Rh7AG082600

Zinc finger HIT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005386
Physical Location & Seq
Forward (+)
5927966 .. 5928271
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG082600.1

Sequence Viewer

Length: 306 bp
ATGGGTGGCTTGCAGTTTGGACAATGTCTCGTAGACGATGTAATAACCCTATTAACATTAGGAACCCCTGCATTGCTGTGCTTGCTTTGTGATCTGCAGAGGATGGTCCAGACCGGGGAGACCGAGCTGAAATCAGAGAAACCACGAAAATCAAGAAGAGCTGAAATTAGGAGTAAGCTGAAGCAGGCCGAAAGGAAAATGACCGAAAATCTACTTCATATGTTGGGTCCGCGAGCAACCTGGGGAAGCTTGGTCTTCCTTAGGAGCCATCGTAAAGGCAGAGAAAAGTTCAGCTATGAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SHQ1 zf-HIT

Protein Analysis

101

Amino Acids

11.56

Weight (kDa)

9.78

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 33
AccII CGCG 1 cut(s) 232
AciI CCGC 1 cut(s) 230
AcuI CTGAAG 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 115
AjnI CCWGG 1 cut(s) 239
AluBI AGCT 5 cut(s) 127, 161, 178, 249, 294
AluI AGCT 5 cut(s) 127, 161, 178, 249, 294
Alw26I GTCTC 2 cut(s) 32, 113
AoxI GGCC 1 cut(s) 186
AspS9I GGNCC 2 cut(s) 106, 227
AsuC2I CCSGG 1 cut(s) 115
AvaII GGWCC 2 cut(s) 106, 227
AxyI CCTNAGG 1 cut(s) 260
BbsI GAAGAC 1 cut(s) 247
BccI CCATC 2 cut(s) 97, 276
BciT130I CCWGG 1 cut(s) 241
BcnI CCSGG 1 cut(s) 115
BcoDI GTCTC 2 cut(s) 32, 113
BfmI CTRYAG 1 cut(s) 95
Bme1390I CCNGG 2 cut(s) 115, 241
Bme18I GGWCC 2 cut(s) 106, 227
BmgT120I GGNCC 2 cut(s) 106, 227
BmiI GGNNCC 3 cut(s) 64, 228, 266
BmrFI CCNGG 2 cut(s) 115, 241
BpiI GAAGAC 1 cut(s) 247
BpuMI CCSGG 1 cut(s) 115
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 114, 240
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse21I CCTNAGG 1 cut(s) 260
Bse3DI GCAATG 1 cut(s) 71
BseBI CCWGG 1 cut(s) 241
BseDI CCNNGG 2 cut(s) 114, 240
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMI GCAATG 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 232
BshFI GGCC 1 cut(s) 188
BsiSI CCGG 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 115
BsmAI GTCTC 2 cut(s) 32, 113
BsnI GGCC 1 cut(s) 188
Bso31I GGTCTC 1 cut(s) 113
Bsp143I GATC 1 cut(s) 91
BspACI CCGC 1 cut(s) 230
BspANI GGCC 1 cut(s) 188
BspFNI CGCG 1 cut(s) 232
BspLI GGNNCC 3 cut(s) 64, 228, 266
BspMAI CTGCAG 1 cut(s) 99
BspQI GCTCTTC 1 cut(s) 151
BspTNI GGTCTC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 71
BssECI CCNNGG 2 cut(s) 114, 240
BssMI GATC 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 241
Bst6I CTCTTC 1 cut(s) 151
BstC8I GCNNGC 4 cut(s) 11, 83, 186, 234
BstDEI CTNAG 1 cut(s) 260
BstF5I GGATG 1 cut(s) 108
BstFNI CGCG 1 cut(s) 232
BstKTI GATC 1 cut(s) 94
BstMAI GTCTC 2 cut(s) 32, 113
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstNI CCWGG 1 cut(s) 241
BstSCI CCNGG 2 cut(s) 113, 239
BstSFI CTRYAG 1 cut(s) 95
BstUI CGCG 1 cut(s) 232
BstV2I GAAGAC 1 cut(s) 247
Bsu36I CCTNAGG 1 cut(s) 260
BsuRI GGCC 1 cut(s) 188
BtsCI GGATG 1 cut(s) 108
Cac8I GCNNGC 4 cut(s) 11, 83, 186, 234
Cfr13I GGNCC 2 cut(s) 106, 227
CviJI RGCY 8 cut(s) 9, 127, 161, 178, 188, 249, 267, 294
CviKI_1 RGCY 8 cut(s) 9, 127, 161, 178, 188, 249, 267, 294
DdeI CTNAG 1 cut(s) 260
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Eco31I GGTCTC 1 cut(s) 113
Eco47I GGWCC 2 cut(s) 106, 227
Eco57I CTGAAG 1 cut(s) 200
Eco81I CCTNAGG 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 239
FaiI YATR 4 cut(s) 219, 221, 297, 304
FauNDI CATATG 1 cut(s) 219
FblI GTMKAC 1 cut(s) 33
FokI GGATG 1 cut(s) 115
HaeIII GGCC 1 cut(s) 188
HapII CCGG 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 247
HpaII CCGG 1 cut(s) 114
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 2 cut(s) 109, 153
Hpy8I GTNNAC 1 cut(s) 34
HpyCH4V TGCA 3 cut(s) 13, 71, 97
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpyF3I CTNAG 1 cut(s) 260
Kzo9I GATC 1 cut(s) 91
LguI GCTCTTC 1 cut(s) 151
LmnI GCTCC 1 cut(s) 264
LpnPI CCDG 6 cut(s) 81, 122, 127, 170, 226, 253
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 2 cut(s) 168, 247
MluCI AATT 1 cut(s) 165
MnlI CCTC 1 cut(s) 93
MseI TTAA 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 76
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 2 cut(s) 115, 241
MvaI CCWGG 1 cut(s) 241
MvnI CGCG 1 cut(s) 232
MwoI GCNNNNNNNGC 1 cut(s) 82
NciI CCSGG 1 cut(s) 115
NdeI CATATG 1 cut(s) 219
NdeII GATC 1 cut(s) 91
NlaIV GGNNCC 3 cut(s) 64, 228, 266
PciSI GCTCTTC 1 cut(s) 151
PflFI GACNNNGTC 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 239
PspGI CCWGG 1 cut(s) 239
PspN4I GGNNCC 3 cut(s) 64, 228, 266
PspPI GGNCC 2 cut(s) 106, 227
PstI CTGCAG 1 cut(s) 99
PsyI GACNNNGTC 1 cut(s) 24
RseI CAYNNNNRTG 1 cut(s) 76
SapI GCTCTTC 1 cut(s) 151
SaqAI TTAA 1 cut(s) 53
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 2 cut(s) 106, 227
ScrFI CCNGG 2 cut(s) 115, 241
SetI ASST 6 cut(s) 129, 163, 180, 242, 251, 296
SfcI CTRYAG 1 cut(s) 95
SinI GGWCC 2 cut(s) 106, 227
SmiMI CAYNNNNRTG 1 cut(s) 76
Sse9I AATT 1 cut(s) 165
SsiI CCGC 1 cut(s) 230
StyD4I CCNGG 2 cut(s) 113, 239
TaqII GACCGA 2 cut(s) 137, 218
TasI AATT 1 cut(s) 165
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 206
Tth111I GACNNNGTC 1 cut(s) 24
VpaK11BI GGWCC 2 cut(s) 106, 227
XmiI GTMKAC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.