Rh7DG083000

Zinc finger HIT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0005386
Physical Location & Seq
Forward (+)
6626883 .. 6627374
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG083000.1

Sequence Viewer

Length: 492 bp
ATGGTAGTGCTCTCCGTGTCATCTGTATTGGGTCAAGGAGGGCAGCCGGAGACTGTCCTGGAAGCTCTATCTTATTGCTTGGAGCAGACCTGCTCTCCGGCTTTCAGACAGATGGGTGGCGTGCAATTTGGACTAGGTCTCGTAGATGATGTAATAACCCTATTAACATTAGGAACCCCTGCATTGCTGTGCTTGCTTTGTGATCTGCAGAGGATGGTCCAGGCCGGGGAGACCGAGCTGAAATCAGAGAAACCACGAAAATCAAGAAGAGCTGAAATTAGGAGTAAGCTGAAGCAGGCCGAAAGGAAAATCTACTTCCTCATGTGTTGGGTCCACGAGCAACCTGGGGAAGCTTGGTCTTCCTTAGGAGCCATCGTAAGGGCAGAGAAGAGTTCAGCTATGAACTATGAAGCTGTCTCAAGGTCTGGCAAACCGGACAACAAAGCAGAACCCAGGAGCAAAGTTTTGATTCAAGAGATTAAAGATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SHQ1 zf-HIT

Protein Analysis

163

Amino Acids

17.97

Weight (kDa)

8.28

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 98
AcuI CTGAAG 1 cut(s) 311
AfiI CCNNNNNNNGG 2 cut(s) 226, 378
AgsI TTSAA 1 cut(s) 473
AjnI CCWGG 4 cut(s) 57, 219, 343, 452
AluBI AGCT 7 cut(s) 65, 238, 272, 289, 353, 398, 413
AluI AGCT 7 cut(s) 65, 238, 272, 289, 353, 398, 413
Alw21I GWGCWC 1 cut(s) 12
Alw26I GTCTC 4 cut(s) 44, 143, 224, 421
AoxI GGCC 2 cut(s) 222, 297
ApeKI GCWGC 1 cut(s) 43
AspS9I GGNCC 2 cut(s) 217, 331
AsuC2I CCSGG 1 cut(s) 226
AvaII GGWCC 2 cut(s) 217, 331
AxyI CCTNAGG 1 cut(s) 364
BauI CACGAG 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 55
BccI CCATC 3 cut(s) 106, 208, 380
BciT130I CCWGG 4 cut(s) 59, 221, 345, 454
BcnI CCSGG 1 cut(s) 226
BcoDI GTCTC 4 cut(s) 44, 143, 224, 421
BfaI CTAG 2 cut(s) 134, 490
BfmI CTRYAG 1 cut(s) 206
BfuAI ACCTGC 1 cut(s) 98
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
Bme1390I CCNGG 5 cut(s) 59, 221, 226, 345, 454
Bme18I GGWCC 2 cut(s) 217, 331
BmgT120I GGNCC 2 cut(s) 217, 331
BmiI GGNNCC 3 cut(s) 175, 332, 370
BmrFI CCNGG 5 cut(s) 59, 221, 226, 345, 454
BpiI GAAGAC 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 403
BpuMI CCSGG 1 cut(s) 226
BsaI GGTCTC 2 cut(s) 143, 224
BsaJI CCNNGG 3 cut(s) 225, 344, 452
BsaWI WCCGGW 1 cut(s) 433
BsaXI ACNNNNNCTCC 4 cut(s) 79, 109, 360, 390
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 378
Bse21I CCTNAGG 1 cut(s) 364
Bse3DI GCAATG 1 cut(s) 182
BseBI CCWGG 4 cut(s) 59, 221, 345, 454
BseDI CCNNGG 3 cut(s) 225, 344, 452
BseGI GGATG 1 cut(s) 219
BseLI CCNNNNNNNGG 2 cut(s) 226, 378
BseMI GCAATG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 55
BshFI GGCC 2 cut(s) 224, 299
BsiHKAI GWGCWC 1 cut(s) 12
BsiSI CCGG 4 cut(s) 47, 98, 225, 434
BslI CCNNNNNNNGG 2 cut(s) 226, 378
BsmAI GTCTC 4 cut(s) 44, 143, 224, 421
BsnI GGCC 2 cut(s) 224, 299
Bso31I GGTCTC 2 cut(s) 143, 224
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 1 cut(s) 202
BspANI GGCC 2 cut(s) 224, 299
BspLI GGNNCC 3 cut(s) 175, 332, 370
BspMAI CTGCAG 1 cut(s) 210
BspMI ACCTGC 1 cut(s) 98
BspQI GCTCTTC 1 cut(s) 262
BspTNI GGTCTC 2 cut(s) 143, 224
BsrDI GCAATG 1 cut(s) 182
BssECI CCNNGG 3 cut(s) 225, 344, 452
BssMI GATC 1 cut(s) 202
BssSI CACGAG 1 cut(s) 335
Bst2BI CACGAG 1 cut(s) 335
Bst2UI CCWGG 4 cut(s) 59, 221, 345, 454
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 2 cut(s) 262, 383
BstC8I GCNNGC 3 cut(s) 122, 194, 297
BstDEI CTNAG 1 cut(s) 364
BstF5I GGATG 1 cut(s) 219
BstKTI GATC 1 cut(s) 205
BstMAI GTCTC 4 cut(s) 44, 143, 224, 421
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNI CCWGG 4 cut(s) 59, 221, 345, 454
BstSCI CCNGG 5 cut(s) 57, 219, 224, 343, 452
BstSFI CTRYAG 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 351
Bsu36I CCTNAGG 1 cut(s) 364
BsuRI GGCC 2 cut(s) 224, 299
BtsCI GGATG 1 cut(s) 219
BveI ACCTGC 1 cut(s) 98
Cac8I GCNNGC 3 cut(s) 122, 194, 297
Cfr13I GGNCC 2 cut(s) 217, 331
CviAII CATG 1 cut(s) 322
DdeI CTNAG 1 cut(s) 364
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eam1104I CTCTTC 2 cut(s) 262, 383
EarI CTCTTC 2 cut(s) 262, 383
Eco31I GGTCTC 2 cut(s) 143, 224
Eco32I GATATC 1 cut(s) 487
Eco47I GGWCC 2 cut(s) 217, 331
Eco57I CTGAAG 1 cut(s) 311
Eco81I CCTNAGG 1 cut(s) 364
EcoRII CCWGG 4 cut(s) 57, 219, 343, 452
EcoRV GATATC 1 cut(s) 487
FaeI CATG 1 cut(s) 325
FaiI YATR 3 cut(s) 323, 401, 408
FatI CATG 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 44
FokI GGATG 1 cut(s) 226
Fsp4HI GCNGC 1 cut(s) 44
FspBI CTAG 2 cut(s) 134, 490
GluI GCNGC 1 cut(s) 44
HaeIII GGCC 2 cut(s) 224, 299
HapII CCGG 4 cut(s) 47, 98, 225, 434
Hin1II CATG 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 351
HinfI GANTC 1 cut(s) 469
HpaII CCGG 4 cut(s) 47, 98, 225, 434
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 2 cut(s) 107, 247
Hpy188III TCNNGA 2 cut(s) 264, 473
Hpy8I GTNNAC 1 cut(s) 334
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 3 cut(s) 124, 182, 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpyF3I CTNAG 1 cut(s) 364
Hsp92II CATG 1 cut(s) 325
Kzo9I GATC 1 cut(s) 202
LguI GCTCTTC 1 cut(s) 262
LmnI GCTCC 3 cut(s) 82, 368, 456
Lsp1109I GCAGC 1 cut(s) 55
MaeI CTAG 2 cut(s) 134, 490
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 3 cut(s) 279, 351, 400
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 2 cut(s) 125, 276
MnlI CCTC 3 cut(s) 32, 204, 329
MseI TTAA 2 cut(s) 164, 480
MslI CAYNNNNRTG 1 cut(s) 187
MspI CCGG 4 cut(s) 47, 98, 225, 434
MspR9I CCNGG 5 cut(s) 59, 221, 226, 345, 454
MvaI CCWGG 4 cut(s) 59, 221, 345, 454
MwoI GCNNNNNNNGC 1 cut(s) 193
NciI CCSGG 1 cut(s) 226
NdeII GATC 1 cut(s) 202
NlaIII CATG 1 cut(s) 325
NlaIV GGNNCC 3 cut(s) 175, 332, 370
PciSI GCTCTTC 1 cut(s) 262
PfeI GAWTC 1 cut(s) 469
PflFI GACNNNGTC 1 cut(s) 135
PfoI TCCNGGA 1 cut(s) 57
PkrI GCNGC 1 cut(s) 45
Psp6I CCWGG 4 cut(s) 57, 219, 343, 452
PspGI CCWGG 4 cut(s) 57, 219, 343, 452
PspN4I GGNNCC 3 cut(s) 175, 332, 370
PspPI GGNCC 2 cut(s) 217, 331
PstI CTGCAG 1 cut(s) 210
PsyI GACNNNGTC 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 187
SapI GCTCTTC 1 cut(s) 262
SaqAI TTAA 2 cut(s) 164, 480
SatI GCNGC 1 cut(s) 44
Sau3AI GATC 1 cut(s) 202
Sau96I GGNCC 2 cut(s) 217, 331
ScrFI CCNGG 5 cut(s) 59, 221, 226, 345, 454
SduI GDGCHC 1 cut(s) 12
SfcI CTRYAG 1 cut(s) 206
SinI GGWCC 2 cut(s) 217, 331
SmiMI CAYNNNNRTG 1 cut(s) 187
SmlI CTYRAG 1 cut(s) 418
SmoI CTYRAG 1 cut(s) 418
Sse9I AATT 2 cut(s) 125, 276
SspMI CTAG 2 cut(s) 134, 490
StyD4I CCNGG 5 cut(s) 57, 219, 224, 343, 452
TaaI ACNGT 1 cut(s) 55
TaqII GACCGA 1 cut(s) 248
TasI AATT 2 cut(s) 125, 276
TfiI GAWTC 1 cut(s) 469
Tru1I TTAA 2 cut(s) 164, 480
Tru9I TTAA 2 cut(s) 164, 480
TseI GCWGC 1 cut(s) 43
TspDTI ATGAA 2 cut(s) 416, 423
TspGWI ACGGA 1 cut(s) 4
Tth111I GACNNNGTC 1 cut(s) 135
VpaK11BI GGWCC 2 cut(s) 217, 331
XcmI CCANNNNNNNNNTGG 1 cut(s) 341
XspI CTAG 2 cut(s) 134, 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.