Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005386

Physical Location & Seq

Genomic Coordinates Reverse (-)

4280073 .. 4280807

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG064400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCGAGATAATGTGGTTGGGAAGCTAGGGCAATTGGGGCCGAATGACGAAACGAAGCAGAAGATGATGGGCATACTGAAAAGGTTTCACTCTGAAGAAGAAGCTCATGGCATGGATGAGGATGTGGATGCTGATTCTGCACTGTCTGAAGAGACTATCCAAAAAGTGCTGGCTGGAGGTGAAGTTAGTTTTGATGATCTATCTGCAGAAGAAAAGAAACTATTCCAAAGAGCTGTTGCTTCTGGAGAACTGAGCAGCAAGATGATTAAGCCTTGGGATCCTTGGTGGTTGAAGCCGTCTGCCAGGACAATATCGTTCAGCAAAGAAGGAACCCAACTAATCCAACCACTTGCCAAAGAGGACGAACCAATGTCACCAGAAGATGATCAAGAAAGCAGTCAAGCAAGTGAGATTCCACCAGGTCCTGAGACACCACTGCCTCCCCTCAGCAAGCATAGTTCCGCGAAGCCATCACCATTCTTAGCTGTTCATCTGGTCGACATTATATACAGCTACTGCTTCGCTCTTCGTCTCTACAATGGTGATTGGCAATCAGATGCCACAGGCTCAGCTATGGTCGTGCTCTCCGTGTCATCGGTATTGGGTCAAGGAGGGCAGCCGGAGACTGTCCTGGAAGCTCTATCTTATTGCTTGGAGCAGACCTGCTCTCCAGCTTTCAGACAGATGGGTGGCTTGCAGTTTGGACTAGGTCTCGTAGACGATGTAATAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SHQ1 zf-HIT

Protein Analysis

244

Amino Acids

26.6

Weight (kDa)

4.57

Isoelectric Point (pI)

47.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63830
fragaria_vesca	FvH4_4g16080 FvH4_4g16080 FvH4_4g16080 FvH4_4g16080
malus_domestica	MD06G1114600.v1.1
prunus_persica	Prupe.5G127300_v2.0.a1
pyrus_communis	pycom06g10740
rosa_chinensis	RchiOBHm_Chr7g0184121 RchiOBHm_Chr7g0186571
rosa_laevigata	RLG00000004831
rosa_multiflora	Rmu_sc0000645.1_g000018 Rmu_sc0004712.1_g000003 Rmu_sc0025350.1_g000008
rosa_roxburghii	Rroxscaffold_3G00268020 Rroxscaffold_3G00269860
rosa_rugosa	Rorug06G0463200 Rorug06G0475200
rosa_samantha	Rh7AG065800 Rh7AG082600 Rh7BG064400 Rh7BG081700 Rh7CG065000 Rh7CG082000 Rh7DG064600 Rh7DG083000
rosa_wichuraiana	Rw7G005300 Rw7G006900 Rw7G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	671
AccI	GTMKAC	2 cut(s)	498, 717
AccII	CGCG	1 cut(s)	464
AciI	CCGC	1 cut(s)	462
AclWI	GGATC	2 cut(s)	272, 285
AcuI	CTGAAG	2 cut(s)	114, 168
AgsI	TTSAA	1 cut(s)	292
AjnI	CCWGG	3 cut(s)	302, 418, 630
AluBI	AGCT	8 cut(s)	25, 104, 233, 485, 513, 572, 638, 674
AluI	AGCT	8 cut(s)	25, 104, 233, 485, 513, 572, 638, 674
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	5 cut(s)	146, 422, 536, 617, 716
AlwI	GGATC	2 cut(s)	272, 285
AlwNI	CAGNNNCTG	2 cut(s)	425, 516
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	2 cut(s)	255, 616
Asp700I	GAANNNNTTC	1 cut(s)	221
AspS9I	GGNCC	2 cut(s)	38, 422
AsuHPI	GGTGA	4 cut(s)	191, 366, 465, 554
AvaII	GGWCC	1 cut(s)	422
BamHI	GGATCC	1 cut(s)	277
Bbv12I	GWGCWC	1 cut(s)	585
BbvCI	CCTCAGC	1 cut(s)	446
BbvI	GCAGC	2 cut(s)	267, 628
BccI	CCATC	3 cut(s)	61, 478, 679
BceAI	ACGGC	1 cut(s)	280
BciT130I	CCWGG	3 cut(s)	304, 420, 632
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	5 cut(s)	146, 422, 536, 617, 716
BfaI	CTAG	2 cut(s)	26, 707
BfmI	CTRYAG	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	671
BisI	GCNGC	2 cut(s)	256, 617
BlpI	GCTNAGC	1 cut(s)	568
BlsI	GCNGC	2 cut(s)	257, 618
Bme1390I	CCNGG	3 cut(s)	304, 420, 632
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	2 cut(s)	38, 422
BmiI	GGNNCC	3 cut(s)	39, 279, 331
BmrFI	CCNGG	3 cut(s)	304, 420, 632
BmsI	GCATC	2 cut(s)	118, 547
BpmI	CTGGAG	3 cut(s)	195, 264, 654
Bpu10I	CCTNAGC	1 cut(s)	446
Bpu1102I	GCTNAGC	1 cut(s)	568
BsaI	GGTCTC	1 cut(s)	716
BsaJI	CCNNGG	2 cut(s)	272, 281
BsaXI	ACNNNNNCTCC	4 cut(s)	168, 198, 652, 682
BseBI	CCWGG	3 cut(s)	304, 420, 632
BseDI	CCNNGG	2 cut(s)	272, 281
BseGI	GGATG	3 cut(s)	121, 127, 133
BseMII	CTCAG	4 cut(s)	242, 417, 460, 582
BseXI	GCAGC	2 cut(s)	267, 628
BsgI	GTGCAG	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	464
BshFI	GGCC	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	585
BsiSI	CCGG	1 cut(s)	620
BsmAI	GTCTC	5 cut(s)	146, 422, 536, 617, 716
BsmBI	CGTCTC	1 cut(s)	536
BsnI	GGCC	1 cut(s)	40
Bso31I	GGTCTC	1 cut(s)	716
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp143I	GATC	3 cut(s)	196, 277, 385
Bsp1720I	GCTNAGC	1 cut(s)	568
BspACI	CCGC	1 cut(s)	462
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	4 cut(s)	243, 418, 459, 581
BspFNI	CGCG	1 cut(s)	464
BspLI	GGNNCC	3 cut(s)	39, 279, 331
BspMAI	CTGCAG	1 cut(s)	208
BspMI	ACCTGC	1 cut(s)	671
BspPI	GGATC	2 cut(s)	272, 285
BspQI	GCTCTTC	1 cut(s)	531
BspTNI	GGTCTC	1 cut(s)	716
BssECI	CCNNGG	2 cut(s)	272, 281
BssMI	GATC	3 cut(s)	196, 277, 385
BssT1I	CCWWGG	2 cut(s)	272, 281
Bst2UI	CCWGG	3 cut(s)	304, 420, 632
Bst4CI	ACNGT	2 cut(s)	144, 628
Bst6I	CTCTTC	2 cut(s)	144, 531
BstC8I	GCNNGC	3 cut(s)	171, 452, 695
BstDEI	CTNAG	5 cut(s)	251, 426, 446, 481, 568
BstF5I	GGATG	3 cut(s)	121, 127, 133
BstFNI	CGCG	1 cut(s)	464
BstKTI	GATC	3 cut(s)	199, 280, 388
BstMAI	GTCTC	5 cut(s)	146, 422, 536, 617, 716
BstMBI	GATC	3 cut(s)	196, 277, 385
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 137
BstNI	CCWGG	3 cut(s)	304, 420, 632
BstSCI	CCNGG	3 cut(s)	302, 418, 630
BstSFI	CTRYAG	1 cut(s)	204
BstUI	CGCG	1 cut(s)	464
BstV1I	GCAGC	2 cut(s)	267, 628
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	40
BtsCI	GGATG	3 cut(s)	121, 127, 133
BtsI	GCAGTG	1 cut(s)	434
BtsIMutI	CAGTG	2 cut(s)	140, 434
BveI	ACCTGC	1 cut(s)	671
Cac8I	GCNNGC	3 cut(s)	171, 452, 695
CaiI	CAGNNNCTG	2 cut(s)	425, 516
Cfr13I	GGNCC	2 cut(s)	38, 422
CsiI	ACCWGGT	1 cut(s)	418
CviAII	CATG	2 cut(s)	107, 112
DdeI	CTNAG	5 cut(s)	251, 426, 446, 481, 568
DpnI	GATC	3 cut(s)	198, 279, 387
DpnII	GATC	3 cut(s)	196, 277, 385
Eam1104I	CTCTTC	2 cut(s)	144, 531
EarI	CTCTTC	2 cut(s)	144, 531
Eco130I	CCWWGG	2 cut(s)	272, 281
Eco31I	GGTCTC	1 cut(s)	716
Eco47I	GGWCC	1 cut(s)	422
Eco57I	CTGAAG	2 cut(s)	114, 168
EcoO109I	RGGNCCY	1 cut(s)	422
EcoRII	CCWGG	3 cut(s)	302, 418, 630
EcoT14I	CCWWGG	2 cut(s)	272, 281
ErhI	CCWWGG	2 cut(s)	272, 281
Esp3I	CGTCTC	1 cut(s)	536
FaeI	CATG	2 cut(s)	110, 115
FaiI	YATR	7 cut(s)	74, 108, 113, 456, 506, 508, 575
FatI	CATG	2 cut(s)	106, 111
FbaI	TGATCA	1 cut(s)	385
FblI	GTMKAC	2 cut(s)	498, 717
Fnu4HI	GCNGC	2 cut(s)	256, 617
FokI	GGATG	3 cut(s)	128, 134, 140
Fsp4HI	GCNGC	2 cut(s)	256, 617
FspBI	CTAG	2 cut(s)	26, 707
GluI	GCNGC	2 cut(s)	256, 617
GsuI	CTGGAG	3 cut(s)	195, 264, 654
HaeIII	GGCC	1 cut(s)	40
HapII	CCGG	1 cut(s)	620
Hin1II	CATG	2 cut(s)	110, 115
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HinfI	GANTC	2 cut(s)	134, 412
HpaII	CCGG	1 cut(s)	620
HphI	GGTGA	4 cut(s)	191, 366, 465, 554
Hpy166II	GTNNAC	2 cut(s)	499, 718
Hpy188I	TCNGA	4 cut(s)	94, 148, 556, 680
Hpy188III	TCNNGA	3 cut(s)	243, 389, 425
Hpy8I	GTNNAC	2 cut(s)	499, 718
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	2 cut(s)	144, 628
HpyCH4V	TGCA	3 cut(s)	140, 206, 697
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 137
HpyF3I	CTNAG	5 cut(s)	251, 426, 446, 481, 568
Hsp92II	CATG	2 cut(s)	110, 115
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	3 cut(s)	196, 277, 385
LguI	GCTCTTC	1 cut(s)	531
LmnI	GCTCC	1 cut(s)	655
Lsp1109I	GCAGC	2 cut(s)	267, 628
LweI	GCATC	2 cut(s)	118, 547
MabI	ACCWGGT	1 cut(s)	418
MaeI	CTAG	2 cut(s)	26, 707
MaeIII	GTNAC	1 cut(s)	372
MalI	GATC	3 cut(s)	198, 279, 387
MboI	GATC	3 cut(s)	196, 277, 385
MboII	GAAGA	7 cut(s)	73, 107, 110, 161, 221, 392, 518
MfeI	CAATTG	1 cut(s)	32
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	585
MluCI	AATT	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	367
MnlI	CCTC	6 cut(s)	112, 170, 352, 450, 455, 605
MroXI	GAANNNNTTC	1 cut(s)	221
MseI	TTAA	1 cut(s)	267
MspI	CCGG	1 cut(s)	620
MspR9I	CCNGG	3 cut(s)	304, 420, 632
MunI	CAATTG	1 cut(s)	32
MvaI	CCWGG	3 cut(s)	304, 420, 632
MvnI	CGCG	1 cut(s)	464
MwoI	GCNNNNNNNGC	2 cut(s)	37, 137
NdeII	GATC	3 cut(s)	196, 277, 385
NlaIII	CATG	2 cut(s)	110, 115
NlaIV	GGNNCC	3 cut(s)	39, 279, 331
NmuCI	GTSAC	1 cut(s)	372
PciSI	GCTCTTC	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	1 cut(s)	585
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	2 cut(s)	134, 412
PflFI	GACNNNGTC	1 cut(s)	708
PfoI	TCCNGGA	1 cut(s)	630
PkrI	GCNGC	2 cut(s)	257, 618
PpuMI	RGGWCCY	1 cut(s)	422
Psp5II	RGGWCCY	1 cut(s)	422
Psp6I	CCWGG	3 cut(s)	302, 418, 630
PspGI	CCWGG	3 cut(s)	302, 418, 630
PspN4I	GGNNCC	3 cut(s)	39, 279, 331
PspPI	GGNCC	2 cut(s)	38, 422
PspPPI	RGGWCCY	1 cut(s)	422
PstI	CTGCAG	1 cut(s)	208
PstNI	CAGNNNCTG	2 cut(s)	425, 516
PsuI	RGATCY	1 cut(s)	277
PsyI	GACNNNGTC	1 cut(s)	708
SalI	GTCGAC	1 cut(s)	497
SapI	GCTCTTC	1 cut(s)	531
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	2 cut(s)	256, 617
Sau3AI	GATC	3 cut(s)	196, 277, 385
Sau96I	GGNCC	2 cut(s)	38, 422
ScrFI	CCNGG	3 cut(s)	304, 420, 632
SduI	GDGCHC	1 cut(s)	585
SexAI	ACCWGGT	1 cut(s)	418
SfaNI	GCATC	2 cut(s)	118, 547
SfcI	CTRYAG	1 cut(s)	204
SinI	GGWCC	1 cut(s)	422
Sse9I	AATT	1 cut(s)	32
SsiI	CCGC	1 cut(s)	462
SspMI	CTAG	2 cut(s)	26, 707
StyD4I	CCNGG	3 cut(s)	302, 418, 630
StyI	CCWWGG	2 cut(s)	272, 281
TaaI	ACNGT	2 cut(s)	144, 628
TaqI	TCGA	1 cut(s)	498
TasI	AATT	1 cut(s)	32
TfiI	GAWTC	2 cut(s)	134, 412
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	2 cut(s)	147, 441
TseFI	GTSAC	1 cut(s)	372
TseI	GCWGC	2 cut(s)	255, 616
Tsp45I	GTSAC	1 cut(s)	372
TspDTI	ATGAA	1 cut(s)	479
TspGWI	ACGGA	1 cut(s)	577
TspRI	CASTG	2 cut(s)	147, 441
Tth111I	GACNNNGTC	1 cut(s)	708
VpaK11BI	GGWCC	1 cut(s)	422
XmiI	GTMKAC	2 cut(s)	498, 717
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	2 cut(s)	26, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.