Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004712.1

Orthogroup ID

OG0005386

Physical Location & Seq

Genomic Coordinates Forward (+)

20951 .. 21760

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004712.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ctggctggaggtgaagttagttttgatgatctatctgcagaagaaaagaaactattccaaagagctgttgcttctggagaactgggcaagacgattaagccttgggatccttggtggttgaagccgtctgccaggacaatatcgttcagcgaagaaggaacccaactaatccaaccgcttgccaaagtggacgaaacaatgtcaccagaagatgatcaagaaagcagtcaagcaagtgagattccaccaggtcctgagacaccactgcctcccctcagcaagcttagttccgcgaagccatcaccattcttagctgttcatctggttgacattatatacagctactgcttcgctcttagtctctacaatagtgattggcaatcagatgccacaggctcagctatggtcgtgctctccgtgtcatcagtattgggtcaaggagggcagccggagactgtcctggaagctctatcttattgcttggagcagacctgctctccagctttcagacagatgggtggcttgcagtttggactaggtctcgtagacgatgcaataaccctattaacattaggaaccgcattgctgtgcttgctttgtgatctgcagaggatggtccaggccggggagaccgagctgaaatcagagaaaccacgaaaatcaagaagagctgaaattaggagtacgctgaagcaggccgaaaggaaaatctacttcctcaagtgttgggtccgcgagcaacctggggaagcttggtcttccttaggagtcatggcaagggcagagaaaaagttcatagctaaactatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SHQ1 zf-HIT

Protein Analysis

269

Amino Acids

29.47

Weight (kDa)

5.09

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63830
fragaria_vesca	FvH4_4g16080 FvH4_4g16080 FvH4_4g16080 FvH4_4g16080
malus_domestica	MD06G1114600.v1.1
prunus_persica	Prupe.5G127300_v2.0.a1
pyrus_communis	pycom06g10740
rosa_chinensis	RchiOBHm_Chr7g0184121 RchiOBHm_Chr7g0186571
rosa_laevigata	RLG00000004831
rosa_multiflora	Rmu_sc0000645.1_g000018 Rmu_sc0004712.1_g000003 Rmu_sc0025350.1_g000008
rosa_roxburghii	Rroxscaffold_3G00268020 Rroxscaffold_3G00269860
rosa_rugosa	Rorug06G0463200 Rorug06G0475200
rosa_samantha	Rh7AG065800 Rh7AG082600 Rh7BG064400 Rh7BG081700 Rh7CG065000 Rh7CG082000 Rh7DG064600 Rh7DG083000
rosa_wichuraiana	Rw7G005300 Rw7G006900 Rw7G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	500
AccI	GTMKAC	1 cut(s)	546
AccII	CGCG	2 cut(s)	293, 735
AciI	CCGC	4 cut(s)	176, 291, 579, 733
AclWI	GGATC	2 cut(s)	101, 114
AcuI	CTGAAG	1 cut(s)	710
AfaI	GTAC	1 cut(s)	685
AfiI	CCNNNNNNNGG	1 cut(s)	625
AgsI	TTSAA	1 cut(s)	121
AjnI	CCWGG	5 cut(s)	131, 247, 459, 618, 742
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	5 cut(s)	251, 365, 446, 545, 623
AlwI	GGATC	2 cut(s)	101, 114
AlwNI	CAGNNNCTG	2 cut(s)	254, 345
AoxI	GGCC	2 cut(s)	621, 696
ApeKI	GCWGC	1 cut(s)	445
Asp700I	GAANNNNTTC	2 cut(s)	53, 791
AspS9I	GGNCC	3 cut(s)	251, 616, 730
AsuC2I	CCSGG	1 cut(s)	625
AsuHPI	GGTGA	3 cut(s)	23, 195, 294
AvaII	GGWCC	3 cut(s)	251, 616, 730
AxyI	CCTNAGG	1 cut(s)	763
BamHI	GGATCC	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	750
Bbv12I	GWGCWC	1 cut(s)	414
BbvCI	CCTCAGC	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	3 cut(s)	307, 508, 607
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	5 cut(s)	133, 249, 461, 620, 744
BclI	TGATCA	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	625
BcoDI	GTCTC	5 cut(s)	251, 365, 446, 545, 623
BfaI	CTAG	1 cut(s)	536
BfmI	CTRYAG	2 cut(s)	36, 605
BfuAI	ACCTGC	1 cut(s)	500
BisI	GCNGC	1 cut(s)	446
BlpI	GCTNAGC	1 cut(s)	397
BlsI	GCNGC	1 cut(s)	447
Bme1390I	CCNGG	6 cut(s)	133, 249, 461, 620, 625, 744
Bme18I	GGWCC	3 cut(s)	251, 616, 730
BmgT120I	GGNCC	3 cut(s)	251, 616, 730
BmiI	GGNNCC	4 cut(s)	108, 160, 577, 731
BmrFI	CCNGG	6 cut(s)	133, 249, 461, 620, 625, 744
BmrI	ACTGGG	1 cut(s)	92
BmsI	GCATC	2 cut(s)	376, 541
BmuI	ACTGGG	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	750
BpmI	CTGGAG	3 cut(s)	27, 96, 483
Bpu10I	CCTNAGC	1 cut(s)	275
Bpu1102I	GCTNAGC	1 cut(s)	397
BpuEI	CTTGAG	1 cut(s)	704
BpuMI	CCSGG	1 cut(s)	625
BsaI	GGTCTC	2 cut(s)	545, 623
BsaJI	CCNNGG	4 cut(s)	101, 110, 624, 743
BsaXI	ACNNNNNCTCC	3 cut(s)	30, 481, 511
Bsc4I	CCNNNNNNNGG	1 cut(s)	625
Bse1I	ACTGG	1 cut(s)	87
Bse21I	CCTNAGG	1 cut(s)	763
Bse3DI	GCAATG	1 cut(s)	581
BseBI	CCWGG	5 cut(s)	133, 249, 461, 620, 744
BseDI	CCNNGG	4 cut(s)	101, 110, 624, 743
BseGI	GGATG	1 cut(s)	618
BseLI	CCNNNNNNNGG	1 cut(s)	625
BseMI	GCAATG	1 cut(s)	581
BseMII	CTCAG	3 cut(s)	246, 289, 411
BseNI	ACTGG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	457
Bsh1236I	CGCG	2 cut(s)	293, 735
BshFI	GGCC	2 cut(s)	623, 698
BsiHKAI	GWGCWC	1 cut(s)	414
BsiSI	CCGG	2 cut(s)	449, 624
BslI	CCNNNNNNNGG	1 cut(s)	625
BsmAI	GTCTC	5 cut(s)	251, 365, 446, 545, 623
BsnI	GGCC	2 cut(s)	623, 698
Bso31I	GGTCTC	2 cut(s)	545, 623
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	4 cut(s)	28, 106, 214, 601
Bsp1720I	GCTNAGC	1 cut(s)	397
BspACI	CCGC	4 cut(s)	176, 291, 579, 733
BspANI	GGCC	2 cut(s)	623, 698
BspCNI	CTCAG	3 cut(s)	247, 288, 410
BspFNI	CGCG	2 cut(s)	293, 735
BspLI	GGNNCC	4 cut(s)	108, 160, 577, 731
BspMAI	CTGCAG	2 cut(s)	40, 609
BspMI	ACCTGC	1 cut(s)	500
BspPI	GGATC	2 cut(s)	101, 114
BspQI	GCTCTTC	1 cut(s)	661
BspTNI	GGTCTC	2 cut(s)	545, 623
BsrDI	GCAATG	1 cut(s)	581
BsrI	ACTGG	1 cut(s)	87
BssECI	CCNNGG	4 cut(s)	101, 110, 624, 743
BssMI	GATC	4 cut(s)	28, 106, 214, 601
BssT1I	CCWWGG	2 cut(s)	101, 110
Bst2UI	CCWGG	5 cut(s)	133, 249, 461, 620, 744
Bst4CI	ACNGT	1 cut(s)	457
Bst6I	CTCTTC	1 cut(s)	661
BstC8I	GCNNGC	6 cut(s)	180, 281, 524, 593, 696, 737
BstDEI	CTNAG	7 cut(s)	255, 275, 284, 310, 356, 397, 763
BstF5I	GGATG	1 cut(s)	618
BstFNI	CGCG	2 cut(s)	293, 735
BstKTI	GATC	4 cut(s)	31, 109, 217, 604
BstMAI	GTCTC	5 cut(s)	251, 365, 446, 545, 623
BstMBI	GATC	4 cut(s)	28, 106, 214, 601
BstMWI	GCNNNNNNNGC	1 cut(s)	592
BstNI	CCWGG	5 cut(s)	133, 249, 461, 620, 744
BstSCI	CCNGG	6 cut(s)	131, 247, 459, 618, 623, 742
BstSFI	CTRYAG	2 cut(s)	36, 605
BstUI	CGCG	2 cut(s)	293, 735
BstV1I	GCAGC	1 cut(s)	457
BstV2I	GAAGAC	1 cut(s)	750
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
Bsu36I	CCTNAGG	1 cut(s)	763
BsuRI	GGCC	2 cut(s)	623, 698
BtsCI	GGATG	1 cut(s)	618
BtsI	GCAGTG	1 cut(s)	263
BtsIMutI	CAGTG	1 cut(s)	263
BveI	ACCTGC	1 cut(s)	500
Cac8I	GCNNGC	6 cut(s)	180, 281, 524, 593, 696, 737
CaiI	CAGNNNCTG	2 cut(s)	254, 345
Cfr13I	GGNCC	3 cut(s)	251, 616, 730
CsiI	ACCWGGT	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	684
CviAII	CATG	1 cut(s)	772
CviQI	GTAC	1 cut(s)	684
DdeI	CTNAG	7 cut(s)	255, 275, 284, 310, 356, 397, 763
DpnI	GATC	4 cut(s)	30, 108, 216, 603
DpnII	GATC	4 cut(s)	28, 106, 214, 601
Eam1104I	CTCTTC	1 cut(s)	661
EarI	CTCTTC	1 cut(s)	661
Eco130I	CCWWGG	2 cut(s)	101, 110
Eco31I	GGTCTC	2 cut(s)	545, 623
Eco47I	GGWCC	3 cut(s)	251, 616, 730
Eco57I	CTGAAG	1 cut(s)	710
Eco81I	CCTNAGG	1 cut(s)	763
EcoO109I	RGGNCCY	1 cut(s)	251
EcoRII	CCWGG	5 cut(s)	131, 247, 459, 618, 742
EcoT14I	CCWWGG	2 cut(s)	101, 110
ErhI	CCWWGG	2 cut(s)	101, 110
FaeI	CATG	1 cut(s)	775
FaiI	YATR	6 cut(s)	335, 337, 404, 773, 797, 808
FatI	CATG	1 cut(s)	771
FbaI	TGATCA	1 cut(s)	214
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	1 cut(s)	446
FokI	GGATG	1 cut(s)	625
Fsp4HI	GCNGC	1 cut(s)	446
FspBI	CTAG	1 cut(s)	536
GluI	GCNGC	1 cut(s)	446
GsuI	CTGGAG	3 cut(s)	27, 96, 483
HaeIII	GGCC	2 cut(s)	623, 698
HapII	CCGG	2 cut(s)	449, 624
Hin1II	CATG	1 cut(s)	775
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	2 cut(s)	281, 750
HinfI	GANTC	2 cut(s)	241, 768
HpaII	CCGG	2 cut(s)	449, 624
HphI	GGTGA	3 cut(s)	23, 195, 294
Hpy166II	GTNNAC	3 cut(s)	190, 328, 547
Hpy188I	TCNGA	3 cut(s)	385, 509, 646
Hpy188III	TCNNGA	4 cut(s)	75, 218, 254, 663
Hpy8I	GTNNAC	3 cut(s)	190, 328, 547
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4V	TGCA	4 cut(s)	38, 526, 554, 607
HpyF10VI	GCNNNNNNNGC	1 cut(s)	592
HpyF3I	CTNAG	7 cut(s)	255, 275, 284, 310, 356, 397, 763
Hsp92II	CATG	1 cut(s)	775
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	4 cut(s)	28, 106, 214, 601
LguI	GCTCTTC	1 cut(s)	661
LmnI	GCTCC	1 cut(s)	484
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	2 cut(s)	376, 541
MabI	ACCWGGT	1 cut(s)	247
MaeI	CTAG	1 cut(s)	536
MaeIII	GTNAC	1 cut(s)	201
MalI	GATC	4 cut(s)	30, 108, 216, 603
MboI	GATC	4 cut(s)	28, 106, 214, 601
MboII	GAAGA	5 cut(s)	53, 164, 221, 678, 750
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	1 cut(s)	675
MlyI	GAGTC	1 cut(s)	777
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	5 cut(s)	279, 284, 434, 603, 728
MroXI	GAANNNNTTC	2 cut(s)	53, 791
MseI	TTAA	2 cut(s)	96, 566
MslI	CAYNNNNRTG	1 cut(s)	586
MspI	CCGG	2 cut(s)	449, 624
MspR9I	CCNGG	6 cut(s)	133, 249, 461, 620, 625, 744
MvaI	CCWGG	5 cut(s)	133, 249, 461, 620, 744
MvnI	CGCG	2 cut(s)	293, 735
MwoI	GCNNNNNNNGC	1 cut(s)	592
NciI	CCSGG	1 cut(s)	625
NdeII	GATC	4 cut(s)	28, 106, 214, 601
NlaIII	CATG	1 cut(s)	775
NlaIV	GGNNCC	4 cut(s)	108, 160, 577, 731
NmuCI	GTSAC	1 cut(s)	201
PciSI	GCTCTTC	1 cut(s)	661
PcsI	WCGNNNNNNNCGW	1 cut(s)	414
PdmI	GAANNNNTTC	2 cut(s)	53, 791
PfeI	GAWTC	1 cut(s)	241
PflFI	GACNNNGTC	1 cut(s)	537
PfoI	TCCNGGA	1 cut(s)	459
PkrI	GCNGC	1 cut(s)	447
PleI	GAGTC	1 cut(s)	776
PpsI	GAGTC	1 cut(s)	776
PpuMI	RGGWCCY	1 cut(s)	251
Psp5II	RGGWCCY	1 cut(s)	251
Psp6I	CCWGG	5 cut(s)	131, 247, 459, 618, 742
PspGI	CCWGG	5 cut(s)	131, 247, 459, 618, 742
PspN4I	GGNNCC	4 cut(s)	108, 160, 577, 731
PspPI	GGNCC	3 cut(s)	251, 616, 730
PspPPI	RGGWCCY	1 cut(s)	251
PstI	CTGCAG	2 cut(s)	40, 609
PstNI	CAGNNNCTG	2 cut(s)	254, 345
PsuI	RGATCY	1 cut(s)	106
PsyI	GACNNNGTC	1 cut(s)	537
RsaI	GTAC	1 cut(s)	685
RsaNI	GTAC	1 cut(s)	684
RseI	CAYNNNNRTG	1 cut(s)	586
SapI	GCTCTTC	1 cut(s)	661
SaqAI	TTAA	2 cut(s)	96, 566
SatI	GCNGC	1 cut(s)	446
Sau3AI	GATC	4 cut(s)	28, 106, 214, 601
Sau96I	GGNCC	3 cut(s)	251, 616, 730
SchI	GAGTC	1 cut(s)	777
ScrFI	CCNGG	6 cut(s)	133, 249, 461, 620, 625, 744
SduI	GDGCHC	1 cut(s)	414
SexAI	ACCWGGT	1 cut(s)	247
SfaNI	GCATC	2 cut(s)	376, 541
SfcI	CTRYAG	2 cut(s)	36, 605
SinI	GGWCC	3 cut(s)	251, 616, 730
SmiMI	CAYNNNNRTG	1 cut(s)	586
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
Sse9I	AATT	1 cut(s)	675
SsiI	CCGC	4 cut(s)	176, 291, 579, 733
SspMI	CTAG	1 cut(s)	536
StyD4I	CCNGG	6 cut(s)	131, 247, 459, 618, 623, 742
StyI	CCWWGG	2 cut(s)	101, 110
TaaI	ACNGT	1 cut(s)	457
TaqII	GACCGA	1 cut(s)	647
TasI	AATT	1 cut(s)	675
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	2 cut(s)	96, 566
Tru9I	TTAA	2 cut(s)	96, 566
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	201
TseI	GCWGC	1 cut(s)	445
Tsp45I	GTSAC	1 cut(s)	201
TspDTI	ATGAA	2 cut(s)	308, 784
TspGWI	ACGGA	1 cut(s)	406
TspRI	CASTG	1 cut(s)	270
Tth111I	GACNNNGTC	1 cut(s)	537
VpaK11BI	GGWCC	3 cut(s)	251, 616, 730
XmiI	GTMKAC	1 cut(s)	546
XmnI	GAANNNNTTC	2 cut(s)	53, 791
XspI	CTAG	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.