Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0005386

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG082000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGCGAGATAATGTGGTTGGGGAGCTAGGGCAATTGGGGCCGAATGACGAAACGAAGCAGAAGATGATGGACATACTGAAAAGGTTTCACTCTGAAGATGAAGCTGATGGCATGGATGAGGATGTGGATGCTGATTCTGCACTTTCTGAGGAGACTATTAAAAAAGTGCTGTCTGGAGATGAAGTTAGTTTTGATGATCTATCTGCAGTAGAGAAGAAACTATTCCAAAGAGCTGTTGCTTCTGGAGAACTGAGCAAGATGATTAAGCCTTGGGATCCTTGGTGGTTGAAGCCTTCTGCCAGGACAATATTCTTCAGCAAAGAAGGAACCCAACTTATCCAACCGCTTGCCAAAGAGGACGAACCAATGTCACCAGAAGATGATCAAGAAAGCAGTCAAGCAAGTGAGATTCCACCAGGTCCTGAGACACCACTGCCTCCCCTCAGCAAGCTTAGTTCCGCGAAGCCATCGCCATTCTTAGCTGTTCATCTGGTCGACATTATATACAGCTACTGCTTCGCTCTTCATCTCTACAATGGTGATTGGCAATCAGATGCCACAGGCTCAGCTATGGTAGTGCTCTCCGTGTCATCTGTATTGGGTCAAGGAGGGCAGCCGGAGACTGTCCTGGAAGCTCTATCTTATTGCTTGGAGCAGACCTGCTCTCCGGCTTTCAGACAGATGGGTGGCTTGCAATTTGGACTAGGTCTTGTAGACGATGTAATAACCCTACTAACATTAGGAACCCCTGCATTGCTGTGCTTGCTTTGTGATCTGCAGAGGATGGTCCAGGCCGGGGAGACTGAGCTGAAATCAGAGAAACCACGAAAATCAAGAAGAGCTGAAATTAGGAGTAAGCTGAAGCAGGCCGAAAGGAAAATCTACTTCCTCATGTGTTGGGTCCACGAGCAACCTGGGGAAGCTTGGTCTTCCTTAGGAGCCATCGTAAGGGCAGAGAAGAGTTCAGCTATGAACTATGAAGCTGTCTCAAGGTCTGGCAAACCGGACAACAAAGCAGATCCCAGGAGCAAAGTTTTGATTCAAGAGATCAAAGATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SHQ1 zf-HIT

Protein Analysis

353

Amino Acids

38.99

Weight (kDa)

4.84

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63830
fragaria_vesca	FvH4_4g16080 FvH4_4g16080 FvH4_4g16080 FvH4_4g16080
malus_domestica	MD06G1114600.v1.1
prunus_persica	Prupe.5G127300_v2.0.a1
pyrus_communis	pycom06g10740
rosa_chinensis	RchiOBHm_Chr7g0184121 RchiOBHm_Chr7g0186571
rosa_laevigata	RLG00000004831
rosa_multiflora	Rmu_sc0000645.1_g000018 Rmu_sc0004712.1_g000003 Rmu_sc0025350.1_g000008
rosa_roxburghii	Rroxscaffold_3G00268020 Rroxscaffold_3G00269860
rosa_rugosa	Rorug06G0463200 Rorug06G0475200
rosa_samantha	Rh7AG065800 Rh7AG082600 Rh7BG064400 Rh7BG081700 Rh7CG065000 Rh7CG082000 Rh7DG064600 Rh7DG083000
rosa_wichuraiana	Rw7G005300 Rw7G006900 Rw7G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	668
AccI	GTMKAC	2 cut(s)	495, 714
AccII	CGCG	1 cut(s)	461
AciI	CCGC	2 cut(s)	344, 459
AclWI	GGATC	3 cut(s)	269, 282, 1013
AcuI	CTGAAG	3 cut(s)	114, 298, 881
AfiI	CCNNNNNNNGG	2 cut(s)	796, 948
AgsI	TTSAA	2 cut(s)	289, 1043
AjnI	CCWGG	6 cut(s)	299, 415, 627, 789, 913, 1022
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	5 cut(s)	146, 419, 614, 794, 991
AlwI	GGATC	3 cut(s)	269, 282, 1013
AlwNI	CAGNNNCTG	2 cut(s)	422, 513
AoxI	GGCC	3 cut(s)	38, 792, 867
ApeKI	GCWGC	1 cut(s)	613
Asp700I	GAANNNNTTC	1 cut(s)	221
AspS9I	GGNCC	4 cut(s)	38, 419, 787, 901
AsuC2I	CCSGG	1 cut(s)	796
AsuHPI	GGTGA	2 cut(s)	363, 551
AvaII	GGWCC	3 cut(s)	419, 787, 901
AxyI	CCTNAGG	1 cut(s)	934
BamHI	GGATCC	1 cut(s)	274
BauI	CACGAG	1 cut(s)	905
BbsI	GAAGAC	1 cut(s)	921
Bbv12I	GWGCWC	1 cut(s)	582
BbvCI	CCTCAGC	1 cut(s)	443
BbvI	GCAGC	1 cut(s)	625
BccI	CCATC	6 cut(s)	61, 101, 475, 676, 778, 950
BciT130I	CCWGG	6 cut(s)	301, 417, 629, 791, 915, 1024
BclI	TGATCA	1 cut(s)	382
BcnI	CCSGG	1 cut(s)	796
BcoDI	GTCTC	5 cut(s)	146, 419, 614, 794, 991
BfaI	CTAG	3 cut(s)	26, 704, 1060
BfmI	CTRYAG	2 cut(s)	204, 776
BfuAI	ACCTGC	1 cut(s)	668
BisI	GCNGC	1 cut(s)	614
BlpI	GCTNAGC	1 cut(s)	565
BlsI	GCNGC	1 cut(s)	615
Bme1390I	CCNGG	7 cut(s)	301, 417, 629, 791, 796, 915, 1024
Bme18I	GGWCC	3 cut(s)	419, 787, 901
BmgT120I	GGNCC	4 cut(s)	38, 419, 787, 901
BmiI	GGNNCC	6 cut(s)	39, 276, 328, 745, 902, 940
BmrFI	CCNGG	7 cut(s)	301, 417, 629, 791, 796, 915, 1024
BmsI	GCATC	2 cut(s)	118, 544
BpiI	GAAGAC	1 cut(s)	921
BpmI	CTGGAG	2 cut(s)	195, 264
Bpu10I	CCTNAGC	1 cut(s)	443
Bpu1102I	GCTNAGC	1 cut(s)	565
BpuEI	CTTGAG	1 cut(s)	973
BpuMI	CCSGG	1 cut(s)	796
BsaJI	CCNNGG	5 cut(s)	269, 278, 795, 914, 1022
BsaWI	WCCGGW	1 cut(s)	1003
BsaXI	ACNNNNNCTCC	6 cut(s)	168, 198, 649, 679, 930, 960
Bsc4I	CCNNNNNNNGG	2 cut(s)	796, 948
Bse21I	CCTNAGG	1 cut(s)	934
Bse3DI	GCAATG	1 cut(s)	752
BseBI	CCWGG	6 cut(s)	301, 417, 629, 791, 915, 1024
BseDI	CCNNGG	5 cut(s)	269, 278, 795, 914, 1022
BseGI	GGATG	4 cut(s)	121, 127, 133, 789
BseLI	CCNNNNNNNGG	2 cut(s)	796, 948
BseMI	GCAATG	1 cut(s)	752
BseMII	CTCAG	6 cut(s)	138, 242, 414, 457, 579, 795
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	1 cut(s)	625
BsgI	GTGCAG	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	461
BshFI	GGCC	3 cut(s)	40, 794, 869
BsiHKAI	GWGCWC	1 cut(s)	582
BsiSI	CCGG	4 cut(s)	617, 668, 795, 1004
BslI	CCNNNNNNNGG	2 cut(s)	796, 948
BsmAI	GTCTC	5 cut(s)	146, 419, 614, 794, 991
BsnI	GGCC	3 cut(s)	40, 794, 869
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp143I	GATC	6 cut(s)	196, 274, 382, 772, 1018, 1047
Bsp1720I	GCTNAGC	1 cut(s)	565
BspACI	CCGC	2 cut(s)	344, 459
BspANI	GGCC	3 cut(s)	40, 794, 869
BspCNI	CTCAG	6 cut(s)	139, 243, 415, 456, 578, 796
BspFNI	CGCG	1 cut(s)	461
BspLI	GGNNCC	6 cut(s)	39, 276, 328, 745, 902, 940
BspMAI	CTGCAG	2 cut(s)	208, 780
BspMI	ACCTGC	1 cut(s)	668
BspPI	GGATC	3 cut(s)	269, 282, 1013
BspQI	GCTCTTC	2 cut(s)	528, 832
BsrDI	GCAATG	1 cut(s)	752
BssECI	CCNNGG	5 cut(s)	269, 278, 795, 914, 1022
BssMI	GATC	6 cut(s)	196, 274, 382, 772, 1018, 1047
BssSI	CACGAG	1 cut(s)	905
BssT1I	CCWWGG	2 cut(s)	269, 278
Bst2BI	CACGAG	1 cut(s)	905
Bst2UI	CCWGG	6 cut(s)	301, 417, 629, 791, 915, 1024
Bst4CI	ACNGT	1 cut(s)	625
Bst6I	CTCTTC	3 cut(s)	528, 832, 953
BstC8I	GCNNGC	5 cut(s)	348, 449, 692, 764, 867
BstDEI	CTNAG	9 cut(s)	147, 251, 423, 443, 452, 478, 565, 804, 934
BstF5I	GGATG	4 cut(s)	121, 127, 133, 789
BstFNI	CGCG	1 cut(s)	461
BstKTI	GATC	6 cut(s)	199, 277, 385, 775, 1021, 1050
BstMAI	GTCTC	5 cut(s)	146, 419, 614, 794, 991
BstMBI	GATC	6 cut(s)	196, 274, 382, 772, 1018, 1047
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 137, 763
BstNI	CCWGG	6 cut(s)	301, 417, 629, 791, 915, 1024
BstSCI	CCNGG	7 cut(s)	299, 415, 627, 789, 794, 913, 1022
BstSFI	CTRYAG	2 cut(s)	204, 776
BstUI	CGCG	1 cut(s)	461
BstV1I	GCAGC	1 cut(s)	625
BstV2I	GAAGAC	1 cut(s)	921
BstX2I	RGATCY	2 cut(s)	274, 1018
BstYI	RGATCY	2 cut(s)	274, 1018
Bsu36I	CCTNAGG	1 cut(s)	934
BsuRI	GGCC	3 cut(s)	40, 794, 869
BtgZI	GCGATG	1 cut(s)	453
BtsCI	GGATG	4 cut(s)	121, 127, 133, 789
BtsI	GCAGTG	1 cut(s)	431
BtsIMutI	CAGTG	1 cut(s)	431
BveI	ACCTGC	1 cut(s)	668
Cac8I	GCNNGC	5 cut(s)	348, 449, 692, 764, 867
CaiI	CAGNNNCTG	2 cut(s)	422, 513
Cfr13I	GGNCC	4 cut(s)	38, 419, 787, 901
CsiI	ACCWGGT	1 cut(s)	415
CviAII	CATG	2 cut(s)	112, 892
DdeI	CTNAG	9 cut(s)	147, 251, 423, 443, 452, 478, 565, 804, 934
DpnI	GATC	6 cut(s)	198, 276, 384, 774, 1020, 1049
DpnII	GATC	6 cut(s)	196, 274, 382, 772, 1018, 1047
Eam1104I	CTCTTC	3 cut(s)	528, 832, 953
EarI	CTCTTC	3 cut(s)	528, 832, 953
Eco130I	CCWWGG	2 cut(s)	269, 278
Eco32I	GATATC	1 cut(s)	1057
Eco47I	GGWCC	3 cut(s)	419, 787, 901
Eco57I	CTGAAG	3 cut(s)	114, 298, 881
Eco81I	CCTNAGG	1 cut(s)	934
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRII	CCWGG	6 cut(s)	299, 415, 627, 789, 913, 1022
EcoRV	GATATC	1 cut(s)	1057
EcoT14I	CCWWGG	2 cut(s)	269, 278
ErhI	CCWWGG	2 cut(s)	269, 278
FaeI	CATG	2 cut(s)	115, 895
FaiI	YATR	8 cut(s)	74, 113, 503, 505, 572, 893, 971, 978
FatI	CATG	2 cut(s)	111, 891
FbaI	TGATCA	1 cut(s)	382
FblI	GTMKAC	2 cut(s)	495, 714
Fnu4HI	GCNGC	1 cut(s)	614
FokI	GGATG	4 cut(s)	128, 134, 140, 796
Fsp4HI	GCNGC	1 cut(s)	614
FspBI	CTAG	3 cut(s)	26, 704, 1060
GluI	GCNGC	1 cut(s)	614
GsuI	CTGGAG	2 cut(s)	195, 264
HaeIII	GGCC	3 cut(s)	40, 794, 869
HapII	CCGG	4 cut(s)	617, 668, 795, 1004
Hin1II	CATG	2 cut(s)	115, 895
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HindIII	AAGCTT	2 cut(s)	449, 921
HinfI	GANTC	3 cut(s)	134, 409, 1039
HpaII	CCGG	4 cut(s)	617, 668, 795, 1004
HphI	GGTGA	2 cut(s)	363, 551
Hpy166II	GTNNAC	3 cut(s)	496, 715, 904
Hpy188I	TCNGA	5 cut(s)	94, 148, 553, 677, 817
Hpy188III	TCNNGA	6 cut(s)	174, 243, 386, 422, 834, 1043
Hpy8I	GTNNAC	3 cut(s)	496, 715, 904
HpyAV	CCTTC	2 cut(s)	303, 317
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4V	TGCA	5 cut(s)	140, 206, 694, 752, 778
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 137, 763
HpyF3I	CTNAG	9 cut(s)	147, 251, 423, 443, 452, 478, 565, 804, 934
Hsp92II	CATG	2 cut(s)	115, 895
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	6 cut(s)	196, 274, 382, 772, 1018, 1047
LguI	GCTCTTC	2 cut(s)	528, 832
LmnI	GCTCC	4 cut(s)	22, 652, 938, 1026
Lsp1109I	GCAGC	1 cut(s)	625
LweI	GCATC	2 cut(s)	118, 544
MabI	ACCWGGT	1 cut(s)	415
MaeI	CTAG	3 cut(s)	26, 704, 1060
MaeIII	GTNAC	1 cut(s)	369
MalI	GATC	6 cut(s)	198, 276, 384, 774, 1020, 1049
MboI	GATC	6 cut(s)	196, 274, 382, 772, 1018, 1047
MboII	GAAGA	9 cut(s)	73, 107, 226, 304, 389, 515, 849, 921, 970
MfeI	CAATTG	1 cut(s)	32
MflI	RGATCY	2 cut(s)	274, 1018
MhlI	GDGCHC	1 cut(s)	582
MluCI	AATT	3 cut(s)	32, 695, 846
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	8 cut(s)	112, 142, 349, 447, 452, 602, 774, 899
MroXI	GAANNNNTTC	1 cut(s)	221
MseI	TTAA	2 cut(s)	159, 264
MslI	CAYNNNNRTG	1 cut(s)	757
MspI	CCGG	4 cut(s)	617, 668, 795, 1004
MspR9I	CCNGG	7 cut(s)	301, 417, 629, 791, 796, 915, 1024
MunI	CAATTG	1 cut(s)	32
MvaI	CCWGG	6 cut(s)	301, 417, 629, 791, 915, 1024
MvnI	CGCG	1 cut(s)	461
MwoI	GCNNNNNNNGC	3 cut(s)	37, 137, 763
NciI	CCSGG	1 cut(s)	796
NdeII	GATC	6 cut(s)	196, 274, 382, 772, 1018, 1047
NlaIII	CATG	2 cut(s)	115, 895
NlaIV	GGNNCC	6 cut(s)	39, 276, 328, 745, 902, 940
NmuCI	GTSAC	1 cut(s)	369
PciSI	GCTCTTC	2 cut(s)	528, 832
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	3 cut(s)	134, 409, 1039
PflFI	GACNNNGTC	1 cut(s)	705
PfoI	TCCNGGA	1 cut(s)	627
PkrI	GCNGC	1 cut(s)	615
PpuMI	RGGWCCY	1 cut(s)	419
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	6 cut(s)	299, 415, 627, 789, 913, 1022
PspGI	CCWGG	6 cut(s)	299, 415, 627, 789, 913, 1022
PspN4I	GGNNCC	6 cut(s)	39, 276, 328, 745, 902, 940
PspPI	GGNCC	4 cut(s)	38, 419, 787, 901
PspPPI	RGGWCCY	1 cut(s)	419
PstI	CTGCAG	2 cut(s)	208, 780
PstNI	CAGNNNCTG	2 cut(s)	422, 513
PsuI	RGATCY	2 cut(s)	274, 1018
PsyI	GACNNNGTC	1 cut(s)	705
RseI	CAYNNNNRTG	1 cut(s)	757
SalI	GTCGAC	1 cut(s)	494
SapI	GCTCTTC	2 cut(s)	528, 832
SaqAI	TTAA	2 cut(s)	159, 264
SatI	GCNGC	1 cut(s)	614
Sau3AI	GATC	6 cut(s)	196, 274, 382, 772, 1018, 1047
Sau96I	GGNCC	4 cut(s)	38, 419, 787, 901
ScrFI	CCNGG	7 cut(s)	301, 417, 629, 791, 796, 915, 1024
SduI	GDGCHC	1 cut(s)	582
SexAI	ACCWGGT	1 cut(s)	415
SfaNI	GCATC	2 cut(s)	118, 544
SfcI	CTRYAG	2 cut(s)	204, 776
SinI	GGWCC	3 cut(s)	419, 787, 901
SmiMI	CAYNNNNRTG	1 cut(s)	757
SmlI	CTYRAG	1 cut(s)	988
SmoI	CTYRAG	1 cut(s)	988
Sse9I	AATT	3 cut(s)	32, 695, 846
SsiI	CCGC	2 cut(s)	344, 459
SspI	AATATT	1 cut(s)	309
SspMI	CTAG	3 cut(s)	26, 704, 1060
StyD4I	CCNGG	7 cut(s)	299, 415, 627, 789, 794, 913, 1022
StyI	CCWWGG	2 cut(s)	269, 278
TaaI	ACNGT	1 cut(s)	625
TaqI	TCGA	1 cut(s)	495
TasI	AATT	3 cut(s)	32, 695, 846
TfiI	GAWTC	3 cut(s)	134, 409, 1039
Tru1I	TTAA	2 cut(s)	159, 264
Tru9I	TTAA	2 cut(s)	159, 264
TscAI	CASTG	1 cut(s)	438
TseFI	GTSAC	1 cut(s)	369
TseI	GCWGC	1 cut(s)	613
Tsp45I	GTSAC	1 cut(s)	369
TspDTI	ATGAA	6 cut(s)	114, 195, 476, 515, 986, 993
TspGWI	ACGGA	1 cut(s)	574
TspRI	CASTG	1 cut(s)	438
Tth111I	GACNNNGTC	1 cut(s)	705
VpaK11BI	GGWCC	3 cut(s)	419, 787, 901
XcmI	CCANNNNNNNNNTGG	1 cut(s)	911
XmiI	GTMKAC	2 cut(s)	495, 714
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	3 cut(s)	26, 704, 1060

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.