Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005386

Physical Location & Seq

Genomic Coordinates Reverse (-)

4692891 .. 4693610

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG065000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGATGAGGATGTGGATGCTGATTCTGCACTGTCCGAAGAGACTATCCAAAAAGTGCTGGCTGGAGGTGAAGTTAGTTTTGATGATCTATCTGCAGAAGGAAAGAAACTATTCCAAAGAGCTGTTGCTTCTGGAGAACCGAGCAAGACGATTAAGCCTTGGGATCCTTGGTGGTTGAAGCCGTCTGCCAGGACAATATCGTTCAGCAAAGAAGGAACCCAACTAATCCAACCGCTTGCCAAAGAGGACGAACCAATGTCACCAGAAGATGATCAAGAAAGCAGTCGAGCAAGTGAGATTCCACCAGGTCCTGAGACACCACTGCCTCCCCTCGGCAAGCTTAGTTCTGCGAAGCCATCACCATTCTTAGCTGTTCATCTGGTTGACATTATATACAGCTACTGCTTCGCTCTTCGTCTCTACAATAGTGATTGGCAATCAGATGCCACAGGCTCAGCTATGGTCGTGCTCTCCGTGTCATCAGTATTGGGTCAAGGAGGGCAGCCGGAGACTGTCCTGGAAGCTCTATCTTATTGCTTGGAGCAGACCTGCTCTCCAGCTTTCAGACAAATGGGTGGCTTGCAGTTTGGACTAGGTCTCGTAGACGATGTGATAACCCTATTAACATTAGGAACCGCATTGCTGTGCTTGCTTTGTGATCTGCAGAGGATGGTCCAGACCGGGGAGATCAGAGAAACCACGAAAATCAAGAAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SHQ1 zf-HIT

Protein Analysis

239

Amino Acids

25.88

Weight (kDa)

4.49

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63830
fragaria_vesca	FvH4_4g16080 FvH4_4g16080 FvH4_4g16080 FvH4_4g16080
malus_domestica	MD06G1114600.v1.1
prunus_persica	Prupe.5G127300_v2.0.a1
pyrus_communis	pycom06g10740
rosa_chinensis	RchiOBHm_Chr7g0184121 RchiOBHm_Chr7g0186571
rosa_laevigata	RLG00000004831
rosa_multiflora	Rmu_sc0000645.1_g000018 Rmu_sc0004712.1_g000003 Rmu_sc0025350.1_g000008
rosa_roxburghii	Rroxscaffold_3G00268020 Rroxscaffold_3G00269860
rosa_rugosa	Rorug06G0463200 Rorug06G0475200
rosa_samantha	Rh7AG065800 Rh7AG082600 Rh7BG064400 Rh7BG081700 Rh7CG065000 Rh7CG082000 Rh7DG064600 Rh7DG083000
rosa_wichuraiana	Rw7G005300 Rw7G006900 Rw7G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	557
AccI	GTMKAC	1 cut(s)	603
AciI	CCGC	2 cut(s)	233, 636
AclWI	GGATC	2 cut(s)	158, 171
AfiI	CCNNNNNNNGG	2 cut(s)	332, 682
AgsI	TTSAA	1 cut(s)	178
AjnI	CCWGG	3 cut(s)	188, 304, 516
AluBI	AGCT	8 cut(s)	122, 340, 371, 399, 458, 524, 560, 717
AluI	AGCT	8 cut(s)	122, 340, 371, 399, 458, 524, 560, 717
Alw21I	GWGCWC	1 cut(s)	471
Alw26I	GTCTC	5 cut(s)	35, 308, 422, 503, 602
AlwI	GGATC	2 cut(s)	158, 171
AlwNI	CAGNNNCTG	2 cut(s)	311, 402
ApeKI	GCWGC	1 cut(s)	502
Asp700I	GAANNNNTTC	1 cut(s)	110
AspS9I	GGNCC	2 cut(s)	308, 673
AsuC2I	CCSGG	1 cut(s)	682
AsuHPI	GGTGA	3 cut(s)	80, 252, 351
AvaII	GGWCC	2 cut(s)	308, 673
BamHI	GGATCC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	2 cut(s)	364, 664
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	3 cut(s)	190, 306, 518
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	682
BcoDI	GTCTC	5 cut(s)	35, 308, 422, 503, 602
BfaI	CTAG	1 cut(s)	593
BfmI	CTRYAG	2 cut(s)	93, 662
BfuAI	ACCTGC	1 cut(s)	557
BisI	GCNGC	1 cut(s)	503
BlpI	GCTNAGC	1 cut(s)	454
BlsI	GCNGC	1 cut(s)	504
Bme1390I	CCNGG	4 cut(s)	190, 306, 518, 682
Bme18I	GGWCC	2 cut(s)	308, 673
BmgT120I	GGNCC	2 cut(s)	308, 673
BmiI	GGNNCC	3 cut(s)	165, 217, 634
BmrFI	CCNGG	4 cut(s)	190, 306, 518, 682
BmsI	GCATC	2 cut(s)	7, 433
BpmI	CTGGAG	3 cut(s)	84, 153, 540
Bpu1102I	GCTNAGC	1 cut(s)	454
BpuMI	CCSGG	1 cut(s)	682
BsaI	GGTCTC	1 cut(s)	602
BsaJI	CCNNGG	4 cut(s)	158, 167, 331, 681
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 538, 568
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 682
Bse3DI	GCAATG	1 cut(s)	638
BseBI	CCWGG	3 cut(s)	190, 306, 518
BseDI	CCNNGG	4 cut(s)	158, 167, 331, 681
BseGI	GGATG	4 cut(s)	10, 16, 22, 675
BseLI	CCNNNNNNNGG	2 cut(s)	332, 682
BseMI	GCAATG	1 cut(s)	638
BseMII	CTCAG	2 cut(s)	303, 468
BseXI	GCAGC	1 cut(s)	514
BsgI	GTGCAG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	471
BsiSI	CCGG	2 cut(s)	506, 681
BslI	CCNNNNNNNGG	2 cut(s)	332, 682
BsmAI	GTCTC	5 cut(s)	35, 308, 422, 503, 602
BsmBI	CGTCTC	1 cut(s)	422
Bso31I	GGTCTC	1 cut(s)	602
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp143I	GATC	5 cut(s)	85, 163, 271, 658, 687
Bsp1720I	GCTNAGC	1 cut(s)	454
BspACI	CCGC	2 cut(s)	233, 636
BspCNI	CTCAG	2 cut(s)	304, 467
BspLI	GGNNCC	3 cut(s)	165, 217, 634
BspMAI	CTGCAG	2 cut(s)	97, 666
BspMI	ACCTGC	1 cut(s)	557
BspPI	GGATC	2 cut(s)	158, 171
BspQI	GCTCTTC	2 cut(s)	417, 707
BspTNI	GGTCTC	1 cut(s)	602
BsrDI	GCAATG	1 cut(s)	638
BssECI	CCNNGG	4 cut(s)	158, 167, 331, 681
BssMI	GATC	5 cut(s)	85, 163, 271, 658, 687
BssT1I	CCWWGG	2 cut(s)	158, 167
Bst2UI	CCWGG	3 cut(s)	190, 306, 518
Bst4CI	ACNGT	2 cut(s)	33, 514
Bst6I	CTCTTC	3 cut(s)	33, 417, 707
BstC8I	GCNNGC	5 cut(s)	60, 237, 338, 581, 650
BstDEI	CTNAG	4 cut(s)	312, 341, 367, 454
BstF5I	GGATG	4 cut(s)	10, 16, 22, 675
BstKTI	GATC	5 cut(s)	88, 166, 274, 661, 690
BstMAI	GTCTC	5 cut(s)	35, 308, 422, 503, 602
BstMBI	GATC	5 cut(s)	85, 163, 271, 658, 687
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 649
BstNI	CCWGG	3 cut(s)	190, 306, 518
BstSCI	CCNGG	4 cut(s)	188, 304, 516, 680
BstSFI	CTRYAG	2 cut(s)	93, 662
BstV1I	GCAGC	1 cut(s)	514
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BtsCI	GGATG	4 cut(s)	10, 16, 22, 675
BtsI	GCAGTG	1 cut(s)	320
BtsIMutI	CAGTG	2 cut(s)	29, 320
BveI	ACCTGC	1 cut(s)	557
Cac8I	GCNNGC	5 cut(s)	60, 237, 338, 581, 650
CaiI	CAGNNNCTG	2 cut(s)	311, 402
Cfr13I	GGNCC	2 cut(s)	308, 673
CsiI	ACCWGGT	1 cut(s)	304
DdeI	CTNAG	4 cut(s)	312, 341, 367, 454
DpnI	GATC	5 cut(s)	87, 165, 273, 660, 689
DpnII	GATC	5 cut(s)	85, 163, 271, 658, 687
Eam1104I	CTCTTC	3 cut(s)	33, 417, 707
EarI	CTCTTC	3 cut(s)	33, 417, 707
Eco130I	CCWWGG	2 cut(s)	158, 167
Eco31I	GGTCTC	1 cut(s)	602
Eco47I	GGWCC	2 cut(s)	308, 673
EcoO109I	RGGNCCY	1 cut(s)	308
EcoRII	CCWGG	3 cut(s)	188, 304, 516
EcoT14I	CCWWGG	2 cut(s)	158, 167
ErhI	CCWWGG	2 cut(s)	158, 167
Esp3I	CGTCTC	1 cut(s)	422
FaiI	YATR	3 cut(s)	392, 394, 461
FbaI	TGATCA	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	1 cut(s)	503
FokI	GGATG	4 cut(s)	17, 23, 29, 682
Fsp4HI	GCNGC	1 cut(s)	503
FspBI	CTAG	1 cut(s)	593
GluI	GCNGC	1 cut(s)	503
GsuI	CTGGAG	3 cut(s)	84, 153, 540
HapII	CCGG	2 cut(s)	506, 681
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	2 cut(s)	23, 298
HpaII	CCGG	2 cut(s)	506, 681
HphI	GGTGA	3 cut(s)	80, 252, 351
Hpy166II	GTNNAC	2 cut(s)	385, 604
Hpy188I	TCNGA	4 cut(s)	37, 442, 566, 692
Hpy188III	TCNNGA	5 cut(s)	132, 275, 311, 676, 709
Hpy8I	GTNNAC	2 cut(s)	385, 604
HpyAV	CCTTC	2 cut(s)	92, 206
HpyCH4III	ACNGT	2 cut(s)	33, 514
HpyCH4V	TGCA	4 cut(s)	29, 95, 583, 664
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 649
HpyF3I	CTNAG	4 cut(s)	312, 341, 367, 454
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	5 cut(s)	85, 163, 271, 658, 687
LguI	GCTCTTC	2 cut(s)	417, 707
LmnI	GCTCC	1 cut(s)	541
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	2 cut(s)	7, 433
MabI	ACCWGGT	1 cut(s)	304
MaeI	CTAG	1 cut(s)	593
MaeIII	GTNAC	1 cut(s)	258
MalI	GATC	5 cut(s)	87, 165, 273, 660, 689
MboI	GATC	5 cut(s)	85, 163, 271, 658, 687
MboII	GAAGA	3 cut(s)	50, 278, 404
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	471
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	6 cut(s)	59, 238, 336, 341, 491, 660
MroXI	GAANNNNTTC	1 cut(s)	110
MseI	TTAA	2 cut(s)	153, 623
MslI	CAYNNNNRTG	1 cut(s)	643
MspI	CCGG	2 cut(s)	506, 681
MspR9I	CCNGG	4 cut(s)	190, 306, 518, 682
MvaI	CCWGG	3 cut(s)	190, 306, 518
MwoI	GCNNNNNNNGC	2 cut(s)	26, 649
NciI	CCSGG	1 cut(s)	682
NdeII	GATC	5 cut(s)	85, 163, 271, 658, 687
NlaIV	GGNNCC	3 cut(s)	165, 217, 634
NmeAIII	GCCGAG	1 cut(s)	312
NmuCI	GTSAC	1 cut(s)	258
PciSI	GCTCTTC	2 cut(s)	417, 707
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PdmI	GAANNNNTTC	1 cut(s)	110
PfeI	GAWTC	2 cut(s)	23, 298
PflFI	GACNNNGTC	1 cut(s)	594
PfoI	TCCNGGA	1 cut(s)	516
PkrI	GCNGC	1 cut(s)	504
PpuMI	RGGWCCY	1 cut(s)	308
Psp5II	RGGWCCY	1 cut(s)	308
Psp6I	CCWGG	3 cut(s)	188, 304, 516
PspGI	CCWGG	3 cut(s)	188, 304, 516
PspN4I	GGNNCC	3 cut(s)	165, 217, 634
PspPI	GGNCC	2 cut(s)	308, 673
PspPPI	RGGWCCY	1 cut(s)	308
PstI	CTGCAG	2 cut(s)	97, 666
PstNI	CAGNNNCTG	2 cut(s)	311, 402
PsuI	RGATCY	1 cut(s)	163
PsyI	GACNNNGTC	1 cut(s)	594
RseI	CAYNNNNRTG	1 cut(s)	643
SapI	GCTCTTC	2 cut(s)	417, 707
SaqAI	TTAA	2 cut(s)	153, 623
SatI	GCNGC	1 cut(s)	503
Sau3AI	GATC	5 cut(s)	85, 163, 271, 658, 687
Sau96I	GGNCC	2 cut(s)	308, 673
ScrFI	CCNGG	4 cut(s)	190, 306, 518, 682
SduI	GDGCHC	1 cut(s)	471
SexAI	ACCWGGT	1 cut(s)	304
SfaNI	GCATC	2 cut(s)	7, 433
SfcI	CTRYAG	2 cut(s)	93, 662
SinI	GGWCC	2 cut(s)	308, 673
SmiMI	CAYNNNNRTG	1 cut(s)	643
SsiI	CCGC	2 cut(s)	233, 636
SspMI	CTAG	1 cut(s)	593
StyD4I	CCNGG	4 cut(s)	188, 304, 516, 680
StyI	CCWWGG	2 cut(s)	158, 167
TaaI	ACNGT	2 cut(s)	33, 514
TaqI	TCGA	1 cut(s)	286
TfiI	GAWTC	2 cut(s)	23, 298
Tru1I	TTAA	2 cut(s)	153, 623
Tru9I	TTAA	2 cut(s)	153, 623
TscAI	CASTG	2 cut(s)	36, 327
TseFI	GTSAC	1 cut(s)	258
TseI	GCWGC	1 cut(s)	502
Tsp45I	GTSAC	1 cut(s)	258
TspDTI	ATGAA	1 cut(s)	365
TspGWI	ACGGA	1 cut(s)	463
TspRI	CASTG	2 cut(s)	36, 327
Tth111I	GACNNNGTC	1 cut(s)	594
VpaK11BI	GGWCC	2 cut(s)	308, 673
XmiI	GTMKAC	1 cut(s)	603
XmnI	GAANNNNTTC	1 cut(s)	110
XspI	CTAG	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.