Rroxscaffold_3G00268020

Zinc finger HIT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0005386
Physical Location & Seq
Reverse (-)
61194898 .. 61197529
2632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00268020.1

Sequence Viewer

Length: 1233 bp
ATGGCGGACTCCATAATCACCTCTGAGAAACCCTCCACCTCGTCCCCTCTCGACCCTCCTTCCCGCATCGTCTGCCACGTTTGCCAGAAGCAGTTTTCACAGTACACGTGTCCTCGATGCAACTCACGCTACTGTTCTCTTCACTGCTACAAGTCTCATAACATTCGATGCACCGAGTCGTTTATGCGAGATAATGTGGTTGGGGAGCTAGGGCAATTGGGGCCGAATGACGAAACGAAGCAGAAGATGATGGACATACTGAAAAGGTTTCACTCTCAAGATGAAGCTGATGGCATGGATGAGGATGTGGATGCTGATTCTGCACTGTCTGAGGAGACTATTAAAAAAGTGCTGTCTGGAGGTGAAGTTAGTTTTGATGATCTATCTGCAGAAGAGAAGAAACTATTCCAAAGAGCTGTTGCTTCTGGAGAACTGAGCAAGATGATTGAGCCTTGGGATCCTTGGTGGTTGAAGCCCTCTGCCAGGACAATATCCTTCAGCAAAGAAGGAACCCAACTTATCCAACCGCTTGCCAAAGAGGACGAACCAATGTCACCAGAAGATGATCAAGAAAGCAGTCTAGCAAGTGAGATTCCACCAGGTCCTGAGACACCACTGCCTCCCCTCAGCAAGCTTAGTTCCGCGAAGCCATCACCATTCTTAGCTGTTCATCTGGTCGACATTATATACAGCTACTGCTTTGCTCTTCGTCTCTACAATGGTGATTGGCAATCAGATGCCACAGGCTCAGCTATGGTAGTGCTCTCCGTGTCATCTGTGTTGGGTCAAGGAGGGCAGCCGGAGACTGTCCTGGAAGCTCTATCTTATTGCTTGGAGCAGACCTGCTCTCCGGCTTTCAGACAGATGGGTGGCTTGCAATTTGGACTAGGTCTTGTAGACGATGTAATAACCCTATTAACATTAGGAACCCCTGCATTGCTGTGCTTGCTTTGTGATCTGCAGAGGATGGTCCAGGCTGGGGAGACCGAGCTGAAATCAGAGAAACCACGAAAATCAAGAAGAGCTGAAATTAGGAGTAAGCTGAAGCAGGCCGAAAGGAAAATCTACTTCCTCATGTGTTGGGTCCACGAGCAGCCTGGGGAAGCTTGGTCTTCCTTGGGAGCCATCGTAAGGGCAGAGAAAAGTTCAGCTATGAACTATGAAGCTGTCTCAAGAGTCGTCTCAGAGAGAACACCTAACAATTCCCGGAACGTCGTCGTCTCATATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SHQ1 zf-HIT

Protein Analysis

410

Amino Acids

45.46

Weight (kDa)

5.08

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-HIT PF04438 22 - 51 2e-10 HIT zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 851
AccI GTMKAC 2 cut(s) 678, 897
AccII CGCG 1 cut(s) 644
AciI CCGC 4 cut(s) 5, 64, 527, 642
AclWI GGATC 2 cut(s) 452, 465
AcuI CTGAAG 2 cut(s) 481, 1064
AcvI CACGTG 1 cut(s) 108
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 3 cut(s) 483, 979, 1131
AflIII ACRYGT 2 cut(s) 105, 107
AgsI TTSAA 1 cut(s) 472
AjnI CCWGG 5 cut(s) 482, 598, 810, 972, 1096
Alw21I GWGCWC 1 cut(s) 765
Alw26I GTCTC 9 cut(s) 159, 329, 602, 716, 797, 977, 1174, 1186, 1225
AlwI GGATC 2 cut(s) 452, 465
AlwNI CAGNNNCTG 2 cut(s) 605, 696
AoxI GGCC 2 cut(s) 221, 1050
ApeKI GCWGC 2 cut(s) 796, 1093
Asp700I GAANNNNTTC 1 cut(s) 404
AspS9I GGNCC 4 cut(s) 221, 602, 970, 1084
AsuC2I CCSGG 1 cut(s) 1207
AsuHPI GGTGA 5 cut(s) 10, 374, 546, 645, 734
AvaII GGWCC 3 cut(s) 602, 970, 1084
BamHI GGATCC 1 cut(s) 457
BauI CACGAG 1 cut(s) 1088
BbrPI CACGTG 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 1104
Bbv12I GWGCWC 1 cut(s) 765
BbvCI CCTCAGC 1 cut(s) 626
BbvI GCAGC 2 cut(s) 808, 1105
BccI CCATC 6 cut(s) 244, 284, 658, 859, 961, 1133
BciT130I CCWGG 5 cut(s) 484, 600, 812, 974, 1098
BclI TGATCA 1 cut(s) 565
BcnI CCSGG 1 cut(s) 1207
BcoDI GTCTC 9 cut(s) 159, 329, 602, 716, 797, 977, 1174, 1186, 1225
BfaI CTAG 3 cut(s) 209, 581, 887
BfmI CTRYAG 2 cut(s) 387, 959
BfuAI ACCTGC 1 cut(s) 851
BisI GCNGC 2 cut(s) 797, 1094
BlpI GCTNAGC 1 cut(s) 748
BlsI GCNGC 2 cut(s) 798, 1095
Bme1390I CCNGG 6 cut(s) 484, 600, 812, 974, 1098, 1207
Bme18I GGWCC 3 cut(s) 602, 970, 1084
BmgT120I GGNCC 4 cut(s) 221, 602, 970, 1084
BmiI GGNNCC 6 cut(s) 222, 459, 511, 928, 1085, 1123
BmrFI CCNGG 6 cut(s) 484, 600, 812, 974, 1098, 1207
BmsI GCATC 5 cut(s) 75, 107, 158, 301, 727
BpiI GAAGAC 1 cut(s) 1104
BplI GAGNNNNNCTC 2 cut(s) 17, 49
BpmI CTGGAG 2 cut(s) 378, 447
Bpu10I CCTNAGC 1 cut(s) 626
Bpu1102I GCTNAGC 1 cut(s) 748
BpuEI CTTGAG 2 cut(s) 261, 1156
BpuMI CCSGG 1 cut(s) 1207
BsaAI YACGTR 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 977
BsaJI CCNNGG 4 cut(s) 452, 461, 1097, 1116
BsaXI ACNNNNNCTCC 6 cut(s) 351, 381, 832, 862, 1113, 1143
Bsc4I CCNNNNNNNGG 3 cut(s) 483, 979, 1131
Bse3DI GCAATG 1 cut(s) 935
BseBI CCWGG 5 cut(s) 484, 600, 812, 974, 1098
BseDI CCNNGG 4 cut(s) 452, 461, 1097, 1116
BseGI GGATG 4 cut(s) 304, 310, 316, 972
BseLI CCNNNNNNNGG 3 cut(s) 483, 979, 1131
BseMI GCAATG 1 cut(s) 935
BseMII CTCAG 7 cut(s) 15, 321, 425, 597, 640, 762, 1197
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 2 cut(s) 808, 1105
BseYI CCCAGC 1 cut(s) 977
BsgI GTGCAG 1 cut(s) 306
Bsh1236I CGCG 1 cut(s) 644
BshFI GGCC 2 cut(s) 223, 1052
BsiHKAI GWGCWC 1 cut(s) 765
BsiSI CCGG 3 cut(s) 800, 851, 1207
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 3 cut(s) 483, 979, 1131
BsmAI GTCTC 9 cut(s) 159, 329, 602, 716, 797, 977, 1174, 1186, 1225
BsmBI CGTCTC 3 cut(s) 716, 1186, 1225
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 2 cut(s) 223, 1052
Bso31I GGTCTC 1 cut(s) 977
Bsp1286I GDGCHC 1 cut(s) 765
Bsp143I GATC 4 cut(s) 379, 457, 565, 955
Bsp1720I GCTNAGC 1 cut(s) 748
BspACI CCGC 4 cut(s) 5, 64, 527, 642
BspANI GGCC 2 cut(s) 223, 1052
BspCNI CTCAG 7 cut(s) 16, 322, 426, 598, 639, 761, 1196
BspFNI CGCG 1 cut(s) 644
BspLI GGNNCC 6 cut(s) 222, 459, 511, 928, 1085, 1123
BspMAI CTGCAG 2 cut(s) 391, 963
BspMI ACCTGC 1 cut(s) 851
BspPI GGATC 2 cut(s) 452, 465
BspQI GCTCTTC 2 cut(s) 711, 1015
BspTNI GGTCTC 1 cut(s) 977
BsrDI GCAATG 1 cut(s) 935
BssECI CCNNGG 4 cut(s) 452, 461, 1097, 1116
BssMI GATC 4 cut(s) 379, 457, 565, 955
BssSI CACGAG 1 cut(s) 1088
BssT1I CCWWGG 3 cut(s) 452, 461, 1116
Bst2BI CACGAG 1 cut(s) 1088
Bst2UI CCWGG 5 cut(s) 484, 600, 812, 974, 1098
Bst4CI ACNGT 4 cut(s) 102, 134, 327, 808
Bst6I CTCTTC 4 cut(s) 144, 387, 711, 1015
BstAPI GCANNNNNTGC 1 cut(s) 72
BstBAI YACGTR 1 cut(s) 108
BstC8I GCNNGC 5 cut(s) 531, 632, 875, 947, 1050
BstDEI CTNAG 9 cut(s) 24, 330, 434, 606, 626, 635, 661, 748, 1183
BstENI CCTNNNNNAGG 1 cut(s) 481
BstF5I GGATG 4 cut(s) 304, 310, 316, 972
BstFNI CGCG 1 cut(s) 644
BstKTI GATC 4 cut(s) 382, 460, 568, 958
BstMAI GTCTC 9 cut(s) 159, 329, 602, 716, 797, 977, 1174, 1186, 1225
BstMBI GATC 4 cut(s) 379, 457, 565, 955
BstMWI GCNNNNNNNGC 6 cut(s) 72, 81, 126, 220, 320, 946
BstNI CCWGG 5 cut(s) 484, 600, 812, 974, 1098
BstSCI CCNGG 6 cut(s) 482, 598, 810, 972, 1096, 1205
BstSFI CTRYAG 2 cut(s) 387, 959
BstUI CGCG 1 cut(s) 644
BstV1I GCAGC 2 cut(s) 808, 1105
BstV2I GAAGAC 1 cut(s) 1104
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
BsuRI GGCC 2 cut(s) 223, 1052
BtsCI GGATG 4 cut(s) 304, 310, 316, 972
BtsI GCAGTG 2 cut(s) 142, 614
BtsIMutI CAGTG 3 cut(s) 142, 323, 614
BveI ACCTGC 1 cut(s) 851
Cac8I GCNNGC 5 cut(s) 531, 632, 875, 947, 1050
CaiI CAGNNNCTG 2 cut(s) 605, 696
Cfr13I GGNCC 4 cut(s) 221, 602, 970, 1084
CsiI ACCWGGT 1 cut(s) 598
Csp6I GTAC 1 cut(s) 103
CviAII CATG 2 cut(s) 295, 1075
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 9 cut(s) 24, 330, 434, 606, 626, 635, 661, 748, 1183
DpnI GATC 4 cut(s) 381, 459, 567, 957
DpnII GATC 4 cut(s) 379, 457, 565, 955
Eam1104I CTCTTC 4 cut(s) 144, 387, 711, 1015
EarI CTCTTC 4 cut(s) 144, 387, 711, 1015
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 3 cut(s) 452, 461, 1116
Eco31I GGTCTC 1 cut(s) 977
Eco47I GGWCC 3 cut(s) 602, 970, 1084
Eco57I CTGAAG 2 cut(s) 481, 1064
Eco72I CACGTG 1 cut(s) 108
EcoNI CCTNNNNNAGG 1 cut(s) 481
EcoO109I RGGNCCY 1 cut(s) 602
EcoRII CCWGG 5 cut(s) 482, 598, 810, 972, 1096
EcoT14I CCWWGG 3 cut(s) 452, 461, 1116
ErhI CCWWGG 3 cut(s) 452, 461, 1116
Esp3I CGTCTC 3 cut(s) 716, 1186, 1225
FaeI CATG 2 cut(s) 298, 1078
FaqI GGGAC 1 cut(s) 28
FatI CATG 2 cut(s) 294, 1074
FauI CCCGC 1 cut(s) 71
FauNDI CATATG 1 cut(s) 1225
FbaI TGATCA 1 cut(s) 565
FblI GTMKAC 2 cut(s) 678, 897
Fnu4HI GCNGC 2 cut(s) 797, 1094
FokI GGATG 4 cut(s) 311, 317, 323, 979
Fsp4HI GCNGC 2 cut(s) 797, 1094
FspBI CTAG 3 cut(s) 209, 581, 887
GluI GCNGC 2 cut(s) 797, 1094
GsaI CCCAGC 1 cut(s) 981
GsuI CTGGAG 2 cut(s) 378, 447
HaeIII GGCC 2 cut(s) 223, 1052
HapII CCGG 3 cut(s) 800, 851, 1207
Hin1II CATG 2 cut(s) 298, 1078
HincII GTYRAC 1 cut(s) 679
HindII GTYRAC 1 cut(s) 679
HindIII AAGCTT 2 cut(s) 632, 1104
HinfI GANTC 5 cut(s) 8, 176, 317, 592, 1176
HpaII CCGG 3 cut(s) 800, 851, 1207
HphI GGTGA 5 cut(s) 10, 374, 546, 645, 734
Hpy166II GTNNAC 4 cut(s) 105, 679, 898, 1087
Hpy188I TCNGA 6 cut(s) 25, 331, 736, 860, 1000, 1186
Hpy188III TCNNGA 8 cut(s) 50, 278, 357, 426, 569, 605, 1017, 1173
Hpy8I GTNNAC 4 cut(s) 105, 679, 898, 1087
Hpy99I CGWCG 2 cut(s) 1217, 1220
HpyAV CCTTC 3 cut(s) 69, 500, 505
HpyCH4III ACNGT 4 cut(s) 102, 134, 327, 808
HpyCH4IV ACGT 3 cut(s) 78, 107, 1212
HpyCH4V TGCA 7 cut(s) 120, 171, 323, 389, 877, 935, 961
HpyF10VI GCNNNNNNNGC 6 cut(s) 72, 81, 126, 220, 320, 946
HpyF3I CTNAG 9 cut(s) 24, 330, 434, 606, 626, 635, 661, 748, 1183
HpySE526I ACGT 3 cut(s) 78, 107, 1212
Hsp92II CATG 2 cut(s) 298, 1078
Ksp22I TGATCA 1 cut(s) 565
Kzo9I GATC 4 cut(s) 379, 457, 565, 955
LguI GCTCTTC 2 cut(s) 711, 1015
LmnI GCTCC 3 cut(s) 205, 835, 1121
Lsp1109I GCAGC 2 cut(s) 808, 1105
LweI GCATC 5 cut(s) 75, 107, 158, 301, 727
MabI ACCWGGT 1 cut(s) 598
MaeI CTAG 3 cut(s) 209, 581, 887
MaeII ACGT 3 cut(s) 78, 107, 1212
MaeIII GTNAC 1 cut(s) 552
MalI GATC 4 cut(s) 381, 459, 567, 957
MboI GATC 4 cut(s) 379, 457, 565, 955
MboII GAAGA 8 cut(s) 131, 256, 404, 409, 572, 698, 1032, 1104
MfeI CAATTG 1 cut(s) 215
MflI RGATCY 1 cut(s) 457
MhlI GDGCHC 1 cut(s) 765
MluCI AATT 4 cut(s) 215, 878, 1029, 1201
MlyI GAGTC 3 cut(s) 2, 185, 1185
MmeI TCCRAC 1 cut(s) 547
MroXI GAANNNNTTC 1 cut(s) 404
MseI TTAA 2 cut(s) 342, 917
MslI CAYNNNNRTG 2 cut(s) 940, 1228
MspI CCGG 3 cut(s) 800, 851, 1207
MspR9I CCNGG 6 cut(s) 484, 600, 812, 974, 1098, 1207
MunI CAATTG 1 cut(s) 215
MvaI CCWGG 5 cut(s) 484, 600, 812, 974, 1098
MvnI CGCG 1 cut(s) 644
MwoI GCNNNNNNNGC 6 cut(s) 72, 81, 126, 220, 320, 946
NciI CCSGG 1 cut(s) 1207
NdeI CATATG 1 cut(s) 1225
NdeII GATC 4 cut(s) 379, 457, 565, 955
NlaIII CATG 2 cut(s) 298, 1078
NlaIV GGNNCC 6 cut(s) 222, 459, 511, 928, 1085, 1123
NmuCI GTSAC 1 cut(s) 552
PciSI GCTCTTC 2 cut(s) 711, 1015
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 404
PfeI GAWTC 2 cut(s) 317, 592
PflFI GACNNNGTC 1 cut(s) 888
PfoI TCCNGGA 2 cut(s) 810, 1205
PkrI GCNGC 2 cut(s) 798, 1095
PleI GAGTC 3 cut(s) 2, 184, 1184
PmaCI CACGTG 1 cut(s) 108
PmlI CACGTG 1 cut(s) 108
PpsI GAGTC 3 cut(s) 2, 184, 1184
Ppu21I YACGTR 1 cut(s) 108
PpuMI RGGWCCY 1 cut(s) 602
Psp5II RGGWCCY 1 cut(s) 602
Psp6I CCWGG 5 cut(s) 482, 598, 810, 972, 1096
PspCI CACGTG 1 cut(s) 108
PspFI CCCAGC 1 cut(s) 977
PspGI CCWGG 5 cut(s) 482, 598, 810, 972, 1096
PspN4I GGNNCC 6 cut(s) 222, 459, 511, 928, 1085, 1123
PspPI GGNCC 4 cut(s) 221, 602, 970, 1084
PspPPI RGGWCCY 1 cut(s) 602
PstI CTGCAG 2 cut(s) 391, 963
PstNI CAGNNNCTG 2 cut(s) 605, 696
PsuI RGATCY 1 cut(s) 457
PsyI GACNNNGTC 1 cut(s) 888
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
RseI CAYNNNNRTG 2 cut(s) 940, 1228
SalI GTCGAC 1 cut(s) 677
SapI GCTCTTC 2 cut(s) 711, 1015
SaqAI TTAA 2 cut(s) 342, 917
SatI GCNGC 2 cut(s) 797, 1094
Sau3AI GATC 4 cut(s) 379, 457, 565, 955
Sau96I GGNCC 4 cut(s) 221, 602, 970, 1084
SchI GAGTC 3 cut(s) 2, 185, 1185
ScrFI CCNGG 6 cut(s) 484, 600, 812, 974, 1098, 1207
SduI GDGCHC 1 cut(s) 765
SexAI ACCWGGT 1 cut(s) 598
SfaNI GCATC 5 cut(s) 75, 107, 158, 301, 727
SfcI CTRYAG 2 cut(s) 387, 959
SinI GGWCC 3 cut(s) 602, 970, 1084
SmiMI CAYNNNNRTG 2 cut(s) 940, 1228
SmlI CTYRAG 2 cut(s) 276, 1171
SmoI CTYRAG 2 cut(s) 276, 1171
Sse9I AATT 4 cut(s) 215, 878, 1029, 1201
SsiI CCGC 4 cut(s) 5, 64, 527, 642
SspMI CTAG 3 cut(s) 209, 581, 887
StyD4I CCNGG 6 cut(s) 482, 598, 810, 972, 1096, 1205
StyI CCWWGG 3 cut(s) 452, 461, 1116
TaaI ACNGT 4 cut(s) 102, 134, 327, 808
TaiI ACGT 3 cut(s) 81, 110, 1215
TaqI TCGA 4 cut(s) 51, 115, 166, 678
TaqII GACCGA 1 cut(s) 1001
TasI AATT 4 cut(s) 215, 878, 1029, 1201
TatI WGTACW 1 cut(s) 102
TfiI GAWTC 2 cut(s) 317, 592
Tru1I TTAA 2 cut(s) 342, 917
Tru9I TTAA 2 cut(s) 342, 917
TscAI CASTG 3 cut(s) 149, 330, 621
TseFI GTSAC 1 cut(s) 552
TseI GCWGC 2 cut(s) 796, 1093
Tsp45I GTSAC 1 cut(s) 552
TspDTI ATGAA 4 cut(s) 297, 659, 1169, 1176
TspGWI ACGGA 1 cut(s) 757
TspRI CASTG 3 cut(s) 149, 330, 621
Tth111I GACNNNGTC 1 cut(s) 888
VpaK11BI GGWCC 3 cut(s) 602, 970, 1084
XagI CCTNNNNNAGG 1 cut(s) 481
XcmI CCANNNNNNNNNTGG 1 cut(s) 1094
XmiI GTMKAC 2 cut(s) 678, 897
XmnI GAANNNNTTC 1 cut(s) 404
XspI CTAG 3 cut(s) 209, 581, 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.