)	308, 673, 787
PspPPI	RGGWCCY	1 cut(s)	308
PstI	CTGCAG	2 cut(s)	97, 666
PstNI	CAGNNNCTG	2 cut(s)	311, 402
PsyI	GACNNNGTC	1 cut(s)	594
RsaI	GTAC	1 cut(s)	742
RsaNI	GTAC	1 cut(s)	741
RseI	CAYNNNNRTG	1 cut(s)	643
SapI	GCTCTTC	1 cut(s)	718
SaqAI	TTAA	2 cut(s)	153, 623
SatI	GCNGC	1 cut(s)	503
Sau3AI	GATC	2 cut(s)	271, 658
Sau96I	GGNCC	3 cut(s)	308, 673, 787
SchI	GAGTC	1 cut(s)	834
ScrFI	CCNGG	4 cut(s)	190, 306, 518, 677
SduI	GDGCHC	1 cut(s)	471
SexAI	ACCWGGT	1 cut(s)	304
SfaNI	GCATC	2 cut(s)	7, 433
SfcI	CTRYAG	2 cut(s)	93, 662
SinI	GGWCC	3 cut(s)	308, 673, 787
SmiMI	CAYNNNNRTG	1 cut(s)	643
SmlI	CTYRAG	1 cut(s)	776
SmoI	CTYRAG	1 cut(s)	776
Sse9I	AATT	1 cut(s)	732
SsiI	CCGC	5 cut(s)	233, 348, 636, 680, 790
SspMI	CTAG	1 cut(s)	593
StyD4I	CCNGG	4 cut(s)	188, 304, 516, 675
StyI	CCWWGG	3 cut(s)	158, 167, 800
TaaI	ACNGT	3 cut(s)	33, 389, 514
TaqII	GACCGA	1 cut(s)	704
TasI	AATT	1 cut(s)	732
TfiI	GAWTC	3 cut(s)	23, 163, 298
Tru1I	TTAA	2 cut(s)	153, 623
Tru9I	TTAA	2 cut(s)	153, 623
TscAI	CASTG	2 cut(s)	36, 327
TseFI	GTSAC	2 cut(s)	258, 428
TseI	GCWGC	1 cut(s)	502
Tsp45I	GTSAC	2 cut(s)	258, 428
TspDTI	ATGAA	2 cut(s)	365, 841
TspGWI	ACGGA	1 cut(s)	463
TspRI	CASTG	2 cut(s)	36, 327
Tth111I	GACNNNGTC	1 cut(s)	594
VpaK11BI	GGWCC	3 cut(s)	308, 673, 787
XmiI	GTMKAC	2 cut(s)	420, 603
XmnI	GAANNNNTTC	2 cut(s)	110, 848
XspI	CTAG	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.