Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001498

Physical Location & Seq

Genomic Coordinates Forward (+)

24616916 .. 24620924

Gene Structure 4009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44409

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTCTCACTTCGGAAGGTCTGGCCCTCCGGACATCACCGATACTTACTCTCTCCTCGTCCTCAACATCACCTTCCGGACGAGTGCGGATGATCTGTTTCCGCTTTTCGATAAGTACGGCAAGGTCGTCGACATCTTCATCCCCAGAGACCGAAGGACTGGCGAGTCCAGGGGATTTGCTTTTGTGCGATACAAATATGCAGATGAGGCACAGAAAGCAGTTGAGAGGCTCGATGGAAGAGTTGTTGATGGTCGCGAAATAACTGTTCAGTTTGCAAAATATGGGCCTAATGCAGAGAGGATTCATAAAGGAAGGATTACTGAAACTCTACCAAAATCGAGGCATAGGTCAAGAAGTCGCAGTCCTCGGAGAAGGTACCGTGATGACTATAGAGATCGGGACTACAGGAGGAGAAGTCGCAGTAGGAGTTGGGATAGGTATGAGCGTGACAGATACCGCCATAGACGAAGCAGGAGCCCTAGTGCCAGTCCTGATTACTACAGGAGCAGGGGAAGAGGACGCTATGATGATGATGATGATGATGATTATGATAGGCGGAGGCAGAGTCCGATTCGAAGCCGTTCTTTTGATAGTGCATCCCCTGCTCGGCGTAGCCTTACACCTCAAAGGAGCCTTTCTCCGTTAAGCAGAAGCCGCAGTGTCAGCCCTTATGGACATGGTCGTGATGGACGATCGCCTAATTCTCGAAGTGTTTCACCACGAGGTCATCCTGCTGATTCTCGAAGTCCATCACCTCGCCATTCAGATGATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

258

Amino Acids

30.31

Weight (kDa)

10.86

Isoelectric Point (pI)

98.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	18 - 88	2.1e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64200 AT5G64200
fragaria_vesca	FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_6g21680
malus_domestica	MD08G1182200.v1.1 MD14G1052000.v1.1 MD15G1367900.v1.1
prunus_persica	Prupe.1G516100_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1
pyrus_communis	pycom08g15600 pycom12g04670 pycom14g04330 pycom15g32980
rosa_chinensis	RchiOBHm_Chr3g0478961 RchiOBHm_Chr7g0239081
rosa_laevigata	RLG00000000784 RLG00000023616
rosa_multiflora	Rmu_sc0004605.1_g000002 Rmu_sc0005645.1_g000001 Rmu_sc0012163.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221270 Rroxscaffold_6G00402870
rosa_rugosa	Rorug03G0169300 Rorug03G0169400 Rorug03G0169400 Rorug03G0169400 Rorug03G0169500 Rorug03G0169600 Rorug07G0325500 Rorug07G0325600 Rorug07G0325700 Rorug07G0325800
rosa_samantha	Rh3AG220800 Rh3BG252800 Rh3CG249500 Rh3DG245500 Rh7AG480000 Rh7CG497500 Rh7DG465100
rosa_wichuraiana	Rw3G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	163
Acc65I	GGTACC	1 cut(s)	375
AccB1I	GGYRCC	1 cut(s)	375
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	1 cut(s)	255
AccIII	TCCGGA	2 cut(s)	28, 75
AciI	CCGC	5 cut(s)	86, 101, 457, 556, 655
AfaI	GTAC	2 cut(s)	116, 377
AfiI	CCNNNNNNNGG	1 cut(s)	606
AjnI	CCWGG	1 cut(s)	167
Alw26I	GTCTC	2 cut(s)	9, 141
Aor13HI	TCCGGA	2 cut(s)	28, 75
AoxI	GGCC	2 cut(s)	22, 284
Asp700I	GAANNNNTTC	2 cut(s)	580, 712
Asp718I	GGTACC	1 cut(s)	375
AspS9I	GGNCC	2 cut(s)	23, 284
AsuHPI	GGTGA	4 cut(s)	28, 61, 708, 744
AsuII	TTCGAA	1 cut(s)	574
BanI	GGYRCC	1 cut(s)	375
BanII	GRGCYC	1 cut(s)	479
BauI	CACGAG	1 cut(s)	720
BccI	CCATC	5 cut(s)	227, 242, 680, 757, 764
BceAI	ACGGC	2 cut(s)	133, 564
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BciT130I	CCWGG	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	9, 141
BfaI	CTAG	1 cut(s)	480
BfmI	CTRYAG	3 cut(s)	388, 403, 499
BisI	GCNGC	1 cut(s)	655
BlsI	GCNGC	1 cut(s)	656
Bme1390I	CCNGG	1 cut(s)	169
BmgT120I	GGNCC	2 cut(s)	23, 284
BmiI	GGNNCC	3 cut(s)	377, 476, 632
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	605
BplI	GAGNNNNNCTC	2 cut(s)	622, 654
Bpu14I	TTCGAA	1 cut(s)	574
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	168, 365
BsaWI	WCCGGW	2 cut(s)	28, 75
BsaXI	ACNNNNNCTCC	6 cut(s)	400, 430, 466, 496, 550, 580
Bsc4I	CCNNNNNNNGG	1 cut(s)	606
Bse1I	ACTGG	2 cut(s)	163, 486
BseAI	TCCGGA	2 cut(s)	28, 75
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	168, 365
BseGI	GGATG	4 cut(s)	94, 138, 596, 727
BseLI	CCNNNNNNNGG	1 cut(s)	606
BseNI	ACTGG	2 cut(s)	163, 486
BseRI	GAGGAG	2 cut(s)	44, 424
Bsh1236I	CGCG	1 cut(s)	255
Bsh1285I	CGRYCG	1 cut(s)	695
BshFI	GGCC	2 cut(s)	24, 286
BshNI	GGYRCC	1 cut(s)	375
BsiEI	CGRYCG	1 cut(s)	695
BsiSI	CCGG	2 cut(s)	29, 76
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	1 cut(s)	606
BsmAI	GTCTC	2 cut(s)	9, 141
BsmFI	GGGAC	1 cut(s)	413
BsnI	GGCC	2 cut(s)	24, 286
Bso31I	GGTCTC	1 cut(s)	141
Bsp119I	TTCGAA	1 cut(s)	574
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp13I	TCCGGA	2 cut(s)	28, 75
Bsp143I	GATC	3 cut(s)	91, 394, 692
Bsp68I	TCGCGA	1 cut(s)	255
BspACI	CCGC	5 cut(s)	86, 101, 457, 556, 655
BspANI	GGCC	2 cut(s)	24, 286
BspEI	TCCGGA	2 cut(s)	28, 75
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	3 cut(s)	377, 476, 632
BspT104I	TTCGAA	1 cut(s)	574
BspT107I	GGYRCC	1 cut(s)	375
BspTNI	GGTCTC	1 cut(s)	141
BsrI	ACTGG	2 cut(s)	163, 486
BssECI	CCNNGG	2 cut(s)	168, 365
BssMI	GATC	3 cut(s)	91, 394, 692
BssSI	CACGAG	1 cut(s)	720
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	2 cut(s)	265, 380
Bst6I	CTCTTC	2 cut(s)	232, 508
BstAPI	GCANNNNNTGC	1 cut(s)	602
BstBI	TTCGAA	1 cut(s)	574
BstF5I	GGATG	4 cut(s)	94, 138, 596, 727
BstFNI	CGCG	1 cut(s)	255
BstKTI	GATC	3 cut(s)	94, 397, 695
BstMAI	GTCTC	2 cut(s)	9, 141
BstMBI	GATC	3 cut(s)	91, 394, 692
BstMCI	CGRYCG	1 cut(s)	695
BstMWI	GCNNNNNNNGC	5 cut(s)	206, 215, 602, 654, 663
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	167
BstSFI	CTRYAG	3 cut(s)	388, 403, 499
BstUI	CGCG	1 cut(s)	255
BsuRI	GGCC	2 cut(s)	24, 286
BtsCI	GGATG	4 cut(s)	94, 138, 596, 727
BtsI	GCAGTG	1 cut(s)	664
BtsIMutI	CAGTG	1 cut(s)	664
BtuMI	TCGCGA	1 cut(s)	255
Cfr13I	GGNCC	2 cut(s)	23, 284
CseI	GACGC	1 cut(s)	528
Csp6I	GTAC	2 cut(s)	115, 376
CviAII	CATG	1 cut(s)	677
CviJI	RGCY	9 cut(s)	24, 229, 286, 477, 579, 615, 633, 654, 666
CviKI_1	RGCY	9 cut(s)	24, 229, 286, 477, 579, 615, 633, 654, 666
CviQI	GTAC	2 cut(s)	115, 376
DpnI	GATC	3 cut(s)	93, 396, 694
DpnII	GATC	3 cut(s)	91, 394, 692
DrdI	GACNNNNNNGTC	1 cut(s)	163
DseDI	GACNNNNNNGTC	1 cut(s)	163
Eam1104I	CTCTTC	2 cut(s)	232, 508
EarI	CTCTTC	2 cut(s)	232, 508
EciI	GGCGGA	1 cut(s)	571
Eco24I	GRGCYC	1 cut(s)	479
Eco31I	GGTCTC	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	167
EcoT38I	GRGCYC	1 cut(s)	479
FaeI	CATG	1 cut(s)	680
FalI	AAGNNNNNCTT	2 cut(s)	568, 600
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	1 cut(s)	676
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	655
FokI	GGATG	4 cut(s)	101, 125, 583, 714
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	1 cut(s)	655
FspBI	CTAG	1 cut(s)	480
GluI	GCNGC	1 cut(s)	655
HaeIII	GGCC	2 cut(s)	24, 286
HapII	CCGG	2 cut(s)	29, 76
HgaI	GACGC	1 cut(s)	528
Hin1II	CATG	1 cut(s)	680
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	5 cut(s)	164, 301, 565, 571, 737
HpaII	CCGG	2 cut(s)	29, 76
HphI	GGTGA	4 cut(s)	28, 61, 708, 744
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	4 cut(s)	14, 369, 570, 766
Hpy188III	TCNNGA	9 cut(s)	29, 76, 254, 351, 398, 491, 683, 705, 741
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	5 cut(s)	9, 82, 147, 306, 366
HpyCH4III	ACNGT	2 cut(s)	265, 380
HpyCH4V	TGCA	4 cut(s)	200, 275, 293, 596
HpyF10VI	GCNNNNNNNGC	5 cut(s)	206, 215, 602, 654, 663
Hsp92II	CATG	1 cut(s)	680
Kpn2I	TCCGGA	2 cut(s)	28, 75
KpnI	GGTACC	1 cut(s)	379
Kzo9I	GATC	3 cut(s)	91, 394, 692
LmnI	GCTCC	3 cut(s)	474, 504, 630
LweI	GCATC	1 cut(s)	605
MaeI	CTAG	1 cut(s)	480
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	3 cut(s)	93, 396, 694
MboI	GATC	3 cut(s)	91, 394, 692
MboII	GAAGA	3 cut(s)	127, 249, 525
MhlI	GDGCHC	1 cut(s)	479
MluCI	AATT	1 cut(s)	700
MlyI	GAGTC	2 cut(s)	173, 574
MroI	TCCGGA	2 cut(s)	28, 75
MroXI	GAANNNNTTC	2 cut(s)	580, 712
MseI	TTAA	1 cut(s)	644
MslI	CAYNNNNRTG	2 cut(s)	681, 765
MspI	CCGG	2 cut(s)	29, 76
MspR9I	CCNGG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	169
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	5 cut(s)	206, 215, 602, 654, 663
NdeII	GATC	3 cut(s)	91, 394, 692
NlaIII	CATG	1 cut(s)	680
NlaIV	GGNNCC	3 cut(s)	377, 476, 632
NmeAIII	GCCGAG	1 cut(s)	586
NmuCI	GTSAC	1 cut(s)	446
NruI	TCGCGA	1 cut(s)	255
NspV	TTCGAA	1 cut(s)	574
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 688
PdmI	GAANNNNTTC	2 cut(s)	580, 712
PfeI	GAWTC	3 cut(s)	301, 571, 737
PflFI	GACNNNGTC	1 cut(s)	678
PkrI	GCNGC	1 cut(s)	656
Ple19I	CGATCG	1 cut(s)	695
PleI	GAGTC	2 cut(s)	172, 573
PpsI	GAGTC	2 cut(s)	172, 573
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	3 cut(s)	377, 476, 632
PspPI	GGNCC	2 cut(s)	23, 284
PsyI	GACNNNGTC	1 cut(s)	678
PvuI	CGATCG	1 cut(s)	695
RruI	TCGCGA	1 cut(s)	255
RsaI	GTAC	2 cut(s)	116, 377
RsaNI	GTAC	2 cut(s)	115, 376
RseI	CAYNNNNRTG	2 cut(s)	681, 765
SalI	GTCGAC	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	644
SatI	GCNGC	1 cut(s)	655
Sau3AI	GATC	3 cut(s)	91, 394, 692
Sau96I	GGNCC	2 cut(s)	23, 284
SchI	GAGTC	2 cut(s)	173, 574
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	479
SetI	ASST	9 cut(s)	20, 74, 126, 350, 377, 440, 625, 727, 757
SfaNI	GCATC	1 cut(s)	605
SfcI	CTRYAG	3 cut(s)	388, 403, 499
SfuI	TTCGAA	1 cut(s)	574
SmiMI	CAYNNNNRTG	2 cut(s)	681, 765
Sse9I	AATT	1 cut(s)	700
SsiI	CCGC	5 cut(s)	86, 101, 457, 556, 655
SspMI	CTAG	1 cut(s)	480
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	2 cut(s)	265, 380
TaqI	TCGA	7 cut(s)	108, 129, 231, 338, 574, 706, 742
TaqII	GACCGA	1 cut(s)	165
TasI	AATT	1 cut(s)	700
TauI	GCSGC	1 cut(s)	657
TfiI	GAWTC	3 cut(s)	301, 571, 737
Tru1I	TTAA	1 cut(s)	644
Tru9I	TTAA	1 cut(s)	644
TscAI	CASTG	1 cut(s)	664
TseFI	GTSAC	1 cut(s)	446
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	2 cut(s)	127, 293
TspGWI	ACGGA	1 cut(s)	630
TspRI	CASTG	1 cut(s)	664
Tth111I	GACNNNGTC	1 cut(s)	678
XcmI	CCANNNNNNNNNTGG	1 cut(s)	767
XmiI	GTMKAC	1 cut(s)	129
XmnI	GAANNNNTTC	2 cut(s)	580, 712
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.