Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001498

Physical Location & Seq

Genomic Coordinates Forward (+)

23002499 .. 23005679

Gene Structure 3181 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G019860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTCTCACTTCGGAAGGTCTGGCCCTCCGGACATCACCGATACCTACTCTCTCCTCGTCCTCAACATCACCTTCCGGACGAGTGCGGATGATCTGTTTCCGCTTTTCGATAAGTACGGCAAGGTCGTCGACATCTTCATCCCCAGAGACCGAAGGACTGGCGAGTCCAGGGGATTTGCTTTTGTGCGATACAAATATGCAGATGAGGCACAGAAAGCAGTTGAGAGGCTCGATGGAAGAGTTGTTGATGGTCGCGAAATAACTGTTCAGTTTGCAAAATATGGGCCTAATGCAGAGAAGATTCATAAAGGAAGGATTACTGAAACTCTATCAAAATCGACGCACAGGTCAAGAAGTCGCAGTCCTCGGAGAAGGTACCGTGATGACTATAGAGATCGGGACTACAGGAGGAGAAGTCGCAGTAGGAGTTGGGATAGGTATGAGCGTGACAGATACCGCCATGGTAGGGACAGATACCGCCATAGACGAAGCAGGAGCCCTAGTGCCAGTCCTGATTACTACAGGAGCAGGGGAAGAACACGCTATGATGATGATGATGATTATGATAGGCGGAGGCCGAGTCCGATTCGAAGCCGTTCTTTTGATAGTGCATCCCCTGCTCGGCGTAGCCTTACACCTCAAAGGAGCCTTTCTCCGTTAAGCAGAAGCTGCAGTGTCAGCCCTTATGGACATGGTCGTGATGGACGATCGCCTAATTCTCGAAGTGTTTCACCACGAGGTCGTCCTGCTGATTCTCGAAGTCCATCACCTCGCCATTCAGATGATTTGTGTTCGGGAAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

268

Amino Acids

31.47

Weight (kDa)

10.74

Isoelectric Point (pI)

90.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	18 - 88	2.3e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64200 AT5G64200
fragaria_vesca	FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_6g21680
malus_domestica	MD08G1182200.v1.1 MD14G1052000.v1.1 MD15G1367900.v1.1
prunus_persica	Prupe.1G516100_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1
pyrus_communis	pycom08g15600 pycom12g04670 pycom14g04330 pycom15g32980
rosa_chinensis	RchiOBHm_Chr3g0478961 RchiOBHm_Chr7g0239081
rosa_laevigata	RLG00000000784 RLG00000023616
rosa_multiflora	Rmu_sc0004605.1_g000002 Rmu_sc0005645.1_g000001 Rmu_sc0012163.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221270 Rroxscaffold_6G00402870
rosa_rugosa	Rorug03G0169300 Rorug03G0169400 Rorug03G0169400 Rorug03G0169400 Rorug03G0169500 Rorug03G0169600 Rorug07G0325500 Rorug07G0325600 Rorug07G0325700 Rorug07G0325800
rosa_samantha	Rh3AG220800 Rh3BG252800 Rh3CG249500 Rh3DG245500 Rh7AG480000 Rh7CG497500 Rh7DG465100
rosa_wichuraiana	Rw3G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	163, 346
Acc65I	GGTACC	1 cut(s)	375
AccB1I	GGYRCC	1 cut(s)	375
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	1 cut(s)	255
AccIII	TCCGGA	2 cut(s)	28, 75
AciI	CCGC	5 cut(s)	86, 101, 457, 478, 571
AfaI	GTAC	2 cut(s)	116, 377
AfiI	CCNNNNNNNGG	2 cut(s)	466, 621
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	1 cut(s)	669
AluI	AGCT	1 cut(s)	669
Alw26I	GTCTC	2 cut(s)	9, 141
AlwNI	CAGNNNCTG	1 cut(s)	669
Aor13HI	TCCGGA	2 cut(s)	28, 75
AoxI	GGCC	3 cut(s)	22, 284, 575
ApeKI	GCWGC	1 cut(s)	669
Asp700I	GAANNNNTTC	2 cut(s)	595, 727
Asp718I	GGTACC	1 cut(s)	375
AspS9I	GGNCC	2 cut(s)	23, 284
AsuHPI	GGTGA	4 cut(s)	28, 61, 723, 759
AsuII	TTCGAA	1 cut(s)	589
BanI	GGYRCC	1 cut(s)	375
BanII	GRGCYC	1 cut(s)	500
BauI	CACGAG	1 cut(s)	735
BbvI	GCAGC	1 cut(s)	656
BccI	CCATC	4 cut(s)	227, 242, 695, 772
BceAI	ACGGC	2 cut(s)	133, 579
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BciT130I	CCWGG	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	9, 141
BfaI	CTAG	1 cut(s)	501
BfmI	CTRYAG	4 cut(s)	388, 403, 520, 670
BisI	GCNGC	1 cut(s)	670
BlsI	GCNGC	1 cut(s)	671
Bme1390I	CCNGG	1 cut(s)	169
BmgT120I	GGNCC	2 cut(s)	23, 284
BmiI	GGNNCC	3 cut(s)	377, 497, 647
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	620
BplI	GAGNNNNNCTC	2 cut(s)	637, 669
Bpu14I	TTCGAA	1 cut(s)	589
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	3 cut(s)	168, 365, 460
BsaWI	WCCGGW	2 cut(s)	28, 75
BsaXI	ACNNNNNCTCC	6 cut(s)	400, 430, 487, 517, 565, 595
Bsc4I	CCNNNNNNNGG	2 cut(s)	466, 621
Bse1I	ACTGG	2 cut(s)	163, 507
BseAI	TCCGGA	2 cut(s)	28, 75
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	3 cut(s)	168, 365, 460
BseGI	GGATG	3 cut(s)	94, 138, 611
BseLI	CCNNNNNNNGG	2 cut(s)	466, 621
BseNI	ACTGG	2 cut(s)	163, 507
BseRI	GAGGAG	2 cut(s)	44, 424
BseXI	GCAGC	1 cut(s)	656
Bsh1236I	CGCG	1 cut(s)	255
Bsh1285I	CGRYCG	1 cut(s)	710
BshFI	GGCC	3 cut(s)	24, 286, 577
BshNI	GGYRCC	1 cut(s)	375
BsiEI	CGRYCG	1 cut(s)	710
BsiSI	CCGG	2 cut(s)	29, 76
BslFI	GGGAC	2 cut(s)	413, 482
BslI	CCNNNNNNNGG	2 cut(s)	466, 621
BsmAI	GTCTC	2 cut(s)	9, 141
BsmFI	GGGAC	2 cut(s)	413, 482
BsnI	GGCC	3 cut(s)	24, 286, 577
Bso31I	GGTCTC	1 cut(s)	141
Bsp119I	TTCGAA	1 cut(s)	589
Bsp1286I	GDGCHC	1 cut(s)	500
Bsp13I	TCCGGA	2 cut(s)	28, 75
Bsp143I	GATC	3 cut(s)	91, 394, 707
Bsp19I	CCATGG	1 cut(s)	460
Bsp68I	TCGCGA	1 cut(s)	255
BspACI	CCGC	5 cut(s)	86, 101, 457, 478, 571
BspANI	GGCC	3 cut(s)	24, 286, 577
BspEI	TCCGGA	2 cut(s)	28, 75
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	3 cut(s)	377, 497, 647
BspMAI	CTGCAG	1 cut(s)	674
BspT104I	TTCGAA	1 cut(s)	589
BspT107I	GGYRCC	1 cut(s)	375
BspTNI	GGTCTC	1 cut(s)	141
BsrI	ACTGG	2 cut(s)	163, 507
BssECI	CCNNGG	3 cut(s)	168, 365, 460
BssMI	GATC	3 cut(s)	91, 394, 707
BssSI	CACGAG	1 cut(s)	735
BssT1I	CCWWGG	1 cut(s)	460
Bst2BI	CACGAG	1 cut(s)	735
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	2 cut(s)	265, 380
Bst6I	CTCTTC	1 cut(s)	232
BstAPI	GCANNNNNTGC	2 cut(s)	617, 669
BstBI	TTCGAA	1 cut(s)	589
BstDSI	CCRYGG	1 cut(s)	460
BstF5I	GGATG	3 cut(s)	94, 138, 611
BstFNI	CGCG	1 cut(s)	255
BstKTI	GATC	3 cut(s)	94, 397, 710
BstMAI	GTCTC	2 cut(s)	9, 141
BstMBI	GATC	3 cut(s)	91, 394, 707
BstMCI	CGRYCG	1 cut(s)	710
BstMWI	GCNNNNNNNGC	5 cut(s)	206, 215, 617, 669, 678
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	167
BstSFI	CTRYAG	4 cut(s)	388, 403, 520, 670
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	656
BsuRI	GGCC	3 cut(s)	24, 286, 577
BtgI	CCRYGG	1 cut(s)	460
BtsCI	GGATG	3 cut(s)	94, 138, 611
BtsI	GCAGTG	1 cut(s)	679
BtsIMutI	CAGTG	1 cut(s)	679
BtuMI	TCGCGA	1 cut(s)	255
CaiI	CAGNNNCTG	1 cut(s)	669
Cfr13I	GGNCC	2 cut(s)	23, 284
CseI	GACGC	1 cut(s)	349
Csp6I	GTAC	2 cut(s)	115, 376
CviAII	CATG	2 cut(s)	461, 692
CviQI	GTAC	2 cut(s)	115, 376
DpnI	GATC	3 cut(s)	93, 396, 709
DpnII	GATC	3 cut(s)	91, 394, 707
DrdI	GACNNNNNNGTC	2 cut(s)	163, 346
DseDI	GACNNNNNNGTC	2 cut(s)	163, 346
Eam1104I	CTCTTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	232
EciI	GGCGGA	1 cut(s)	586
Eco130I	CCWWGG	1 cut(s)	460
Eco24I	GRGCYC	1 cut(s)	500
Eco31I	GGTCTC	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	500
ErhI	CCWWGG	1 cut(s)	460
FaeI	CATG	2 cut(s)	464, 695
FalI	AAGNNNNNCTT	2 cut(s)	583, 615
FaqI	GGGAC	2 cut(s)	413, 482
FatI	CATG	2 cut(s)	460, 691
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	670
FokI	GGATG	3 cut(s)	101, 125, 598
FriOI	GRGCYC	1 cut(s)	500
Fsp4HI	GCNGC	1 cut(s)	670
FspBI	CTAG	1 cut(s)	501
GluI	GCNGC	1 cut(s)	670
HaeIII	GGCC	3 cut(s)	24, 286, 577
HapII	CCGG	2 cut(s)	29, 76
HgaI	GACGC	1 cut(s)	349
Hin1II	CATG	2 cut(s)	464, 695
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	5 cut(s)	164, 301, 580, 586, 752
HpaII	CCGG	2 cut(s)	29, 76
HphI	GGTGA	4 cut(s)	28, 61, 723, 759
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	4 cut(s)	14, 369, 585, 781
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	2 cut(s)	131, 343
HpyAV	CCTTC	5 cut(s)	9, 82, 147, 306, 366
HpyCH4III	ACNGT	2 cut(s)	265, 380
HpyCH4V	TGCA	5 cut(s)	200, 275, 293, 611, 672
HpyF10VI	GCNNNNNNNGC	5 cut(s)	206, 215, 617, 669, 678
Hsp92II	CATG	2 cut(s)	464, 695
Kpn2I	TCCGGA	2 cut(s)	28, 75
KpnI	GGTACC	1 cut(s)	379
Kzo9I	GATC	3 cut(s)	91, 394, 707
LmnI	GCTCC	3 cut(s)	495, 525, 645
Lsp1109I	GCAGC	1 cut(s)	656
LweI	GCATC	1 cut(s)	620
MaeI	CTAG	1 cut(s)	501
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	3 cut(s)	93, 396, 709
MboI	GATC	3 cut(s)	91, 394, 707
MboII	GAAGA	4 cut(s)	127, 249, 310, 546
MhlI	GDGCHC	1 cut(s)	500
MluCI	AATT	1 cut(s)	715
MlyI	GAGTC	2 cut(s)	173, 589
MroI	TCCGGA	2 cut(s)	28, 75
MroXI	GAANNNNTTC	2 cut(s)	595, 727
MseI	TTAA	1 cut(s)	659
MslI	CAYNNNNRTG	2 cut(s)	696, 780
MspI	CCGG	2 cut(s)	29, 76
MspR9I	CCNGG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	169
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	5 cut(s)	206, 215, 617, 669, 678
NcoI	CCATGG	1 cut(s)	460
NdeII	GATC	3 cut(s)	91, 394, 707
NlaIII	CATG	2 cut(s)	464, 695
NlaIV	GGNNCC	3 cut(s)	377, 497, 647
NmeAIII	GCCGAG	2 cut(s)	601, 603
NmuCI	GTSAC	1 cut(s)	446
NruI	TCGCGA	1 cut(s)	255
NspV	TTCGAA	1 cut(s)	589
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 703
PdmI	GAANNNNTTC	2 cut(s)	595, 727
PfeI	GAWTC	3 cut(s)	301, 586, 752
PflFI	GACNNNGTC	1 cut(s)	693
PkrI	GCNGC	1 cut(s)	671
Ple19I	CGATCG	1 cut(s)	710
PleI	GAGTC	2 cut(s)	172, 588
PpsI	GAGTC	2 cut(s)	172, 588
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	3 cut(s)	377, 497, 647
PspPI	GGNCC	2 cut(s)	23, 284
PstI	CTGCAG	1 cut(s)	674
PstNI	CAGNNNCTG	1 cut(s)	669
PsyI	GACNNNGTC	1 cut(s)	693
PvuI	CGATCG	1 cut(s)	710
RruI	TCGCGA	1 cut(s)	255
RsaI	GTAC	2 cut(s)	116, 377
RsaNI	GTAC	2 cut(s)	115, 376
RseI	CAYNNNNRTG	2 cut(s)	696, 780
SalI	GTCGAC	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	659
SatI	GCNGC	1 cut(s)	670
Sau3AI	GATC	3 cut(s)	91, 394, 707
Sau96I	GGNCC	2 cut(s)	23, 284
SchI	GAGTC	2 cut(s)	173, 589
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	500
SfaNI	GCATC	1 cut(s)	620
SfcI	CTRYAG	4 cut(s)	388, 403, 520, 670
SfuI	TTCGAA	1 cut(s)	589
SmiMI	CAYNNNNRTG	2 cut(s)	696, 780
Sse9I	AATT	1 cut(s)	715
SsiI	CCGC	5 cut(s)	86, 101, 457, 478, 571
SspMI	CTAG	1 cut(s)	501
StyD4I	CCNGG	1 cut(s)	167
StyI	CCWWGG	1 cut(s)	460
TaaI	ACNGT	2 cut(s)	265, 380
TaqI	TCGA	7 cut(s)	108, 129, 231, 338, 589, 721, 757
TaqII	GACCGA	1 cut(s)	165
TasI	AATT	1 cut(s)	715
TfiI	GAWTC	3 cut(s)	301, 586, 752
Tru1I	TTAA	1 cut(s)	659
Tru9I	TTAA	1 cut(s)	659
TscAI	CASTG	1 cut(s)	679
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	1 cut(s)	669
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	2 cut(s)	127, 293
TspGWI	ACGGA	1 cut(s)	645
TspRI	CASTG	1 cut(s)	679
Tth111I	GACNNNGTC	1 cut(s)	693
XmiI	GTMKAC	1 cut(s)	129
XmnI	GAANNNNTTC	2 cut(s)	595, 727
XspI	CTAG	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.