Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001498

Physical Location & Seq

Genomic Coordinates Forward (+)

14350539 .. 14353427

Gene Structure 2889 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0169600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCTCTCTTTCTCTTCTTCCTCCTAGCTCTTTTGGTACCTTCAAGCAATGCTGGCTGGCCAGCATCACCTGGCTACTGGCCAAGTTCTAAATTCAGGTCTATGAGCTTTTATAAAGGGTTTAGAACCCTCTGGGGTCCTCAGCATCAAAGCTTAGACCAAAATGCATTAACAATCTGGCTTGACAGAACCACAGGAAGTGGATTCAAGTCGGTTCGACCATTTAGATCCGGTTACTTTGGTTCCTCCATTAAGCTTCAACCTGGTTATACTGCAGGAGTTATAACAGCTTTCTATCTTTCAAACAGTGAAGCTCATCCAGGGTATCATGATGAAGTGGACATCGAGTTTTTGGGGACTACATTTGGGAAGCCCTATACTTTACAGACCAATGTTTACATCAGAGGAAGTGGAGATGGAAAAATCATTGGAAGAGAGATGAAGTTTCATTTGTGGTTTGATCCCACCCAACATTTTCATCACTATGCTATATTATGGAGTCCTAAGGAGATTATATTTTTGGTGGATGATGTGCCCATAAGGAGGTACCAAAGAAAGAGTGCTGCAACATTTCCCTTAAGACCAATGTGGCTGTATGGTTCAATATGGGATGCCTCATCTTGGGCTACTGAAGATGGAAAATACAAAGCAGATTATAGATACCAACCCTTTGTAGCAAAGTTTACCAATTTTAAAGCCGGTGGTTGCTCAGCCTATTCCCCTGCCTGGTGCCACCCAGTCTCCGCCTCTCCATTCCGGTCAGGTGGGTTGACTCGACAACAGTACCGGGTCATGAAATGGGTTCAAGCCAACCATATGGTGTATGACTATTGCAGGGATTTCAAGAGGGACCATTCCCTAACACCTGAATGTTGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

293

Amino Acids

33.71

Weight (kDa)

9.43

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	38 - 220	4.7e-55	Glycosyl hydrolases family 16
XET_C	PF06955	255 - 291	1.8e-13	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64200 AT5G64200
fragaria_vesca	FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_6g21680
malus_domestica	MD08G1182200.v1.1 MD14G1052000.v1.1 MD15G1367900.v1.1
prunus_persica	Prupe.1G516100_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1
pyrus_communis	pycom08g15600 pycom12g04670 pycom14g04330 pycom15g32980
rosa_chinensis	RchiOBHm_Chr3g0478961 RchiOBHm_Chr7g0239081
rosa_laevigata	RLG00000000784 RLG00000023616
rosa_multiflora	Rmu_sc0004605.1_g000002 Rmu_sc0005645.1_g000001 Rmu_sc0012163.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221270 Rroxscaffold_6G00402870
rosa_rugosa	Rorug03G0169300 Rorug03G0169400 Rorug03G0169400 Rorug03G0169400 Rorug03G0169500 Rorug03G0169600 Rorug07G0325500 Rorug07G0325600 Rorug07G0325700 Rorug07G0325800
rosa_samantha	Rh3AG220800 Rh3BG252800 Rh3CG249500 Rh3DG245500 Rh7AG480000 Rh7CG497500 Rh7DG465100
rosa_wichuraiana	Rw3G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	114, 284
Acc65I	GGTACC	2 cut(s)	37, 546
AccB1I	GGYRCC	3 cut(s)	37, 546, 729
AciI	CCGC	1 cut(s)	744
AclWI	GGATC	2 cut(s)	222, 455
AcoI	YGGCCR	2 cut(s)	59, 80
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	651
AfaI	GTAC	3 cut(s)	39, 548, 785
AfiI	CCNNNNNNNGG	3 cut(s)	543, 621, 726
AflII	CTTAAG	1 cut(s)	577
AgsI	TTSAA	7 cut(s)	45, 208, 260, 303, 603, 806, 844
AjnI	CCWGG	4 cut(s)	70, 262, 319, 725
AluBI	AGCT	6 cut(s)	29, 108, 153, 256, 290, 314
AluI	AGCT	6 cut(s)	29, 108, 153, 256, 290, 314
Alw26I	GTCTC	1 cut(s)	745
AlwI	GGATC	2 cut(s)	222, 455
AoxI	GGCC	2 cut(s)	59, 80
ApeKI	GCWGC	1 cut(s)	563
ApoI	RAATTY	1 cut(s)	92
Asp718I	GGTACC	2 cut(s)	37, 546
AspS9I	GGNCC	2 cut(s)	137, 850
AsuC2I	CCSGG	1 cut(s)	788
AsuHPI	GGTGA	1 cut(s)	60
AvaII	GGWCC	2 cut(s)	137, 850
AxyI	CCTNAGG	1 cut(s)	504
BaeGI	GKGCMC	1 cut(s)	537
BaeI	ACNNNNGTAYC	2 cut(s)	767, 800
BalI	TGGCCA	2 cut(s)	61, 82
BanI	GGYRCC	3 cut(s)	37, 546, 729
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	550
BccI	CCATC	2 cut(s)	410, 629
BciT130I	CCWGG	4 cut(s)	72, 264, 321, 727
BcnI	CCSGG	1 cut(s)	788
BcoDI	GTCTC	1 cut(s)	745
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	273
BfrI	CTTAAG	1 cut(s)	577
BisI	GCNGC	1 cut(s)	564
BlpI	GCTNAGC	1 cut(s)	709
BlsI	GCNGC	1 cut(s)	565
Bme1390I	CCNGG	5 cut(s)	72, 264, 321, 727, 788
Bme18I	GGWCC	2 cut(s)	137, 850
BmgT120I	GGNCC	2 cut(s)	137, 850
BmiI	GGNNCC	6 cut(s)	39, 138, 244, 548, 731, 851
BmrFI	CCNGG	5 cut(s)	72, 264, 321, 727, 788
BmrI	ACTGGG	1 cut(s)	731
BmsI	GCATC	3 cut(s)	74, 154, 601
BmuI	ACTGGG	1 cut(s)	731
Bpu10I	CCTNAGC	1 cut(s)	141
Bpu1102I	GCTNAGC	1 cut(s)	709
BpuMI	CCSGG	1 cut(s)	788
BsaJI	CCNNGG	1 cut(s)	320
BsaWI	WCCGGW	2 cut(s)	230, 756
BsaXI	ACNNNNNCTCC	2 cut(s)	725, 755
Bsc4I	CCNNNNNNNGG	3 cut(s)	543, 621, 726
Bse118I	RCCGGY	1 cut(s)	698
Bse1I	ACTGG	2 cut(s)	83, 737
Bse21I	CCTNAGG	1 cut(s)	504
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	4 cut(s)	72, 264, 321, 727
BseDI	CCNNGG	1 cut(s)	320
BseGI	GGATG	3 cut(s)	316, 532, 616
BseLI	CCNNNNNNNGG	3 cut(s)	543, 621, 726
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	155, 723
BseNI	ACTGG	2 cut(s)	83, 737
BseSI	GKGCMC	1 cut(s)	537
BseXI	GCAGC	1 cut(s)	550
BshFI	GGCC	2 cut(s)	61, 82
BshNI	GGYRCC	3 cut(s)	37, 546, 729
BsiSI	CCGG	4 cut(s)	231, 699, 757, 787
BslFI	GGGAC	2 cut(s)	370, 863
BslI	CCNNNNNNNGG	3 cut(s)	543, 621, 726
BsmAI	GTCTC	1 cut(s)	745
BsmFI	GGGAC	2 cut(s)	370, 863
BsnI	GGCC	2 cut(s)	61, 82
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp143I	GATC	2 cut(s)	227, 460
Bsp1720I	GCTNAGC	1 cut(s)	709
BspACI	CCGC	1 cut(s)	744
BspANI	GGCC	2 cut(s)	61, 82
BspCNI	CTCAG	2 cut(s)	154, 722
BspHI	TCATGA	2 cut(s)	328, 792
BspLI	GGNNCC	6 cut(s)	39, 138, 244, 548, 731, 851
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	2 cut(s)	222, 455
BspT107I	GGYRCC	3 cut(s)	37, 546, 729
BspTI	CTTAAG	1 cut(s)	577
BsrDI	GCAATG	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	698
BsrI	ACTGG	2 cut(s)	83, 737
BssAI	RCCGGY	1 cut(s)	698
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	2 cut(s)	227, 460
Bst2UI	CCWGG	4 cut(s)	72, 264, 321, 727
Bst4CI	ACNGT	2 cut(s)	308, 783
Bst6I	CTCTTC	2 cut(s)	20, 427
BstAFI	CTTAAG	1 cut(s)	577
BstC8I	GCNNGC	3 cut(s)	55, 59, 63
BstDEI	CTNAG	4 cut(s)	141, 154, 504, 709
BstF5I	GGATG	3 cut(s)	316, 532, 616
BstKTI	GATC	2 cut(s)	230, 463
BstMAI	GTCTC	1 cut(s)	745
BstMBI	GATC	2 cut(s)	227, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNI	CCWGG	4 cut(s)	72, 264, 321, 727
BstSCI	CCNGG	5 cut(s)	70, 262, 319, 725, 786
BstSFI	CTRYAG	1 cut(s)	273
BstSLI	GKGCMC	1 cut(s)	537
BstV1I	GCAGC	1 cut(s)	550
BstX2I	RGATCY	1 cut(s)	227
BstXI	CCANNNNNNTGG	1 cut(s)	817
BstYI	RGATCY	1 cut(s)	227
Bsu36I	CCTNAGG	1 cut(s)	504
BsuRI	GGCC	2 cut(s)	61, 82
BtsCI	GGATG	3 cut(s)	316, 532, 616
BtsIMutI	CAGTG	1 cut(s)	313
Cac8I	GCNNGC	3 cut(s)	55, 59, 63
CciI	TCATGA	2 cut(s)	328, 792
Cfr10I	RCCGGY	1 cut(s)	698
Cfr13I	GGNCC	2 cut(s)	137, 850
CsiI	ACCWGGT	1 cut(s)	262
Csp6I	GTAC	3 cut(s)	38, 547, 784
CviAII	CATG	2 cut(s)	329, 793
CviQI	GTAC	3 cut(s)	38, 547, 784
DdeI	CTNAG	4 cut(s)	141, 154, 504, 709
DpnI	GATC	2 cut(s)	229, 462
DpnII	GATC	2 cut(s)	227, 460
DraI	TTTAAA	1 cut(s)	694
EaeI	YGGCCR	2 cut(s)	59, 80
Eam1104I	CTCTTC	2 cut(s)	20, 427
EarI	CTCTTC	2 cut(s)	20, 427
EciI	GGCGGA	1 cut(s)	733
Eco47I	GGWCC	2 cut(s)	137, 850
Eco57I	CTGAAG	1 cut(s)	651
Eco81I	CCTNAGG	1 cut(s)	504
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRII	CCWGG	4 cut(s)	70, 262, 319, 725
EcoT22I	ATGCAT	1 cut(s)	169
FaeI	CATG	2 cut(s)	332, 796
FaqI	GGGAC	2 cut(s)	370, 863
FatI	CATG	2 cut(s)	328, 792
FauNDI	CATATG	1 cut(s)	816
Fnu4HI	GCNGC	1 cut(s)	564
FokI	GGATG	3 cut(s)	303, 539, 623
Fsp4HI	GCNGC	1 cut(s)	564
FspBI	CTAG	1 cut(s)	26
GluI	GCNGC	1 cut(s)	564
HaeIII	GGCC	2 cut(s)	61, 82
HapII	CCGG	4 cut(s)	231, 699, 757, 787
Hin1II	CATG	2 cut(s)	332, 796
HincII	GTYRAC	1 cut(s)	771
HindII	GTYRAC	1 cut(s)	771
HindIII	AAGCTT	2 cut(s)	151, 254
HinfI	GANTC	3 cut(s)	204, 499, 772
HpaII	CCGG	4 cut(s)	231, 699, 757, 787
HphI	GGTGA	1 cut(s)	60
Hpy166II	GTNNAC	4 cut(s)	340, 397, 684, 771
Hpy188I	TCNGA	1 cut(s)	404
Hpy188III	TCNNGA	3 cut(s)	329, 793, 844
Hpy8I	GTNNAC	4 cut(s)	340, 397, 684, 771
HpyAV	CCTTC	1 cut(s)	51
HpyCH4III	ACNGT	2 cut(s)	308, 783
HpyCH4V	TGCA	4 cut(s)	167, 275, 566, 834
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	4 cut(s)	141, 154, 504, 709
Hsp92II	CATG	2 cut(s)	332, 796
KpnI	GGTACC	2 cut(s)	41, 550
Kzo9I	GATC	2 cut(s)	227, 460
Lsp1109I	GCAGC	1 cut(s)	550
LweI	GCATC	3 cut(s)	74, 154, 601
MabI	ACCWGGT	1 cut(s)	262
MaeI	CTAG	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	2 cut(s)	229, 462
MboI	GATC	2 cut(s)	227, 460
MboII	GAAGA	4 cut(s)	7, 10, 444, 644
MflI	RGATCY	1 cut(s)	227
MhlI	GDGCHC	1 cut(s)	537
MlsI	TGGCCA	2 cut(s)	61, 82
MluCI	AATT	2 cut(s)	92, 688
MluNI	TGGCCA	2 cut(s)	61, 82
MlyI	GAGTC	2 cut(s)	508, 766
MnlI	CCTC	9 cut(s)	32, 140, 150, 256, 398, 537, 625, 757, 840
Mox20I	TGGCCA	2 cut(s)	61, 82
Mph1103I	ATGCAT	1 cut(s)	169
MscI	TGGCCA	2 cut(s)	61, 82
MseI	TTAA	5 cut(s)	170, 252, 578, 693, 880
MslI	CAYNNNNRTG	2 cut(s)	483, 868
Msp20I	TGGCCA	2 cut(s)	61, 82
MspCI	CTTAAG	1 cut(s)	577
MspI	CCGG	4 cut(s)	231, 699, 757, 787
MspR9I	CCNGG	5 cut(s)	72, 264, 321, 727, 788
MvaI	CCWGG	4 cut(s)	72, 264, 321, 727
MwoI	GCNNNNNNNGC	1 cut(s)	54
NciI	CCSGG	1 cut(s)	788
NdeI	CATATG	1 cut(s)	816
NdeII	GATC	2 cut(s)	227, 460
NlaIII	CATG	2 cut(s)	332, 796
NlaIV	GGNNCC	6 cut(s)	39, 138, 244, 548, 731, 851
NsiI	ATGCAT	1 cut(s)	169
PagI	TCATGA	2 cut(s)	328, 792
PfeI	GAWTC	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	565
PleI	GAGTC	2 cut(s)	507, 766
PpsI	GAGTC	2 cut(s)	507, 766
PpuMI	RGGWCCY	1 cut(s)	137
PsiI	TTATAA	2 cut(s)	114, 284
Psp5II	RGGWCCY	1 cut(s)	137
Psp6I	CCWGG	4 cut(s)	70, 262, 319, 725
PspGI	CCWGG	4 cut(s)	70, 262, 319, 725
PspN4I	GGNNCC	6 cut(s)	39, 138, 244, 548, 731, 851
PspPI	GGNCC	2 cut(s)	137, 850
PspPPI	RGGWCCY	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	227
RsaI	GTAC	3 cut(s)	39, 548, 785
RsaNI	GTAC	3 cut(s)	38, 547, 784
RseI	CAYNNNNRTG	2 cut(s)	483, 868
SaqAI	TTAA	5 cut(s)	170, 252, 578, 693, 880
SatI	GCNGC	1 cut(s)	564
Sau3AI	GATC	2 cut(s)	227, 460
Sau96I	GGNCC	2 cut(s)	137, 850
SchI	GAGTC	2 cut(s)	508, 766
ScrFI	CCNGG	5 cut(s)	72, 264, 321, 727, 788
SduI	GDGCHC	1 cut(s)	537
SexAI	ACCWGGT	1 cut(s)	262
SfaNI	GCATC	3 cut(s)	74, 154, 601
SfcI	CTRYAG	1 cut(s)	273
SinI	GGWCC	2 cut(s)	137, 850
SmiMI	CAYNNNNRTG	2 cut(s)	483, 868
SmlI	CTYRAG	1 cut(s)	577
SmoI	CTYRAG	1 cut(s)	577
Sse9I	AATT	2 cut(s)	92, 688
SsiI	CCGC	1 cut(s)	744
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	5 cut(s)	70, 262, 319, 725, 786
TaaI	ACNGT	2 cut(s)	308, 783
TaqI	TCGA	3 cut(s)	217, 345, 775
TasI	AATT	2 cut(s)	92, 688
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	5 cut(s)	170, 252, 578, 693, 880
Tru9I	TTAA	5 cut(s)	170, 252, 578, 693, 880
TscAI	CASTG	1 cut(s)	313
TseI	GCWGC	1 cut(s)	563
TspDTI	ATGAA	5 cut(s)	348, 437, 455, 467, 809
TspRI	CASTG	1 cut(s)	313
Vha464I	CTTAAG	1 cut(s)	577
VpaK11BI	GGWCC	2 cut(s)	137, 850
XapI	RAATTY	1 cut(s)	92
XspI	CTAG	1 cut(s)	26
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.