Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001498

Physical Location & Seq

Genomic Coordinates Reverse (-)

25681202 .. 25683641

Gene Structure 2440 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGTCGCACTTCGGAAGGTCAGGTCCACCGGATATCAGCGACACCTACTCACTTCTCGTCCTTAACATCACCTTCCGTACGACTGCTGATGATCTCTATCCTCTATTCGCAAAGTATGGAAAGGTCGTTGATGTGTTTATTCCCAGAGATCGAAGGACTGGTGATTCGCGTGGTTTTGCGTTTGTTCGGTATAAGTATAAAGACGAAGCTCACAAAGCAGTGGAAAGGCTTGATGGAAGAGTTGTTGATGGCAGAGAAATAACTGTTCAGTTTGCGAAATATGGGCCAAATGCTGAAAAAATTTCCAAAGGAAGAGTTGTGGAACCACCGCCGAAGTCACGAAGATCTAGAAGCCGTAGTCCTAGGCGGAGTCGTAGTCCTAGGAGGAGCCGTAGCCCGCCTAGACGTCGTAGTCCCAGAAGAAGCCGCAGTCCTCGTAGGAGGTCCCGAGATGACTATAGGGAAAAAGACTACCGGAAGCGGAGCAGGAGCAGAAGCTATGACAGGCGTGAAAGGCATGAGGAGAAGGATAGAGATCATCGTCGTCGCACTAGGTCTCGTAGTGCCAGCCCAGATGAAAAACGCAGAGTCAGAGGCCGTTATGATAATGAGAGCCGCAGTCACAGTCGTTCCTTGAGTGCATCTCCTGCTCGCCGCAGCCCTAGAAGTTCCTCCCCACAGAAAACCTCTCCTGCTAGAGAAGTTTCTCCTGATAAGCGTAGCAATGAGAGGTCTCCATCTCCTCGTCGCAGCCTCAGCCCAAGAAGCCCTGCTTTGCAAAAGGCCTCTCCTTCTAAGGAGATGTCTCCTGAAAGGCGTAGCAATGAGAGGTCCCCATCTCCTGGTAGCCCTGCTCCTCTGCGCAAAGTTGATGCTGCTTCTCGAAGTCAATCTCCTTATGCTGCGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

303

Amino Acids

35.17

Weight (kDa)

11.54

Isoelectric Point (pI)

138.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	18 - 88	1.4e-20	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64200 AT5G64200
fragaria_vesca	FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_6g21680
malus_domestica	MD08G1182200.v1.1 MD14G1052000.v1.1 MD15G1367900.v1.1
prunus_persica	Prupe.1G516100_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1
pyrus_communis	pycom08g15600 pycom12g04670 pycom14g04330 pycom15g32980
rosa_chinensis	RchiOBHm_Chr3g0478961 RchiOBHm_Chr7g0239081
rosa_laevigata	RLG00000000784 RLG00000023616
rosa_multiflora	Rmu_sc0004605.1_g000002 Rmu_sc0005645.1_g000001 Rmu_sc0012163.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221270 Rroxscaffold_6G00402870
rosa_rugosa	Rorug03G0169300 Rorug03G0169400 Rorug03G0169400 Rorug03G0169400 Rorug03G0169500 Rorug03G0169600 Rorug07G0325500 Rorug07G0325600 Rorug07G0325700 Rorug07G0325800
rosa_samantha	Rh3AG220800 Rh3BG252800 Rh3CG249500 Rh3DG245500 Rh7AG480000 Rh7CG497500 Rh7DG465100
rosa_wichuraiana	Rw3G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	411
AatII	GACGTC	1 cut(s)	409
Acc16I	TGCGCA	1 cut(s)	863
AccB7I	CCANNNNNTGG	1 cut(s)	842
AccII	CGCG	1 cut(s)	169
AciI	CCGC	8 cut(s)	329, 367, 398, 427, 481, 616, 655, 905
AcsI	RAATTY	1 cut(s)	300
AcyI	GRCGYC	1 cut(s)	406
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	1 cut(s)	842
AjnI	CCWGG	1 cut(s)	841
AluBI	AGCT	2 cut(s)	209, 498
AluI	AGCT	2 cut(s)	209, 498
Alw26I	GTCTC	3 cut(s)	561, 738, 810
Ama87I	CYCGRG	1 cut(s)	447
AoxI	GGCC	3 cut(s)	284, 595, 783
ApeKI	GCWGC	4 cut(s)	657, 750, 875, 902
ApoI	RAATTY	1 cut(s)	300
ArsI	GACNNNNNNTTYG	2 cut(s)	148, 180
AspA2I	CCTAGG	2 cut(s)	362, 380
AspLEI	GCGC	1 cut(s)	864
AspS9I	GGNCC	4 cut(s)	23, 284, 444, 831
AsuHPI	GGTGA	2 cut(s)	61, 173
AvaI	CYCGRG	1 cut(s)	447
AvaII	GGWCC	3 cut(s)	23, 444, 831
AvrII	CCTAGG	2 cut(s)	362, 380
BbvCI	CCTCAGC	1 cut(s)	755
BbvI	GCAGC	4 cut(s)	669, 762, 862, 889
BccI	CCATC	4 cut(s)	227, 242, 745, 844
BceAI	ACGGC	3 cut(s)	339, 375, 582
BciT130I	CCWGG	1 cut(s)	843
BcoDI	GTCTC	3 cut(s)	561, 738, 810
BfaI	CTAG	7 cut(s)	348, 363, 381, 402, 552, 663, 696
BfmI	CTRYAG	1 cut(s)	457
BglII	AGATCT	1 cut(s)	344
BisI	GCNGC	7 cut(s)	427, 616, 655, 658, 751, 876, 903
BlnI	CCTAGG	2 cut(s)	362, 380
BlsI	GCNGC	7 cut(s)	428, 617, 656, 659, 752, 877, 904
Bme1390I	CCNGG	1 cut(s)	843
Bme18I	GGWCC	3 cut(s)	23, 444, 831
BmeT110I	CYCGRG	1 cut(s)	447
BmgT120I	GGNCC	4 cut(s)	23, 284, 444, 831
BmiI	GGNNCC	4 cut(s)	324, 389, 446, 833
BmrFI	CCNGG	1 cut(s)	843
BmsI	GCATC	2 cut(s)	650, 862
BplI	GAGNNNNNCTC	2 cut(s)	628, 660
Bpu10I	CCTNAGC	1 cut(s)	755
BpuEI	CTTGAG	1 cut(s)	655
BsaBI	GATNNNNATC	2 cut(s)	96, 534
BsaHI	GRCGYC	1 cut(s)	406
BsaI	GGTCTC	2 cut(s)	561, 738
BsaJI	CCNNGG	2 cut(s)	362, 380
BsaWI	WCCGGW	2 cut(s)	28, 474
BsaXI	ACNNNNNCTCC	4 cut(s)	361, 376, 391, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	842
Bse1I	ACTGG	1 cut(s)	163
Bse3DI	GCAATG	2 cut(s)	730, 829
Bse8I	GATNNNNATC	2 cut(s)	96, 534
BseBI	CCWGG	1 cut(s)	843
BseDI	CCNNGG	2 cut(s)	362, 380
BseJI	GATNNNNATC	2 cut(s)	96, 534
BseLI	CCNNNNNNNGG	1 cut(s)	842
BseMI	GCAATG	2 cut(s)	730, 829
BseMII	CTCAG	1 cut(s)	769
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	4 cut(s)	400, 536, 732, 846
BseXI	GCAGC	4 cut(s)	669, 762, 862, 889
Bsh1236I	CGCG	1 cut(s)	169
BshFI	GGCC	3 cut(s)	286, 597, 785
BsiHKCI	CYCGRG	1 cut(s)	447
BsiSI	CCGG	2 cut(s)	29, 475
BsiWI	CGTACG	1 cut(s)	77
BslFI	GGGAC	3 cut(s)	399, 430, 817
BslI	CCNNNNNNNGG	1 cut(s)	842
BsmAI	GTCTC	3 cut(s)	561, 738, 810
BsmFI	GGGAC	3 cut(s)	399, 430, 817
BsnI	GGCC	3 cut(s)	286, 597, 785
Bso31I	GGTCTC	2 cut(s)	561, 738
BsoBI	CYCGRG	1 cut(s)	447
Bsp143I	GATC	4 cut(s)	91, 148, 344, 535
BspACI	CCGC	8 cut(s)	329, 367, 398, 427, 481, 616, 655, 905
BspANI	GGCC	3 cut(s)	286, 597, 785
BspCNI	CTCAG	1 cut(s)	768
BspFNI	CGCG	1 cut(s)	169
BspLI	GGNNCC	4 cut(s)	324, 389, 446, 833
BspTNI	GGTCTC	2 cut(s)	561, 738
BsrDI	GCAATG	2 cut(s)	730, 829
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	362, 380
BssMI	GATC	4 cut(s)	91, 148, 344, 535
BssNI	GRCGYC	1 cut(s)	406
BssT1I	CCWWGG	2 cut(s)	362, 380
Bst2UI	CCWGG	1 cut(s)	843
Bst4CI	ACNGT	2 cut(s)	265, 626
Bst6I	CTCTTC	2 cut(s)	232, 307
BstACI	GRCGYC	1 cut(s)	406
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstC8I	GCNNGC	3 cut(s)	398, 568, 652
BstDEI	CTNAG	2 cut(s)	755, 795
BstFNI	CGCG	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	864
BstKTI	GATC	4 cut(s)	94, 151, 347, 538
BstMAI	GTCTC	3 cut(s)	561, 738, 810
BstMBI	GATC	4 cut(s)	91, 148, 344, 535
BstMWI	GCNNNNNNNGC	5 cut(s)	215, 514, 647, 756, 765
BstNI	CCWGG	1 cut(s)	843
BstSCI	CCNGG	1 cut(s)	841
BstSFI	CTRYAG	1 cut(s)	457
BstUI	CGCG	1 cut(s)	169
BstV1I	GCAGC	4 cut(s)	669, 762, 862, 889
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
BsuRI	GGCC	3 cut(s)	286, 597, 785
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	3 cut(s)	398, 568, 652
CfoI	GCGC	1 cut(s)	864
Cfr13I	GGNCC	4 cut(s)	23, 284, 444, 831
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	1 cut(s)	518
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	2 cut(s)	755, 795
DpnI	GATC	4 cut(s)	93, 150, 346, 537
DpnII	GATC	4 cut(s)	91, 148, 344, 535
DrdI	GACNNNNNNGTC	1 cut(s)	411
DseDI	GACNNNNNNGTC	1 cut(s)	411
Eam1104I	CTCTTC	2 cut(s)	232, 307
EarI	CTCTTC	2 cut(s)	232, 307
EciI	GGCGGA	1 cut(s)	382
Eco130I	CCWWGG	2 cut(s)	362, 380
Eco147I	AGGCCT	1 cut(s)	785
Eco31I	GGTCTC	2 cut(s)	561, 738
Eco32I	GATATC	1 cut(s)	34
Eco47I	GGWCC	3 cut(s)	23, 444, 831
Eco88I	CYCGRG	1 cut(s)	447
EcoO109I	RGGNCCY	2 cut(s)	444, 831
EcoRII	CCWGG	1 cut(s)	841
EcoRV	GATATC	1 cut(s)	34
EcoT14I	CCWWGG	2 cut(s)	362, 380
ErhI	CCWWGG	2 cut(s)	362, 380
FaeI	CATG	1 cut(s)	521
FaiI	YATR	9 cut(s)	117, 192, 198, 282, 459, 501, 519, 603, 900
FalI	AAGNNNNNCTT	2 cut(s)	757, 789
FaqI	GGGAC	3 cut(s)	399, 430, 817
FatI	CATG	1 cut(s)	517
FauI	CCCGC	1 cut(s)	405
Fnu4HI	GCNGC	7 cut(s)	427, 616, 655, 658, 751, 876, 903
Fsp4HI	GCNGC	7 cut(s)	427, 616, 655, 658, 751, 876, 903
FspBI	CTAG	7 cut(s)	348, 363, 381, 402, 552, 663, 696
FspI	TGCGCA	1 cut(s)	863
GlaI	GCGC	1 cut(s)	863
GluI	GCNGC	7 cut(s)	427, 616, 655, 658, 751, 876, 903
HaeIII	GGCC	3 cut(s)	286, 597, 785
HapII	CCGG	2 cut(s)	29, 475
HhaI	GCGC	1 cut(s)	864
Hin1I	GRCGYC	1 cut(s)	406
Hin1II	CATG	1 cut(s)	521
Hin6I	GCGC	1 cut(s)	862
HinP1I	GCGC	1 cut(s)	862
HinfI	GANTC	3 cut(s)	164, 370, 588
HpaII	CCGG	2 cut(s)	29, 475
HphI	GGTGA	2 cut(s)	61, 173
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	2 cut(s)	14, 593
Hpy188III	TCNNGA	6 cut(s)	339, 348, 447, 710, 809, 882
Hpy8I	GTNNAC	1 cut(s)	26
Hpy99I	CGWCG	4 cut(s)	411, 546, 549, 750
HpyAV	CCTTC	5 cut(s)	9, 82, 147, 520, 801
HpyCH4III	ACNGT	2 cut(s)	265, 626
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	2 cut(s)	641, 778
HpyF10VI	GCNNNNNNNGC	5 cut(s)	215, 514, 647, 756, 765
HpyF3I	CTNAG	2 cut(s)	755, 795
HpySE526I	ACGT	1 cut(s)	406
Hsp92I	GRCGYC	1 cut(s)	406
Hsp92II	CATG	1 cut(s)	521
HspAI	GCGC	1 cut(s)	862
Kzo9I	GATC	4 cut(s)	91, 148, 344, 535
LmnI	GCTCC	4 cut(s)	387, 483, 489, 859
Lsp1109I	GCAGC	4 cut(s)	669, 762, 862, 889
LweI	GCATC	2 cut(s)	650, 862
MaeI	CTAG	7 cut(s)	348, 363, 381, 402, 552, 663, 696
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	2 cut(s)	336, 620
MalI	GATC	4 cut(s)	93, 150, 346, 537
MboI	GATC	4 cut(s)	91, 148, 344, 535
MboII	GAAGA	4 cut(s)	249, 324, 354, 432
MflI	RGATCY	1 cut(s)	344
MluCI	AATT	1 cut(s)	300
MlyI	GAGTC	2 cut(s)	379, 597
MseI	TTAA	1 cut(s)	63
MspI	CCGG	2 cut(s)	29, 475
MspR9I	CCNGG	1 cut(s)	843
MvaI	CCWGG	1 cut(s)	843
MvnI	CGCG	1 cut(s)	169
MwoI	GCNNNNNNNGC	5 cut(s)	215, 514, 647, 756, 765
NdeII	GATC	4 cut(s)	91, 148, 344, 535
NlaIII	CATG	1 cut(s)	521
NlaIV	GGNNCC	4 cut(s)	324, 389, 446, 833
NmuCI	GTSAC	2 cut(s)	336, 620
NsbI	TGCGCA	1 cut(s)	863
PceI	AGGCCT	1 cut(s)	785
PfeI	GAWTC	1 cut(s)	164
Pfl23II	CGTACG	1 cut(s)	77
PflMI	CCANNNNNTGG	1 cut(s)	842
PkrI	GCNGC	7 cut(s)	428, 617, 656, 659, 752, 877, 904
PleI	GAGTC	2 cut(s)	378, 596
PpsI	GAGTC	2 cut(s)	378, 596
PpuMI	RGGWCCY	2 cut(s)	444, 831
Psp5II	RGGWCCY	2 cut(s)	444, 831
Psp6I	CCWGG	1 cut(s)	841
PspGI	CCWGG	1 cut(s)	841
PspLI	CGTACG	1 cut(s)	77
PspN4I	GGNNCC	4 cut(s)	324, 389, 446, 833
PspPI	GGNCC	4 cut(s)	23, 284, 444, 831
PspPPI	RGGWCCY	2 cut(s)	444, 831
PsuI	RGATCY	1 cut(s)	344
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	7 cut(s)	427, 616, 655, 658, 751, 876, 903
Sau3AI	GATC	4 cut(s)	91, 148, 344, 535
Sau96I	GGNCC	4 cut(s)	23, 284, 444, 831
SchI	GAGTC	2 cut(s)	379, 597
ScrFI	CCNGG	1 cut(s)	843
SfaNI	GCATC	2 cut(s)	650, 862
SfcI	CTRYAG	1 cut(s)	457
SinI	GGWCC	3 cut(s)	23, 444, 831
SmlI	CTYRAG	1 cut(s)	634
SmoI	CTYRAG	1 cut(s)	634
Sse9I	AATT	1 cut(s)	300
SseBI	AGGCCT	1 cut(s)	785
SsiI	CCGC	8 cut(s)	329, 367, 398, 427, 481, 616, 655, 905
SspMI	CTAG	7 cut(s)	348, 363, 381, 402, 552, 663, 696
StuI	AGGCCT	1 cut(s)	785
StyD4I	CCNGG	1 cut(s)	841
StyI	CCWWGG	2 cut(s)	362, 380
TaaI	ACNGT	2 cut(s)	265, 626
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	2 cut(s)	151, 883
TasI	AATT	1 cut(s)	300
TauI	GCSGC	3 cut(s)	429, 618, 657
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	2 cut(s)	336, 620
TseI	GCWGC	4 cut(s)	657, 750, 875, 902
Tsp45I	GTSAC	2 cut(s)	336, 620
TspDTI	ATGAA	1 cut(s)	591
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	1 cut(s)	225
Van91I	CCANNNNNTGG	1 cut(s)	842
VpaK11BI	GGWCC	3 cut(s)	23, 444, 831
XapI	RAATTY	1 cut(s)	300
XbaI	TCTAGA	1 cut(s)	347
XmaJI	CCTAGG	2 cut(s)	362, 380
XspI	CTAG	7 cut(s)	348, 363, 381, 402, 552, 663, 696
ZraI	GACGTC	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.