Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005386

Physical Location & Seq

Genomic Coordinates Reverse (-)

4568503 .. 4570173

Gene Structure 1671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG065800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGATTAAGCCTTGGGATCCTTGGTGGTTGAAGCCTTCTGCCAGGACAATATCCTTCAGCAAAGAAGGAACCCAACTTATCCAACCGCTTGCCAAAGAGGACGAACCAATGTCACCAGAAGAGGATCAAGAAAGCAGTCAAGCAAGTGAGATTCCACCAGGTCCTGAGACACCACTGCCTCCCCTCAGCAAGCTTAGTTCCGCGAAGCCATCGCCATTCTTAGCTGTTCATCTGGTCGACATTATATACAGCTACTGCTTTGCTCTTCGTCTCTACAATGGTGATTGGCAATCAGATGCCACAGGCTCAGCTATGGTAGTGCTCTCCGTGTCATCTGTGTTGGGTCAAGGAGGGCAGCCGGAGACTGTCCTGGAAGCTCTATCTTATTGCTTGGAGCAGACCTGCTCTCCGGCTTTCAGACAGATGGGTGGCGTGCAATTTGGACTAGGTCTCGTAGATGATGTAATAACCCTATTAGCATTAGGAACCCCTGCATTGCTGTGCTTGCTTTGTGATCTGCAGAGGATGGTCCAGGCCGGGGAGACCGAGCTGAAATCAGAGAAACCACGAAAATCAAGAAGAGCTGAAATTAGGAGTAAGCTGAAGCAGGCCGAAAGGAAAATCTACTTCCTCATGTGTTGGGTCCACGAGCAACCTGGGGAAGCTTGGTCTTCCTTAGGAGCCATCGTAAGGGCAGAGAAGAGTTCAGCTATGAACTATGAAGCTGTCTCAAGGTCTGGCAAACCGGACAACAAAGCAGAACCCAGGAGCAAAGTTTTGATTCAAGAGATTAAAGATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SHQ1 zf-HIT

Protein Analysis

267

Amino Acids

29.47

Weight (kDa)

5.44

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63830
fragaria_vesca	FvH4_4g16080 FvH4_4g16080 FvH4_4g16080 FvH4_4g16080
malus_domestica	MD06G1114600.v1.1
prunus_persica	Prupe.5G127300_v2.0.a1
pyrus_communis	pycom06g10740
rosa_chinensis	RchiOBHm_Chr7g0184121 RchiOBHm_Chr7g0186571
rosa_laevigata	RLG00000004831
rosa_multiflora	Rmu_sc0000645.1_g000018 Rmu_sc0004712.1_g000003 Rmu_sc0025350.1_g000008
rosa_roxburghii	Rroxscaffold_3G00268020 Rroxscaffold_3G00269860
rosa_rugosa	Rorug06G0463200 Rorug06G0475200
rosa_samantha	Rh7AG065800 Rh7AG082600 Rh7BG064400 Rh7BG081700 Rh7CG065000 Rh7CG082000 Rh7DG064600 Rh7DG083000
rosa_wichuraiana	Rw7G005300 Rw7G006900 Rw7G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	410
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	1 cut(s)	203
AciI	CCGC	2 cut(s)	86, 201
AclWI	GGATC	3 cut(s)	11, 24, 132
AcuI	CTGAAG	2 cut(s)	40, 623
AfiI	CCNNNNNNNGG	2 cut(s)	538, 690
AgsI	TTSAA	2 cut(s)	31, 785
AjnI	CCWGG	6 cut(s)	41, 157, 369, 531, 655, 764
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	6 cut(s)	161, 275, 356, 455, 536, 733
AlwI	GGATC	3 cut(s)	11, 24, 132
AlwNI	CAGNNNCTG	2 cut(s)	164, 255
AoxI	GGCC	2 cut(s)	534, 609
ApeKI	GCWGC	1 cut(s)	355
AspS9I	GGNCC	3 cut(s)	161, 529, 643
AsuC2I	CCSGG	1 cut(s)	538
AsuHPI	GGTGA	2 cut(s)	105, 293
AvaII	GGWCC	3 cut(s)	161, 529, 643
AxyI	CCTNAGG	1 cut(s)	676
BamHI	GGATCC	1 cut(s)	16
BauI	CACGAG	1 cut(s)	647
BbsI	GAAGAC	1 cut(s)	663
Bbv12I	GWGCWC	1 cut(s)	324
BbvCI	CCTCAGC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	4 cut(s)	217, 418, 520, 692
BciT130I	CCWGG	6 cut(s)	43, 159, 371, 533, 657, 766
BcnI	CCSGG	1 cut(s)	538
BcoDI	GTCTC	6 cut(s)	161, 275, 356, 455, 536, 733
BfaI	CTAG	2 cut(s)	446, 802
BfmI	CTRYAG	1 cut(s)	518
BfuAI	ACCTGC	1 cut(s)	410
BisI	GCNGC	1 cut(s)	356
BlpI	GCTNAGC	1 cut(s)	307
BlsI	GCNGC	1 cut(s)	357
Bme1390I	CCNGG	7 cut(s)	43, 159, 371, 533, 538, 657, 766
Bme18I	GGWCC	3 cut(s)	161, 529, 643
BmgT120I	GGNCC	3 cut(s)	161, 529, 643
BmiI	GGNNCC	5 cut(s)	18, 70, 487, 644, 682
BmrFI	CCNGG	7 cut(s)	43, 159, 371, 533, 538, 657, 766
BmsI	GCATC	1 cut(s)	286
BpiI	GAAGAC	1 cut(s)	663
Bpu10I	CCTNAGC	1 cut(s)	185
Bpu1102I	GCTNAGC	1 cut(s)	307
BpuEI	CTTGAG	1 cut(s)	715
BpuMI	CCSGG	1 cut(s)	538
BsaI	GGTCTC	2 cut(s)	455, 536
BsaJI	CCNNGG	5 cut(s)	11, 20, 537, 656, 764
BsaWI	WCCGGW	1 cut(s)	745
BsaXI	ACNNNNNCTCC	4 cut(s)	391, 421, 672, 702
Bsc4I	CCNNNNNNNGG	2 cut(s)	538, 690
Bse21I	CCTNAGG	1 cut(s)	676
Bse3DI	GCAATG	1 cut(s)	494
BseBI	CCWGG	6 cut(s)	43, 159, 371, 533, 657, 766
BseDI	CCNNGG	5 cut(s)	11, 20, 537, 656, 764
BseGI	GGATG	1 cut(s)	531
BseLI	CCNNNNNNNGG	2 cut(s)	538, 690
BseMI	GCAATG	1 cut(s)	494
BseMII	CTCAG	3 cut(s)	156, 199, 321
BseXI	GCAGC	1 cut(s)	367
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	2 cut(s)	536, 611
BsiHKAI	GWGCWC	1 cut(s)	324
BsiSI	CCGG	4 cut(s)	359, 410, 537, 746
BslI	CCNNNNNNNGG	2 cut(s)	538, 690
BsmAI	GTCTC	6 cut(s)	161, 275, 356, 455, 536, 733
BsmBI	CGTCTC	1 cut(s)	275
BsnI	GGCC	2 cut(s)	536, 611
Bso31I	GGTCTC	2 cut(s)	455, 536
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	3 cut(s)	16, 124, 514
Bsp1720I	GCTNAGC	1 cut(s)	307
BspACI	CCGC	2 cut(s)	86, 201
BspANI	GGCC	2 cut(s)	536, 611
BspCNI	CTCAG	3 cut(s)	157, 198, 320
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	5 cut(s)	18, 70, 487, 644, 682
BspMAI	CTGCAG	1 cut(s)	522
BspMI	ACCTGC	1 cut(s)	410
BspPI	GGATC	3 cut(s)	11, 24, 132
BspQI	GCTCTTC	2 cut(s)	270, 574
BspTNI	GGTCTC	2 cut(s)	455, 536
BsrDI	GCAATG	1 cut(s)	494
BssECI	CCNNGG	5 cut(s)	11, 20, 537, 656, 764
BssMI	GATC	3 cut(s)	16, 124, 514
BssSI	CACGAG	1 cut(s)	647
BssT1I	CCWWGG	2 cut(s)	11, 20
Bst2BI	CACGAG	1 cut(s)	647
Bst2UI	CCWGG	6 cut(s)	43, 159, 371, 533, 657, 766
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	4 cut(s)	114, 270, 574, 695
BstC8I	GCNNGC	5 cut(s)	90, 191, 434, 506, 609
BstDEI	CTNAG	6 cut(s)	165, 185, 194, 220, 307, 676
BstF5I	GGATG	1 cut(s)	531
BstFNI	CGCG	1 cut(s)	203
BstKTI	GATC	3 cut(s)	19, 127, 517
BstMAI	GTCTC	6 cut(s)	161, 275, 356, 455, 536, 733
BstMBI	GATC	3 cut(s)	16, 124, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	505
BstNI	CCWGG	6 cut(s)	43, 159, 371, 533, 657, 766
BstSCI	CCNGG	7 cut(s)	41, 157, 369, 531, 536, 655, 764
BstSFI	CTRYAG	1 cut(s)	518
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	367
BstV2I	GAAGAC	1 cut(s)	663
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
Bsu36I	CCTNAGG	1 cut(s)	676
BsuRI	GGCC	2 cut(s)	536, 611
BtgZI	GCGATG	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	531
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	173
BveI	ACCTGC	1 cut(s)	410
Cac8I	GCNNGC	5 cut(s)	90, 191, 434, 506, 609
CaiI	CAGNNNCTG	2 cut(s)	164, 255
Cfr13I	GGNCC	3 cut(s)	161, 529, 643
CsiI	ACCWGGT	1 cut(s)	157
CviAII	CATG	1 cut(s)	634
DdeI	CTNAG	6 cut(s)	165, 185, 194, 220, 307, 676
DpnI	GATC	3 cut(s)	18, 126, 516
DpnII	GATC	3 cut(s)	16, 124, 514
Eam1104I	CTCTTC	4 cut(s)	114, 270, 574, 695
EarI	CTCTTC	4 cut(s)	114, 270, 574, 695
Eco130I	CCWWGG	2 cut(s)	11, 20
Eco31I	GGTCTC	2 cut(s)	455, 536
Eco32I	GATATC	1 cut(s)	799
Eco47I	GGWCC	3 cut(s)	161, 529, 643
Eco57I	CTGAAG	2 cut(s)	40, 623
Eco81I	CCTNAGG	1 cut(s)	676
EcoO109I	RGGNCCY	1 cut(s)	161
EcoRII	CCWGG	6 cut(s)	41, 157, 369, 531, 655, 764
EcoRV	GATATC	1 cut(s)	799
EcoT14I	CCWWGG	2 cut(s)	11, 20
ErhI	CCWWGG	2 cut(s)	11, 20
Esp3I	CGTCTC	1 cut(s)	275
FaeI	CATG	1 cut(s)	637
FaiI	YATR	6 cut(s)	245, 247, 314, 635, 713, 720
FatI	CATG	1 cut(s)	633
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	356
FokI	GGATG	1 cut(s)	538
Fsp4HI	GCNGC	1 cut(s)	356
FspBI	CTAG	2 cut(s)	446, 802
GluI	GCNGC	1 cut(s)	356
HaeIII	GGCC	2 cut(s)	536, 611
HapII	CCGG	4 cut(s)	359, 410, 537, 746
Hin1II	CATG	1 cut(s)	637
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HindIII	AAGCTT	2 cut(s)	191, 663
HinfI	GANTC	2 cut(s)	151, 781
HpaII	CCGG	4 cut(s)	359, 410, 537, 746
HphI	GGTGA	2 cut(s)	105, 293
Hpy166II	GTNNAC	2 cut(s)	238, 646
Hpy188I	TCNGA	3 cut(s)	295, 419, 559
Hpy188III	TCNNGA	4 cut(s)	128, 164, 576, 785
Hpy8I	GTNNAC	2 cut(s)	238, 646
HpyAV	CCTTC	3 cut(s)	45, 59, 64
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	3 cut(s)	436, 494, 520
HpyF10VI	GCNNNNNNNGC	1 cut(s)	505
HpyF3I	CTNAG	6 cut(s)	165, 185, 194, 220, 307, 676
Hsp92II	CATG	1 cut(s)	637
Kzo9I	GATC	3 cut(s)	16, 124, 514
LguI	GCTCTTC	2 cut(s)	270, 574
LmnI	GCTCC	3 cut(s)	394, 680, 768
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	1 cut(s)	286
MabI	ACCWGGT	1 cut(s)	157
MaeI	CTAG	2 cut(s)	446, 802
MaeIII	GTNAC	1 cut(s)	111
MalI	GATC	3 cut(s)	18, 126, 516
MboI	GATC	3 cut(s)	16, 124, 514
MboII	GAAGA	5 cut(s)	131, 257, 591, 663, 712
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	2 cut(s)	437, 588
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	7 cut(s)	91, 115, 189, 194, 344, 516, 641
MseI	TTAA	2 cut(s)	6, 792
MslI	CAYNNNNRTG	1 cut(s)	499
MspI	CCGG	4 cut(s)	359, 410, 537, 746
MspR9I	CCNGG	7 cut(s)	43, 159, 371, 533, 538, 657, 766
MvaI	CCWGG	6 cut(s)	43, 159, 371, 533, 657, 766
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	505
NciI	CCSGG	1 cut(s)	538
NdeII	GATC	3 cut(s)	16, 124, 514
NlaIII	CATG	1 cut(s)	637
NlaIV	GGNNCC	5 cut(s)	18, 70, 487, 644, 682
NmuCI	GTSAC	1 cut(s)	111
PciSI	GCTCTTC	2 cut(s)	270, 574
PfeI	GAWTC	2 cut(s)	151, 781
PflFI	GACNNNGTC	1 cut(s)	447
PfoI	TCCNGGA	1 cut(s)	369
PkrI	GCNGC	1 cut(s)	357
PpuMI	RGGWCCY	1 cut(s)	161
Psp5II	RGGWCCY	1 cut(s)	161
Psp6I	CCWGG	6 cut(s)	41, 157, 369, 531, 655, 764
PspGI	CCWGG	6 cut(s)	41, 157, 369, 531, 655, 764
PspN4I	GGNNCC	5 cut(s)	18, 70, 487, 644, 682
PspPI	GGNCC	3 cut(s)	161, 529, 643
PspPPI	RGGWCCY	1 cut(s)	161
PstI	CTGCAG	1 cut(s)	522
PstNI	CAGNNNCTG	2 cut(s)	164, 255
PsuI	RGATCY	1 cut(s)	16
PsyI	GACNNNGTC	1 cut(s)	447
RseI	CAYNNNNRTG	1 cut(s)	499
SalI	GTCGAC	1 cut(s)	236
SapI	GCTCTTC	2 cut(s)	270, 574
SaqAI	TTAA	2 cut(s)	6, 792
SatI	GCNGC	1 cut(s)	356
Sau3AI	GATC	3 cut(s)	16, 124, 514
Sau96I	GGNCC	3 cut(s)	161, 529, 643
ScrFI	CCNGG	7 cut(s)	43, 159, 371, 533, 538, 657, 766
SduI	GDGCHC	1 cut(s)	324
SexAI	ACCWGGT	1 cut(s)	157
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	1 cut(s)	518
SinI	GGWCC	3 cut(s)	161, 529, 643
SmiMI	CAYNNNNRTG	1 cut(s)	499
SmlI	CTYRAG	1 cut(s)	730
SmoI	CTYRAG	1 cut(s)	730
Sse9I	AATT	2 cut(s)	437, 588
SsiI	CCGC	2 cut(s)	86, 201
SspMI	CTAG	2 cut(s)	446, 802
StyD4I	CCNGG	7 cut(s)	41, 157, 369, 531, 536, 655, 764
StyI	CCWWGG	2 cut(s)	11, 20
TaaI	ACNGT	1 cut(s)	367
TaqI	TCGA	1 cut(s)	237
TaqII	GACCGA	1 cut(s)	560
TasI	AATT	2 cut(s)	437, 588
TfiI	GAWTC	2 cut(s)	151, 781
Tru1I	TTAA	2 cut(s)	6, 792
Tru9I	TTAA	2 cut(s)	6, 792
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	111
TseI	GCWGC	1 cut(s)	355
Tsp45I	GTSAC	1 cut(s)	111
TspDTI	ATGAA	3 cut(s)	218, 728, 735
TspGWI	ACGGA	1 cut(s)	316
TspRI	CASTG	1 cut(s)	180
Tth111I	GACNNNGTC	1 cut(s)	447
VpaK11BI	GGWCC	3 cut(s)	161, 529, 643
XcmI	CCANNNNNNNNNTGG	1 cut(s)	653
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	2 cut(s)	446, 802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.