Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001498

Physical Location & Seq

Genomic Coordinates Reverse (-)

15349146 .. 15351540

Gene Structure 2395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g15600.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTCGCACTTCGGTCGATCCGGACCTCCGGACATCAGAGAGACCTACTCCCTCCTCGTCCTCAACATCACTTTCCGAACCACTGCGGACGACCTTTTCCCTCTCTTCGACAAGTACGGAAAGGTCGTCGATGTCTTCATTCCCCGAGACCGGAGAACTGGCGATTCCCGCGGATTCGCTTTCGTTCGGTATAAGTATCAGGATGAGGCGCAGAAGGCTGTGGAGAAACTTGATGGGAGAGTTGTCGATGGTAGAGAGATTATGGTTCAGTTTGCTAAATACGGCCCCAATGCGGAGCGAATCCACAAGGGTAGGGTAAGTGAATCAACTTCTAAGCTCAAATCAAGGTCCCGAAGCCGTAGCCGGAGCCCTCATCCTAGGTATCGAGATGAATATAAGGAAAAGGATTACGGAAGTCGCAGTCGAAGTAGGGATAAATATAGTCGTGACAGGCACCATAGGAGTGAAAGAGAGCATCGCTACAGAAGTAGGAGCCGCAGTGCAAGTCCTGATAATCGTAAGAGGGGCAGATATGATGATGAGCGGCGGAGTCGAAGCCGGTCATATGGAAGTGCCTCTCCTGTTCGGAATAGTCCCAAGTCTCGCAGGAGCCCCTCTCCTCGTAGGAGCTCATCTCCTTGCAGGAGCCCTTCTCCTCGCATGAGTACATCTCCTCGTACGACACCTTCTAGGGTTGAGAATGTTCATGGACGCAACCGCAAGGAACGCTCTCCTACCCCCAAAGATGTTTCACCACATGGACGACGTGATGATTCTCCAAGTCTTTCCCCTCGTAAATCTGATGCTGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

272

Amino Acids

31.58

Weight (kDa)

10.93

Isoelectric Point (pI)

91.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64200 AT5G64200
fragaria_vesca	FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_6g21680
malus_domestica	MD08G1182200.v1.1 MD14G1052000.v1.1 MD15G1367900.v1.1
prunus_persica	Prupe.1G516100_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1
pyrus_communis	pycom08g15600 pycom12g04670 pycom14g04330 pycom15g32980
rosa_chinensis	RchiOBHm_Chr3g0478961 RchiOBHm_Chr7g0239081
rosa_laevigata	RLG00000000784 RLG00000023616
rosa_multiflora	Rmu_sc0004605.1_g000002 Rmu_sc0005645.1_g000001 Rmu_sc0012163.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221270 Rroxscaffold_6G00402870
rosa_rugosa	Rorug03G0169300 Rorug03G0169400 Rorug03G0169400 Rorug03G0169400 Rorug03G0169500 Rorug03G0169600 Rorug07G0325500 Rorug07G0325600 Rorug07G0325700 Rorug07G0325800
rosa_samantha	Rh3AG220800 Rh3BG252800 Rh3CG249500 Rh3DG245500 Rh7AG480000 Rh7CG497500 Rh7DG465100
rosa_wichuraiana	Rw3G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	453
AccBSI	CCGCTC	1 cut(s)	544
AccII	CGCG	1 cut(s)	171
AccIII	TCCGGA	2 cut(s)	20, 28
AciI	CCGC	8 cut(s)	86, 169, 171, 293, 496, 544, 547, 718
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	3 cut(s)	116, 667, 679
AfiI	CCNNNNNNNGG	2 cut(s)	150, 292
AjiI	CACGTC	1 cut(s)	767
AluBI	AGCT	2 cut(s)	337, 630
AluI	AGCT	2 cut(s)	337, 630
Alw21I	GWGCWC	1 cut(s)	632
Alw26I	GTCTC	3 cut(s)	35, 141, 606
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	144
Aor13HI	TCCGGA	2 cut(s)	20, 28
AoxI	GGCC	1 cut(s)	283
AspA2I	CCTAGG	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	3 cut(s)	23, 284, 348
AsuHPI	GGTGA	1 cut(s)	744
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	2 cut(s)	23, 348
AvrII	CCTAGG	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	453
BanII	GRGCYC	4 cut(s)	371, 614, 632, 650
BarI	GAAGNNNNNNTAC	2 cut(s)	670, 702
BbsI	GAAGAC	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	632
BccI	CCATC	2 cut(s)	227, 242
BceAI	ACGGC	2 cut(s)	298, 342
BcgI	CGANNNNNNTGC	1 cut(s)	30
BcoDI	GTCTC	3 cut(s)	35, 141, 606
BfaI	CTAG	2 cut(s)	378, 690
BfmI	CTRYAG	1 cut(s)	481
BisI	GCNGC	2 cut(s)	496, 545
BlnI	CCTAGG	1 cut(s)	377
BlsI	GCNGC	2 cut(s)	497, 546
Bme18I	GGWCC	2 cut(s)	23, 348
BmeT110I	CYCGRG	1 cut(s)	144
BmgBI	CACGTC	1 cut(s)	767
BmgT120I	GGNCC	3 cut(s)	23, 284, 348
BmiI	GGNNCC	7 cut(s)	286, 350, 368, 455, 494, 611, 647
BmsI	GCATC	2 cut(s)	484, 793
BpiI	GAAGAC	1 cut(s)	127
BsaI	GGTCTC	2 cut(s)	35, 141
BsaJI	CCNNGG	2 cut(s)	169, 377
BsaWI	WCCGGW	3 cut(s)	20, 28, 150
BsaXI	ACNNNNNCTCC	2 cut(s)	484, 514
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 292
Bse118I	RCCGGY	1 cut(s)	558
Bse1I	ACTGG	1 cut(s)	163
BseAI	TCCGGA	2 cut(s)	20, 28
BseDI	CCNNGG	2 cut(s)	169, 377
BseGI	GGATG	2 cut(s)	208, 373
BseLI	CCNNNNNNNGG	2 cut(s)	150, 292
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	4 cut(s)	44, 609, 645, 663
Bsh1236I	CGCG	1 cut(s)	171
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	1 cut(s)	285
BshNI	GGYRCC	1 cut(s)	453
BsiEI	CGRYCG	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	632
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	5 cut(s)	21, 29, 151, 364, 559
BsiWI	CGTACG	1 cut(s)	677
BslFI	GGGAC	2 cut(s)	334, 579
BslI	CCNNNNNNNGG	2 cut(s)	150, 292
BsmAI	GTCTC	3 cut(s)	35, 141, 606
BsmFI	GGGAC	2 cut(s)	334, 579
BsnI	GGCC	1 cut(s)	285
Bso31I	GGTCTC	2 cut(s)	35, 141
BsoBI	CYCGRG	1 cut(s)	144
Bsp1286I	GDGCHC	4 cut(s)	371, 614, 632, 650
Bsp13I	TCCGGA	2 cut(s)	20, 28
Bsp143I	GATC	1 cut(s)	17
BspACI	CCGC	8 cut(s)	86, 169, 171, 293, 496, 544, 547, 718
BspANI	GGCC	1 cut(s)	285
BspEI	TCCGGA	2 cut(s)	20, 28
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	7 cut(s)	286, 350, 368, 455, 494, 611, 647
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	453
BspTNI	GGTCTC	2 cut(s)	35, 141
BsrBI	CCGCTC	1 cut(s)	544
BsrFI	RCCGGY	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	163
BssAI	RCCGGY	1 cut(s)	558
BssECI	CCNNGG	2 cut(s)	169, 377
BssMI	GATC	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	377
Bst6I	CTCTTC	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	333
BstDSI	CCRYGG	1 cut(s)	169
BstF5I	GGATG	2 cut(s)	208, 373
BstFNI	CGCG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	3 cut(s)	35, 141, 606
BstMBI	GATC	1 cut(s)	17
BstMCI	CGRYCG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	3 cut(s)	168, 215, 726
BstSFI	CTRYAG	1 cut(s)	481
BstUI	CGCG	1 cut(s)	171
BstV2I	GAAGAC	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	285
BtgI	CCRYGG	1 cut(s)	169
BtgZI	GCGATG	1 cut(s)	461
BtrI	CACGTC	1 cut(s)	767
BtsCI	GGATG	2 cut(s)	208, 373
BtsI	GCAGTG	2 cut(s)	81, 505
BtsIMutI	CAGTG	2 cut(s)	81, 505
CfoI	GCGC	1 cut(s)	211
Cfr10I	RCCGGY	1 cut(s)	558
Cfr13I	GGNCC	3 cut(s)	23, 284, 348
Cfr42I	CCGCGG	1 cut(s)	172
CseI	GACGC	1 cut(s)	720
Csp6I	GTAC	3 cut(s)	115, 666, 678
CviAII	CATG	3 cut(s)	661, 707, 758
CviQI	GTAC	3 cut(s)	115, 666, 678
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
EciI	GGCGGA	1 cut(s)	562
Ecl136II	GAGCTC	1 cut(s)	630
Eco130I	CCWWGG	1 cut(s)	377
Eco24I	GRGCYC	4 cut(s)	371, 614, 632, 650
Eco31I	GGTCTC	2 cut(s)	35, 141
Eco47I	GGWCC	2 cut(s)	23, 348
Eco53kI	GAGCTC	1 cut(s)	630
Eco88I	CYCGRG	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	630
EcoO109I	RGGNCCY	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	377
EcoT38I	GRGCYC	4 cut(s)	371, 614, 632, 650
ErhI	CCWWGG	1 cut(s)	377
FaeI	CATG	3 cut(s)	664, 710, 761
FaqI	GGGAC	2 cut(s)	334, 579
FatI	CATG	3 cut(s)	660, 706, 757
FauI	CCCGC	1 cut(s)	176
FauNDI	CATATG	1 cut(s)	565
Fnu4HI	GCNGC	2 cut(s)	496, 545
FokI	GGATG	2 cut(s)	215, 360
FriOI	GRGCYC	4 cut(s)	371, 614, 632, 650
Fsp4HI	GCNGC	2 cut(s)	496, 545
FspBI	CTAG	2 cut(s)	378, 690
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	2 cut(s)	496, 545
HaeIII	GGCC	1 cut(s)	285
HapII	CCGG	5 cut(s)	21, 29, 151, 364, 559
HgaI	GACGC	1 cut(s)	720
HhaI	GCGC	1 cut(s)	211
Hin1II	CATG	3 cut(s)	664, 710, 761
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HinfI	GANTC	6 cut(s)	164, 174, 300, 323, 550, 773
HpaII	CCGG	5 cut(s)	21, 29, 151, 364, 559
HphI	GGTGA	1 cut(s)	744
Hpy188I	TCNGA	4 cut(s)	38, 77, 588, 802
Hpy188III	TCNNGA	7 cut(s)	21, 29, 200, 351, 386, 446, 509
Hpy99I	CGWCG	2 cut(s)	131, 768
HpyAV	CCTTC	3 cut(s)	208, 660, 696
HpyCH4IV	ACGT	1 cut(s)	766
HpyCH4V	TGCA	2 cut(s)	503, 642
HpyF10VI	GCNNNNNNNGC	3 cut(s)	168, 215, 726
HpyF3I	CTNAG	1 cut(s)	333
HpySE526I	ACGT	1 cut(s)	766
Hsp92II	CATG	3 cut(s)	664, 710, 761
HspAI	GCGC	1 cut(s)	209
Kpn2I	TCCGGA	2 cut(s)	20, 28
KspI	CCGCGG	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	17
LmnI	GCTCC	6 cut(s)	295, 366, 492, 609, 627, 645
LweI	GCATC	2 cut(s)	484, 793
MaeI	CTAG	2 cut(s)	378, 690
MaeII	ACGT	1 cut(s)	766
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	1 cut(s)	19
MbiI	CCGCTC	1 cut(s)	544
MboI	GATC	1 cut(s)	17
MboII	GAAGA	2 cut(s)	97, 127
MhlI	GDGCHC	4 cut(s)	371, 614, 632, 650
MlyI	GAGTC	1 cut(s)	559
MroI	TCCGGA	2 cut(s)	20, 28
MslI	CAYNNNNRTG	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	171
MspI	CCGG	5 cut(s)	21, 29, 151, 364, 559
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	3 cut(s)	168, 215, 726
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	3 cut(s)	664, 710, 761
NlaIV	GGNNCC	7 cut(s)	286, 350, 368, 455, 494, 611, 647
NmuCI	GTSAC	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	5 cut(s)	164, 174, 300, 323, 773
Pfl23II	CGTACG	1 cut(s)	677
PkrI	GCNGC	2 cut(s)	497, 546
PleI	GAGTC	1 cut(s)	558
PpsI	GAGTC	1 cut(s)	558
PpuMI	RGGWCCY	1 cut(s)	348
Psp124BI	GAGCTC	1 cut(s)	632
Psp5II	RGGWCCY	1 cut(s)	348
PspLI	CGTACG	1 cut(s)	677
PspN4I	GGNNCC	7 cut(s)	286, 350, 368, 455, 494, 611, 647
PspPI	GGNCC	3 cut(s)	23, 284, 348
PspPPI	RGGWCCY	1 cut(s)	348
RsaI	GTAC	3 cut(s)	116, 667, 679
RsaNI	GTAC	3 cut(s)	115, 666, 678
RseI	CAYNNNNRTG	1 cut(s)	462
SacI	GAGCTC	1 cut(s)	632
SacII	CCGCGG	1 cut(s)	172
SatI	GCNGC	2 cut(s)	496, 545
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	3 cut(s)	23, 284, 348
SchI	GAGTC	1 cut(s)	559
SduI	GDGCHC	4 cut(s)	371, 614, 632, 650
SfaNI	GCATC	2 cut(s)	484, 793
SfcI	CTRYAG	1 cut(s)	481
Sfr303I	CCGCGG	1 cut(s)	172
SgrBI	CCGCGG	1 cut(s)	172
SinI	GGWCC	2 cut(s)	23, 348
SmiMI	CAYNNNNRTG	1 cut(s)	462
SsiI	CCGC	8 cut(s)	86, 169, 171, 293, 496, 544, 547, 718
SspMI	CTAG	2 cut(s)	378, 690
SstI	GAGCTC	1 cut(s)	632
StyI	CCWWGG	1 cut(s)	377
TaiI	ACGT	1 cut(s)	769
TaqI	TCGA	7 cut(s)	16, 108, 129, 246, 385, 424, 553
TatI	WGTACW	1 cut(s)	665
TauI	GCSGC	2 cut(s)	498, 547
TfiI	GAWTC	5 cut(s)	164, 174, 300, 323, 773
TscAI	CASTG	2 cut(s)	88, 505
TseFI	GTSAC	1 cut(s)	446
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	3 cut(s)	127, 405, 695
TspGWI	ACGGA	2 cut(s)	132, 426
TspRI	CASTG	2 cut(s)	88, 505
VpaK11BI	GGWCC	2 cut(s)	23, 348
XmaJI	CCTAGG	1 cut(s)	377
XspI	CTAG	2 cut(s)	378, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.