FvH4_4g16080

Zinc finger HIT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0005386
Physical Location & Seq
Forward (+)
19979909 .. 19982329
2421 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g16080.t1

Sequence Viewer

Length: 1248 bp
ATGGCGGACTCGATTATCACCTCCGAGAAACCCTCCACCTCGTCGCCTCTGGACCCTCCTTCCCGCATCGTCTGCCACGTTTGCCAGAAGCAGTTTTCGCAGTACACGTGTCCTCGGTGCAACTCGCGCTACTGTTCTCTCCACTGCTACAAGTCTCATAATATTCGGTGTACGGAGTCGTTTATGAGAGATAATGTGGTTGGGGAGCTAGGGCAATTGCGGTCGAATGACGAAACGAAGCAGAAGATGCTGGACATACTGAAACGATTTCATTCTGAGGAACAAGTAGCTGATTGCATGGATGAGGATGTGGATGCTGATTCTGCACTGTCTGAAGAGACTATTCAAAAGGTGCTGGCTGGAGGTGAAGTTAGTTTAGATGATCTTCCTGCAGAAGAGAAAAAACTATTCCAAAGAGCTGTTGCATCTGGGGAACTGAGCAAGATGATCAAGCCTTGGGATCCATGGTGGTTGAAGCCTTCTGCCAGGACAATATCCTTCAGCAAAGAAGGAACTCAACTAATCCAACCACTTGCCAGAGAGGATGAACCAATGTCATCAGAAGATGATCTAGAGAGCAGCCTAGCAAGCGAAATTCCACCAGGTCCTGAGACACCACTGCCTCCCCTCAGCAAGCTTAGCTCCGCAAAGCCATCACCATTCTTAGCTGTTCATCTGGTCGACATTATATACAGCTACTGCTTTGCTCTTCGTCTCTACAATGGTGATTGGCAGTCAGATGCCACAGGCTCAGCTATGGTCGTGCTCTCTGTGTCATCTGTATTGGGTCAAGGAGGGCAACCGGAGACTGTCCTGGAAGCTCTATCTTACTGCCTGGAGCAGACCTGCTCTTCAGCTTTCAGACAGATGGGTGGCTTGCAGTTTGGACTAGGACTTGTAGACGATGTTATAAGCCTGCTAACACTAGGAACCCCTGCATTGTTGTGCTTGCTCTGTGATCTGCAGAGGATGGTCCAGGCTGGGGAGACCGAGCTGAAATCAGAGAAACCACGAAAATCAAGAAGAGTTGAAATTAGGAGCAAGCTGAAGCAAGCTGAGAGGAAAATTTACTTCCTCATGTGTTGGGTCCATGAGCAACCTGGTGAAGCTTGGTCTTCCTTAGGAGCCATCGTAAGAGCAGAGAAAAGCTCAGCTATGAACTATGAAGCGGTTTCACTGTCTCACAAACCAGACAACAAACCCGAACCCAGGAGCAAAGCTCTGATTGAAGAGATTAAAGATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SHQ1 zf-HIT

Protein Analysis

416

Amino Acids

46.11

Weight (kDa)

5.19

Isoelectric Point (pI)

52.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-HIT PF04438 22 - 51 2e-10 HIT zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 911
Acc36I ACCTGC 1 cut(s) 854
AccI GTMKAC 2 cut(s) 681, 900
AccII CGCG 1 cut(s) 127
AciI CCGC 5 cut(s) 5, 64, 220, 645, 1169
AclWI GGATC 2 cut(s) 455, 468
AcsI RAATTY 2 cut(s) 594, 1065
AcuI CTGAAG 4 cut(s) 354, 484, 837, 1067
AcvI CACGTG 1 cut(s) 108
AfaI GTAC 2 cut(s) 104, 172
AfiI CCNNNNNNNGG 2 cut(s) 982, 1209
AflIII ACRYGT 2 cut(s) 105, 107
AgsI TTSAA 4 cut(s) 347, 475, 1031, 1229
AjnI CCWGG 7 cut(s) 485, 601, 813, 834, 975, 1099, 1208
Alw21I GWGCWC 1 cut(s) 768
Alw26I GTCTC 7 cut(s) 159, 332, 605, 719, 800, 980, 1185
AlwI GGATC 2 cut(s) 455, 468
AlwNI CAGNNNCTG 2 cut(s) 608, 699
ApeKI GCWGC 1 cut(s) 579
ApoI RAATTY 2 cut(s) 594, 1065
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 4 cut(s) 52, 605, 973, 1087
AsuHPI GGTGA 5 cut(s) 10, 377, 648, 737, 1115
AvaII GGWCC 4 cut(s) 52, 605, 973, 1087
AxyI CCTNAGG 1 cut(s) 1120
BamHI GGATCC 1 cut(s) 460
BbrPI CACGTG 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 1107
Bbv12I GWGCWC 1 cut(s) 768
BbvCI CCTCAGC 1 cut(s) 629
BbvI GCAGC 1 cut(s) 591
BccI CCATC 4 cut(s) 661, 862, 964, 1136
BciT130I CCWGG 7 cut(s) 487, 603, 815, 836, 977, 1101, 1210
BclI TGATCA 1 cut(s) 447
BcoDI GTCTC 7 cut(s) 159, 332, 605, 719, 800, 980, 1185
BfaI CTAG 6 cut(s) 209, 572, 584, 890, 926, 1246
BfmI CTRYAG 2 cut(s) 390, 962
BfuAI ACCTGC 1 cut(s) 854
BisI GCNGC 1 cut(s) 580
BlpI GCTNAGC 3 cut(s) 638, 751, 1150
BlsI GCNGC 1 cut(s) 581
Bme1390I CCNGG 7 cut(s) 487, 603, 815, 836, 977, 1101, 1210
Bme18I GGWCC 4 cut(s) 52, 605, 973, 1087
BmgT120I GGNCC 4 cut(s) 52, 605, 973, 1087
BmiI GGNNCC 5 cut(s) 54, 462, 931, 1088, 1126
BmrFI CCNGG 7 cut(s) 487, 603, 815, 836, 977, 1101, 1210
BmsI GCATC 5 cut(s) 75, 237, 304, 434, 730
BpiI GAAGAC 1 cut(s) 1107
BplI GAGNNNNNCTC 6 cut(s) 17, 49, 1133, 1165, 1204, 1236
BpmI CTGGAG 2 cut(s) 381, 857
Bpu10I CCTNAGC 1 cut(s) 629
Bpu1102I GCTNAGC 3 cut(s) 638, 751, 1150
BsaAI YACGTR 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 980
BsaJI CCNNGG 4 cut(s) 113, 455, 464, 1208
BsaWI WCCGGW 1 cut(s) 802
BsaXI ACNNNNNCTCC 4 cut(s) 354, 384, 1116, 1146
Bsc4I CCNNNNNNNGG 2 cut(s) 982, 1209
Bse21I CCTNAGG 1 cut(s) 1120
BseBI CCWGG 7 cut(s) 487, 603, 815, 836, 977, 1101, 1210
BseDI CCNNGG 4 cut(s) 113, 455, 464, 1208
BseGI GGATG 5 cut(s) 307, 313, 319, 550, 975
BseLI CCNNNNNNNGG 2 cut(s) 982, 1209
BseMII CTCAG 7 cut(s) 267, 428, 600, 643, 765, 1047, 1164
BseXI GCAGC 1 cut(s) 591
BseYI CCCAGC 1 cut(s) 980
BsgI GTGCAG 1 cut(s) 309
Bsh1236I CGCG 1 cut(s) 127
Bsh1285I CGRYCG 1 cut(s) 224
BsiEI CGRYCG 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 768
BsiSI CCGG 1 cut(s) 803
BslI CCNNNNNNNGG 2 cut(s) 982, 1209
BsmAI GTCTC 7 cut(s) 159, 332, 605, 719, 800, 980, 1185
BsmBI CGTCTC 1 cut(s) 719
Bso31I GGTCTC 1 cut(s) 980
Bsp1286I GDGCHC 1 cut(s) 768
Bsp143I GATC 5 cut(s) 382, 447, 460, 568, 958
Bsp1720I GCTNAGC 3 cut(s) 638, 751, 1150
Bsp19I CCATGG 1 cut(s) 464
BspACI CCGC 5 cut(s) 5, 64, 220, 645, 1169
BspCNI CTCAG 7 cut(s) 268, 429, 601, 642, 764, 1048, 1163
BspFNI CGCG 1 cut(s) 127
BspLI GGNNCC 5 cut(s) 54, 462, 931, 1088, 1126
BspMAI CTGCAG 2 cut(s) 394, 966
BspMI ACCTGC 1 cut(s) 854
BspPI GGATC 2 cut(s) 455, 468
BspQI GCTCTTC 2 cut(s) 714, 856
BspTNI GGTCTC 1 cut(s) 980
BssECI CCNNGG 4 cut(s) 113, 455, 464, 1208
BssMI GATC 5 cut(s) 382, 447, 460, 568, 958
BssT1I CCWWGG 2 cut(s) 455, 464
Bst2UI CCWGG 7 cut(s) 487, 603, 815, 836, 977, 1101, 1210
Bst4CI ACNGT 4 cut(s) 134, 330, 811, 1179
Bst6I CTCTTC 6 cut(s) 330, 390, 714, 856, 1018, 1224
BstAPI GCANNNNNTGC 2 cut(s) 72, 247
BstBAI YACGTR 1 cut(s) 108
BstC8I GCNNGC 8 cut(s) 357, 589, 635, 878, 917, 950, 1043, 1053
BstDSI CCRYGG 1 cut(s) 464
BstF5I GGATG 5 cut(s) 307, 313, 319, 550, 975
BstFNI CGCG 1 cut(s) 127
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 5 cut(s) 385, 450, 463, 571, 961
BstMAI GTCTC 7 cut(s) 159, 332, 605, 719, 800, 980, 1185
BstMBI GATC 5 cut(s) 382, 447, 460, 568, 958
BstMCI CGRYCG 1 cut(s) 224
BstMWI GCNNNNNNNGC 8 cut(s) 72, 81, 97, 126, 247, 323, 588, 639
BstNI CCWGG 7 cut(s) 487, 603, 815, 836, 977, 1101, 1210
BstSCI CCNGG 7 cut(s) 485, 601, 813, 834, 975, 1099, 1208
BstSFI CTRYAG 2 cut(s) 390, 962
BstUI CGCG 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 591
BstV2I GAAGAC 1 cut(s) 1107
BstX2I RGATCY 1 cut(s) 460
BstYI RGATCY 1 cut(s) 460
Bsu36I CCTNAGG 1 cut(s) 1120
BtgI CCRYGG 1 cut(s) 464
BtsCI GGATG 5 cut(s) 307, 313, 319, 550, 975
BtsI GCAGTG 2 cut(s) 142, 617
BtsIMutI CAGTG 4 cut(s) 142, 326, 617, 1175
BveI ACCTGC 1 cut(s) 854
Cac8I GCNNGC 8 cut(s) 357, 589, 635, 878, 917, 950, 1043, 1053
CaiI CAGNNNCTG 2 cut(s) 608, 699
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 4 cut(s) 52, 605, 973, 1087
CsiI ACCWGGT 2 cut(s) 601, 1099
Csp6I GTAC 2 cut(s) 103, 171
CviAII CATG 4 cut(s) 298, 465, 1078, 1091
CviQI GTAC 2 cut(s) 103, 171
DpnI GATC 5 cut(s) 384, 449, 462, 570, 960
DpnII GATC 5 cut(s) 382, 447, 460, 568, 958
Eam1104I CTCTTC 6 cut(s) 330, 390, 714, 856, 1018, 1224
EarI CTCTTC 6 cut(s) 330, 390, 714, 856, 1018, 1224
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 455, 464
Eco31I GGTCTC 1 cut(s) 980
Eco32I GATATC 1 cut(s) 1243
Eco47I GGWCC 4 cut(s) 52, 605, 973, 1087
Eco57I CTGAAG 4 cut(s) 354, 484, 837, 1067
Eco72I CACGTG 1 cut(s) 108
Eco81I CCTNAGG 1 cut(s) 1120
EcoO109I RGGNCCY 1 cut(s) 605
EcoRII CCWGG 7 cut(s) 485, 601, 813, 834, 975, 1099, 1208
EcoRV GATATC 1 cut(s) 1243
EcoT14I CCWWGG 2 cut(s) 455, 464
ErhI CCWWGG 2 cut(s) 455, 464
Esp3I CGTCTC 1 cut(s) 719
FaeI CATG 4 cut(s) 301, 468, 1081, 1094
FatI CATG 4 cut(s) 297, 464, 1077, 1090
FauI CCCGC 1 cut(s) 71
FbaI TGATCA 1 cut(s) 447
FblI GTMKAC 2 cut(s) 681, 900
Fnu4HI GCNGC 1 cut(s) 580
FokI GGATG 5 cut(s) 314, 320, 326, 557, 982
Fsp4HI GCNGC 1 cut(s) 580
FspBI CTAG 6 cut(s) 209, 572, 584, 890, 926, 1246
GlaI GCGC 1 cut(s) 128
GluI GCNGC 1 cut(s) 580
GsaI CCCAGC 1 cut(s) 984
GsuI CTGGAG 2 cut(s) 381, 857
HapII CCGG 1 cut(s) 803
HhaI GCGC 1 cut(s) 129
Hin1II CATG 4 cut(s) 301, 468, 1081, 1094
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HincII GTYRAC 1 cut(s) 682
HindII GTYRAC 1 cut(s) 682
HindIII AAGCTT 2 cut(s) 635, 1107
HinfI GANTC 3 cut(s) 8, 176, 320
HpaII CCGG 1 cut(s) 803
HphI GGTGA 5 cut(s) 10, 377, 648, 737, 1115
Hpy166II GTNNAC 4 cut(s) 105, 171, 682, 901
Hpy188I TCNGA 8 cut(s) 25, 277, 334, 562, 739, 863, 1003, 1224
Hpy188III TCNNGA 4 cut(s) 50, 572, 608, 1020
Hpy8I GTNNAC 4 cut(s) 105, 171, 682, 901
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 4 cut(s) 69, 489, 503, 508
HpyCH4III ACNGT 4 cut(s) 134, 330, 811, 1179
HpyCH4IV ACGT 2 cut(s) 78, 107
HpyCH4V TGCA 8 cut(s) 120, 297, 326, 392, 425, 880, 938, 964
HpyF10VI GCNNNNNNNGC 8 cut(s) 72, 81, 97, 126, 247, 323, 588, 639
HpySE526I ACGT 2 cut(s) 78, 107
Hsp92II CATG 4 cut(s) 301, 468, 1081, 1094
HspAI GCGC 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 447
Kzo9I GATC 5 cut(s) 382, 447, 460, 568, 958
LguI GCTCTTC 2 cut(s) 714, 856
LmnI GCTCC 6 cut(s) 205, 647, 838, 1038, 1124, 1212
Lsp1109I GCAGC 1 cut(s) 591
LweI GCATC 5 cut(s) 75, 237, 304, 434, 730
MabI ACCWGGT 2 cut(s) 601, 1099
MaeI CTAG 6 cut(s) 209, 572, 584, 890, 926, 1246
MaeII ACGT 2 cut(s) 78, 107
MalI GATC 5 cut(s) 384, 449, 462, 570, 960
MboI GATC 5 cut(s) 382, 447, 460, 568, 958
MfeI CAATTG 1 cut(s) 215
MflI RGATCY 1 cut(s) 460
MhlI GDGCHC 1 cut(s) 768
MluCI AATT 4 cut(s) 215, 594, 1032, 1065
MlyI GAGTC 2 cut(s) 2, 185
MmeI TCCRAC 1 cut(s) 550
MseI TTAA 1 cut(s) 1236
MslI CAYNNNNRTG 1 cut(s) 943
MspI CCGG 1 cut(s) 803
MspR9I CCNGG 7 cut(s) 487, 603, 815, 836, 977, 1101, 1210
MunI CAATTG 1 cut(s) 215
MvaI CCWGG 7 cut(s) 487, 603, 815, 836, 977, 1101, 1210
MvnI CGCG 1 cut(s) 127
MwoI GCNNNNNNNGC 8 cut(s) 72, 81, 97, 126, 247, 323, 588, 639
NcoI CCATGG 1 cut(s) 464
NdeII GATC 5 cut(s) 382, 447, 460, 568, 958
NlaIII CATG 4 cut(s) 301, 468, 1081, 1094
NlaIV GGNNCC 5 cut(s) 54, 462, 931, 1088, 1126
PciSI GCTCTTC 2 cut(s) 714, 856
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 104
PfeI GAWTC 1 cut(s) 320
PfoI TCCNGGA 1 cut(s) 813
PkrI GCNGC 1 cut(s) 581
PleI GAGTC 2 cut(s) 2, 184
PmaCI CACGTG 1 cut(s) 108
PmlI CACGTG 1 cut(s) 108
PpsI GAGTC 2 cut(s) 2, 184
Ppu21I YACGTR 1 cut(s) 108
PpuMI RGGWCCY 1 cut(s) 605
PsiI TTATAA 1 cut(s) 911
Psp5II RGGWCCY 1 cut(s) 605
Psp6I CCWGG 7 cut(s) 485, 601, 813, 834, 975, 1099, 1208
PspCI CACGTG 1 cut(s) 108
PspFI CCCAGC 1 cut(s) 980
PspGI CCWGG 7 cut(s) 485, 601, 813, 834, 975, 1099, 1208
PspN4I GGNNCC 5 cut(s) 54, 462, 931, 1088, 1126
PspPI GGNCC 4 cut(s) 52, 605, 973, 1087
PspPPI RGGWCCY 1 cut(s) 605
PstI CTGCAG 2 cut(s) 394, 966
PstNI CAGNNNCTG 2 cut(s) 608, 699
PsuI RGATCY 1 cut(s) 460
RsaI GTAC 2 cut(s) 104, 172
RsaNI GTAC 2 cut(s) 103, 171
RseI CAYNNNNRTG 1 cut(s) 943
SalI GTCGAC 1 cut(s) 680
SapI GCTCTTC 2 cut(s) 714, 856
SaqAI TTAA 1 cut(s) 1236
SatI GCNGC 1 cut(s) 580
Sau3AI GATC 5 cut(s) 382, 447, 460, 568, 958
Sau96I GGNCC 4 cut(s) 52, 605, 973, 1087
SchI GAGTC 2 cut(s) 2, 185
ScrFI CCNGG 7 cut(s) 487, 603, 815, 836, 977, 1101, 1210
SduI GDGCHC 1 cut(s) 768
SexAI ACCWGGT 2 cut(s) 601, 1099
SfaNI GCATC 5 cut(s) 75, 237, 304, 434, 730
SfcI CTRYAG 2 cut(s) 390, 962
SinI GGWCC 4 cut(s) 52, 605, 973, 1087
SmiMI CAYNNNNRTG 1 cut(s) 943
Sse9I AATT 4 cut(s) 215, 594, 1032, 1065
SsiI CCGC 5 cut(s) 5, 64, 220, 645, 1169
SspI AATATT 1 cut(s) 163
SspMI CTAG 6 cut(s) 209, 572, 584, 890, 926, 1246
StyD4I CCNGG 7 cut(s) 485, 601, 813, 834, 975, 1099, 1208
StyI CCWWGG 2 cut(s) 455, 464
TaaI ACNGT 4 cut(s) 134, 330, 811, 1179
TaiI ACGT 2 cut(s) 81, 110
TaqI TCGA 3 cut(s) 11, 224, 681
TaqII GACCGA 1 cut(s) 1004
TasI AATT 4 cut(s) 215, 594, 1032, 1065
TatI WGTACW 1 cut(s) 102
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 1 cut(s) 1236
Tru9I TTAA 1 cut(s) 1236
TscAI CASTG 4 cut(s) 149, 333, 624, 1182
TseI GCWGC 1 cut(s) 579
TspDTI ATGAA 5 cut(s) 260, 561, 662, 1172, 1179
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 4 cut(s) 149, 333, 624, 1182
VpaK11BI GGWCC 4 cut(s) 52, 605, 973, 1087
XapI RAATTY 2 cut(s) 594, 1065
XbaI TCTAGA 1 cut(s) 571
XcmI CCANNNNNNNNNTGG 1 cut(s) 1097
XmiI GTMKAC 2 cut(s) 681, 900
XspI CTAG 6 cut(s) 209, 572, 584, 890, 926, 1246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.