RLG00000004831

Zinc finger HIT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005386
Physical Location & Seq
Reverse (-)
62865138 .. 62867256
2119 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004831

Sequence Viewer

Length: 1263 bp
ATGGCGGACTCCATAATCACCTCTGAGAAACCCTCCACCTCGTCCCCTCTAGACCCTCCCTCCCGCATCGTCTGCCACGTTTGCCAGAAGCAGTTTTCACAGTACACGTGTCCTCGATGCAACTCGCGCTACTGTTCTCTTCACTGCTACAAGTCTCATAATATTCGATGTACCGAGTCGTTTATGCGAGATAATGTGGTTGGGGAGCTAGGGCAATTGGGGCCGAATGACGAAACGAAGCAGAAGATGATGGACATACTGAAAAGGTTTCACTCTGAAGATGAAGCTGATGGCATGGATGAGGATGAGGATGAGGATGAGGATGTGGATGCTGATTCTGCACTGTCTGAGGAGACTATTAAAAAAGTGCTGTCTGGAGGTGAAGTTAGTTTTGATGATCTATCTGCAGAAGAGAAGAAACTATTCCAAAGAGCTGTTGCTTCTGGAGAACTGAGCAAGATGATTAAGCCTTGGGATCCTTGGTGGTTGAAGCCTTCTGCCAGGACAATATCCTTCAGCAAAGAAGGAACCCAACTTATCCAACCGCTTGCCAAAGAGGACGAACCAATGTCACCAGAAGATGATCAAGAAAGCAGTCAAGCAAGTGAGATTCCACCAGGTCCTGAGACACCACTGCCTCCCCTCAGCAAGCTTAGTTCCGCGACGCCATCACCATTGTTAGCTGTTCATCTGGTCGACATTATATACAGCTACTGCTTTGCTCTTCGTCTCTACAATGGTGGTTGGCAATCAGATGCCACAGGCTCAGCTATGGTCGTGCTCTCCGTGTCATCTGTATTGGGTCAAGGAGGGCAGCCGGAGACTGTCCTGGAAGCTCTGTCTTATTGCTTGGAGCAGACCTGCTCTCCGGCTTTCAGACAGATGGGTGGCTTGCAATTTGGACTGGGTCTTGTAGACGATGTAATAACCCTATTAACATTAGGAACCCCTGCATTGCTGTGCTTGCTTTGTGATCTGCAGAGGATGGTCCAGGCCGGGGAGACCGAGCTGAAATCAGAGAAACCACGAAAATCAATAAGAGCTGAAATTAGGAGTAAGCTGAAGCAGGCCGAAAGGAAAATCTACTTCCTCATGTGTTGGGTCCACGAGCAACCTGGGGAAGCTTGGTCTTCCTTAGGAGCCATCGTAAGGGCAGAGAAAAGTTCAGCTATGAACTATGAAGCTGTCTCTAGGTCTGGCAAACTGGAGAACAAAGCAGAACCCAGGAGCAAAGTGTTGATTCAAGAGATTAAAGATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SHQ1 zf-HIT

Protein Analysis

421

Amino Acids

46.5

Weight (kDa)

4.89

Isoelectric Point (pI)

50.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-HIT PF04438 22 - 51 2e-10 HIT zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 869
AccI GTMKAC 2 cut(s) 696, 915
AccII CGCG 2 cut(s) 127, 662
AciI CCGC 4 cut(s) 5, 64, 545, 660
AclWI GGATC 2 cut(s) 470, 483
AcuI CTGAAG 3 cut(s) 297, 499, 1082
AcvI CACGTG 1 cut(s) 108
AcyI GRCGYC 1 cut(s) 665
AfaI GTAC 2 cut(s) 104, 172
AfiI CCNNNNNNNGG 2 cut(s) 997, 1149
AflIII ACRYGT 2 cut(s) 105, 107
AgsI TTSAA 2 cut(s) 490, 1244
AjnI CCWGG 6 cut(s) 500, 616, 828, 990, 1114, 1223
Alw21I GWGCWC 1 cut(s) 783
Alw26I GTCTC 7 cut(s) 159, 347, 620, 734, 815, 995, 1192
AlwI GGATC 2 cut(s) 470, 483
AlwNI CAGNNNCTG 2 cut(s) 623, 714
AoxI GGCC 3 cut(s) 221, 993, 1068
ApeKI GCWGC 1 cut(s) 814
Asp700I GAANNNNTTC 1 cut(s) 422
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 4 cut(s) 221, 620, 988, 1102
AsuC2I CCSGG 1 cut(s) 997
AsuHPI GGTGA 4 cut(s) 10, 392, 564, 663
AvaII GGWCC 3 cut(s) 620, 988, 1102
AxyI CCTNAGG 1 cut(s) 1135
BamHI GGATCC 1 cut(s) 475
BauI CACGAG 1 cut(s) 1106
BbrPI CACGTG 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 1122
Bbv12I GWGCWC 1 cut(s) 783
BbvCI CCTCAGC 1 cut(s) 644
BbvI GCAGC 1 cut(s) 826
BccI CCATC 6 cut(s) 244, 284, 676, 877, 979, 1151
BciT130I CCWGG 6 cut(s) 502, 618, 830, 992, 1116, 1225
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 1 cut(s) 997
BcoDI GTCTC 7 cut(s) 159, 347, 620, 734, 815, 995, 1192
BfaI CTAG 4 cut(s) 50, 209, 1191, 1261
BfmI CTRYAG 2 cut(s) 405, 977
BfuAI ACCTGC 1 cut(s) 869
BisI GCNGC 1 cut(s) 815
BlpI GCTNAGC 1 cut(s) 766
BlsI GCNGC 1 cut(s) 816
Bme1390I CCNGG 7 cut(s) 502, 618, 830, 992, 997, 1116, 1225
Bme18I GGWCC 3 cut(s) 620, 988, 1102
BmgT120I GGNCC 4 cut(s) 221, 620, 988, 1102
BmiI GGNNCC 6 cut(s) 222, 477, 529, 946, 1103, 1141
BmrFI CCNGG 7 cut(s) 502, 618, 830, 992, 997, 1116, 1225
BmrI ACTGGG 1 cut(s) 914
BmsI GCATC 4 cut(s) 75, 107, 319, 745
BmuI ACTGGG 1 cut(s) 914
BpiI GAAGAC 1 cut(s) 1122
BplI GAGNNNNNCTC 2 cut(s) 17, 49
BpmI CTGGAG 3 cut(s) 396, 465, 1226
Bpu10I CCTNAGC 1 cut(s) 644
Bpu1102I GCTNAGC 1 cut(s) 766
BpuMI CCSGG 1 cut(s) 997
BsaAI YACGTR 1 cut(s) 108
BsaHI GRCGYC 1 cut(s) 665
BsaI GGTCTC 1 cut(s) 995
BsaJI CCNNGG 5 cut(s) 470, 479, 996, 1115, 1223
BsaXI ACNNNNNCTCC 8 cut(s) 44, 74, 369, 399, 850, 880, 1131, 1161
Bsc4I CCNNNNNNNGG 2 cut(s) 997, 1149
Bse1I ACTGG 2 cut(s) 909, 1209
Bse21I CCTNAGG 1 cut(s) 1135
Bse3DI GCAATG 1 cut(s) 953
BseBI CCWGG 6 cut(s) 502, 618, 830, 992, 1116, 1225
BseDI CCNNGG 5 cut(s) 470, 479, 996, 1115, 1223
BseGI GGATG 7 cut(s) 304, 310, 316, 322, 328, 334, 990
BseLI CCNNNNNNNGG 2 cut(s) 997, 1149
BseMI GCAATG 1 cut(s) 953
BseMII CTCAG 6 cut(s) 15, 339, 443, 615, 658, 780
BseNI ACTGG 2 cut(s) 909, 1209
BseRI GAGGAG 1 cut(s) 365
BseXI GCAGC 1 cut(s) 826
BsgI GTGCAG 1 cut(s) 324
Bsh1236I CGCG 2 cut(s) 127, 662
BshFI GGCC 3 cut(s) 223, 995, 1070
BsiHKAI GWGCWC 1 cut(s) 783
BsiSI CCGG 3 cut(s) 818, 869, 996
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 2 cut(s) 997, 1149
BsmAI GTCTC 7 cut(s) 159, 347, 620, 734, 815, 995, 1192
BsmBI CGTCTC 1 cut(s) 734
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 3 cut(s) 223, 995, 1070
Bso31I GGTCTC 1 cut(s) 995
Bsp1286I GDGCHC 1 cut(s) 783
Bsp143I GATC 4 cut(s) 397, 475, 583, 973
Bsp1720I GCTNAGC 1 cut(s) 766
BspACI CCGC 4 cut(s) 5, 64, 545, 660
BspANI GGCC 3 cut(s) 223, 995, 1070
BspCNI CTCAG 6 cut(s) 16, 340, 444, 616, 657, 779
BspFNI CGCG 2 cut(s) 127, 662
BspLI GGNNCC 6 cut(s) 222, 477, 529, 946, 1103, 1141
BspMAI CTGCAG 2 cut(s) 409, 981
BspMI ACCTGC 1 cut(s) 869
BspPI GGATC 2 cut(s) 470, 483
BspQI GCTCTTC 1 cut(s) 729
BspTNI GGTCTC 1 cut(s) 995
BsrDI GCAATG 1 cut(s) 953
BsrI ACTGG 2 cut(s) 909, 1209
BssECI CCNNGG 5 cut(s) 470, 479, 996, 1115, 1223
BssMI GATC 4 cut(s) 397, 475, 583, 973
BssNI GRCGYC 1 cut(s) 665
BssSI CACGAG 1 cut(s) 1106
BssT1I CCWWGG 2 cut(s) 470, 479
Bst2BI CACGAG 1 cut(s) 1106
Bst2UI CCWGG 6 cut(s) 502, 618, 830, 992, 1116, 1225
Bst4CI ACNGT 4 cut(s) 102, 134, 345, 826
Bst6I CTCTTC 3 cut(s) 144, 405, 729
BstACI GRCGYC 1 cut(s) 665
BstAPI GCANNNNNTGC 1 cut(s) 72
BstBAI YACGTR 1 cut(s) 108
BstC8I GCNNGC 5 cut(s) 549, 650, 893, 965, 1068
BstDEI CTNAG 8 cut(s) 24, 348, 452, 624, 644, 653, 766, 1135
BstF5I GGATG 7 cut(s) 304, 310, 316, 322, 328, 334, 990
BstFNI CGCG 2 cut(s) 127, 662
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 4 cut(s) 400, 478, 586, 976
BstMAI GTCTC 7 cut(s) 159, 347, 620, 734, 815, 995, 1192
BstMBI GATC 4 cut(s) 397, 475, 583, 973
BstMWI GCNNNNNNNGC 6 cut(s) 72, 81, 126, 220, 338, 964
BstNI CCWGG 6 cut(s) 502, 618, 830, 992, 1116, 1225
BstSCI CCNGG 7 cut(s) 500, 616, 828, 990, 995, 1114, 1223
BstSFI CTRYAG 2 cut(s) 405, 977
BstUI CGCG 2 cut(s) 127, 662
BstV1I GCAGC 1 cut(s) 826
BstV2I GAAGAC 1 cut(s) 1122
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
Bsu36I CCTNAGG 1 cut(s) 1135
BsuRI GGCC 3 cut(s) 223, 995, 1070
BtsCI GGATG 7 cut(s) 304, 310, 316, 322, 328, 334, 990
BtsI GCAGTG 2 cut(s) 142, 632
BtsIMutI CAGTG 3 cut(s) 142, 341, 632
BveI ACCTGC 1 cut(s) 869
Cac8I GCNNGC 5 cut(s) 549, 650, 893, 965, 1068
CaiI CAGNNNCTG 2 cut(s) 623, 714
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 4 cut(s) 221, 620, 988, 1102
CseI GACGC 1 cut(s) 673
CsiI ACCWGGT 1 cut(s) 616
Csp6I GTAC 2 cut(s) 103, 171
CviAII CATG 2 cut(s) 295, 1093
CviQI GTAC 2 cut(s) 103, 171
DdeI CTNAG 8 cut(s) 24, 348, 452, 624, 644, 653, 766, 1135
DpnI GATC 4 cut(s) 399, 477, 585, 975
DpnII GATC 4 cut(s) 397, 475, 583, 973
Eam1104I CTCTTC 3 cut(s) 144, 405, 729
EarI CTCTTC 3 cut(s) 144, 405, 729
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 470, 479
Eco31I GGTCTC 1 cut(s) 995
Eco32I GATATC 1 cut(s) 1258
Eco47I GGWCC 3 cut(s) 620, 988, 1102
Eco57I CTGAAG 3 cut(s) 297, 499, 1082
Eco72I CACGTG 1 cut(s) 108
Eco81I CCTNAGG 1 cut(s) 1135
EcoO109I RGGNCCY 1 cut(s) 620
EcoRII CCWGG 6 cut(s) 500, 616, 828, 990, 1114, 1223
EcoRV GATATC 1 cut(s) 1258
EcoT14I CCWWGG 2 cut(s) 470, 479
ErhI CCWWGG 2 cut(s) 470, 479
Esp3I CGTCTC 1 cut(s) 734
FaeI CATG 2 cut(s) 298, 1096
FaqI GGGAC 1 cut(s) 28
FatI CATG 2 cut(s) 294, 1092
FauI CCCGC 1 cut(s) 71
FbaI TGATCA 1 cut(s) 583
FblI GTMKAC 2 cut(s) 696, 915
Fnu4HI GCNGC 1 cut(s) 815
FokI GGATG 7 cut(s) 311, 317, 323, 329, 335, 341, 997
Fsp4HI GCNGC 1 cut(s) 815
FspBI CTAG 4 cut(s) 50, 209, 1191, 1261
GlaI GCGC 1 cut(s) 128
GluI GCNGC 1 cut(s) 815
GsuI CTGGAG 3 cut(s) 396, 465, 1226
HaeIII GGCC 3 cut(s) 223, 995, 1070
HapII CCGG 3 cut(s) 818, 869, 996
HgaI GACGC 1 cut(s) 673
HhaI GCGC 1 cut(s) 129
Hin1I GRCGYC 1 cut(s) 665
Hin1II CATG 2 cut(s) 298, 1096
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HindIII AAGCTT 2 cut(s) 650, 1122
HinfI GANTC 5 cut(s) 8, 176, 335, 610, 1240
HpaII CCGG 3 cut(s) 818, 869, 996
HphI GGTGA 4 cut(s) 10, 392, 564, 663
Hpy166II GTNNAC 4 cut(s) 105, 697, 916, 1105
Hpy188I TCNGA 6 cut(s) 25, 277, 349, 754, 878, 1018
Hpy188III TCNNGA 6 cut(s) 50, 375, 444, 587, 623, 1244
Hpy8I GTNNAC 4 cut(s) 105, 697, 916, 1105
Hpy99I CGWCG 1 cut(s) 667
HpyAV CCTTC 3 cut(s) 504, 518, 523
HpyCH4III ACNGT 4 cut(s) 102, 134, 345, 826
HpyCH4IV ACGT 2 cut(s) 78, 107
HpyCH4V TGCA 6 cut(s) 120, 341, 407, 895, 953, 979
HpyF10VI GCNNNNNNNGC 6 cut(s) 72, 81, 126, 220, 338, 964
HpyF3I CTNAG 8 cut(s) 24, 348, 452, 624, 644, 653, 766, 1135
HpySE526I ACGT 2 cut(s) 78, 107
Hsp92I GRCGYC 1 cut(s) 665
Hsp92II CATG 2 cut(s) 298, 1096
HspAI GCGC 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 4 cut(s) 397, 475, 583, 973
LguI GCTCTTC 1 cut(s) 729
LmnI GCTCC 4 cut(s) 205, 853, 1139, 1227
Lsp1109I GCAGC 1 cut(s) 826
LweI GCATC 4 cut(s) 75, 107, 319, 745
MabI ACCWGGT 1 cut(s) 616
MaeI CTAG 4 cut(s) 50, 209, 1191, 1261
MaeII ACGT 2 cut(s) 78, 107
MaeIII GTNAC 1 cut(s) 570
MalI GATC 4 cut(s) 399, 477, 585, 975
MboI GATC 4 cut(s) 397, 475, 583, 973
MboII GAAGA 8 cut(s) 131, 256, 290, 422, 427, 590, 716, 1122
MfeI CAATTG 1 cut(s) 215
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 1 cut(s) 783
MluCI AATT 3 cut(s) 215, 896, 1047
MlyI GAGTC 2 cut(s) 2, 185
MmeI TCCRAC 1 cut(s) 565
MroXI GAANNNNTTC 1 cut(s) 422
MseI TTAA 4 cut(s) 360, 465, 935, 1251
MslI CAYNNNNRTG 1 cut(s) 958
MspI CCGG 3 cut(s) 818, 869, 996
MspR9I CCNGG 7 cut(s) 502, 618, 830, 992, 997, 1116, 1225
MunI CAATTG 1 cut(s) 215
MvaI CCWGG 6 cut(s) 502, 618, 830, 992, 1116, 1225
MvnI CGCG 2 cut(s) 127, 662
MwoI GCNNNNNNNGC 6 cut(s) 72, 81, 126, 220, 338, 964
NciI CCSGG 1 cut(s) 997
NdeII GATC 4 cut(s) 397, 475, 583, 973
NlaIII CATG 2 cut(s) 298, 1096
NlaIV GGNNCC 6 cut(s) 222, 477, 529, 946, 1103, 1141
NmuCI GTSAC 1 cut(s) 570
PciSI GCTCTTC 1 cut(s) 729
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 783
PdmI GAANNNNTTC 1 cut(s) 422
PfeI GAWTC 3 cut(s) 335, 610, 1240
PflFI GACNNNGTC 1 cut(s) 906
PfoI TCCNGGA 1 cut(s) 828
PkrI GCNGC 1 cut(s) 816
PleI GAGTC 2 cut(s) 2, 184
PmaCI CACGTG 1 cut(s) 108
PmlI CACGTG 1 cut(s) 108
PpsI GAGTC 2 cut(s) 2, 184
Ppu21I YACGTR 1 cut(s) 108
PpuMI RGGWCCY 1 cut(s) 620
Psp5II RGGWCCY 1 cut(s) 620
Psp6I CCWGG 6 cut(s) 500, 616, 828, 990, 1114, 1223
PspCI CACGTG 1 cut(s) 108
PspGI CCWGG 6 cut(s) 500, 616, 828, 990, 1114, 1223
PspN4I GGNNCC 6 cut(s) 222, 477, 529, 946, 1103, 1141
PspPI GGNCC 4 cut(s) 221, 620, 988, 1102
PspPPI RGGWCCY 1 cut(s) 620
PstI CTGCAG 2 cut(s) 409, 981
PstNI CAGNNNCTG 2 cut(s) 623, 714
PsuI RGATCY 1 cut(s) 475
PsyI GACNNNGTC 1 cut(s) 906
RsaI GTAC 2 cut(s) 104, 172
RsaNI GTAC 2 cut(s) 103, 171
RseI CAYNNNNRTG 1 cut(s) 958
SalI GTCGAC 1 cut(s) 695
SapI GCTCTTC 1 cut(s) 729
SaqAI TTAA 4 cut(s) 360, 465, 935, 1251
SatI GCNGC 1 cut(s) 815
Sau3AI GATC 4 cut(s) 397, 475, 583, 973
Sau96I GGNCC 4 cut(s) 221, 620, 988, 1102
SchI GAGTC 2 cut(s) 2, 185
ScrFI CCNGG 7 cut(s) 502, 618, 830, 992, 997, 1116, 1225
SduI GDGCHC 1 cut(s) 783
SexAI ACCWGGT 1 cut(s) 616
SfaNI GCATC 4 cut(s) 75, 107, 319, 745
SfcI CTRYAG 2 cut(s) 405, 977
SinI GGWCC 3 cut(s) 620, 988, 1102
SmiMI CAYNNNNRTG 1 cut(s) 958
Sse9I AATT 3 cut(s) 215, 896, 1047
SsiI CCGC 4 cut(s) 5, 64, 545, 660
SspI AATATT 1 cut(s) 163
SspMI CTAG 4 cut(s) 50, 209, 1191, 1261
StyD4I CCNGG 7 cut(s) 500, 616, 828, 990, 995, 1114, 1223
StyI CCWWGG 2 cut(s) 470, 479
TaaI ACNGT 4 cut(s) 102, 134, 345, 826
TaiI ACGT 2 cut(s) 81, 110
TaqI TCGA 3 cut(s) 115, 166, 696
TaqII GACCGA 1 cut(s) 1019
TasI AATT 3 cut(s) 215, 896, 1047
TatI WGTACW 1 cut(s) 102
TfiI GAWTC 3 cut(s) 335, 610, 1240
Tru1I TTAA 4 cut(s) 360, 465, 935, 1251
Tru9I TTAA 4 cut(s) 360, 465, 935, 1251
TscAI CASTG 3 cut(s) 149, 348, 639
TseFI GTSAC 1 cut(s) 570
TseI GCWGC 1 cut(s) 814
Tsp45I GTSAC 1 cut(s) 570
TspDTI ATGAA 4 cut(s) 297, 677, 1187, 1194
TspGWI ACGGA 1 cut(s) 775
TspRI CASTG 3 cut(s) 149, 348, 639
Tth111I GACNNNGTC 1 cut(s) 906
VpaK11BI GGWCC 3 cut(s) 620, 988, 1102
XbaI TCTAGA 1 cut(s) 49
XcmI CCANNNNNNNNNTGG 1 cut(s) 1112
XmiI GTMKAC 2 cut(s) 696, 915
XmnI GAANNNNTTC 1 cut(s) 422
XspI CTAG 4 cut(s) 50, 209, 1191, 1261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.